Ggra4313.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4313.t1
Unique NameGgra4313.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:532780..533331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4313Ggra4313Gracilaria gracilis GNS1m malegenetig00000022_pilon 532780..533331 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4313.t1.start1Ggra4313.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 532780..532782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4313.t1.CDS1Ggra4313.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 532780..533331 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4313.t1.exon1Ggra4313.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 532780..533331 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4313.t1.stop1Ggra4313.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 533329..533331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4313.t1Ggra4313.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 532780..533331 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4313.t1 ID=Ggra4313.t1|Name=Ggra4313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MKRAYIVLSALLLCNALAAEICSMEFCRSNFLQQCRTQIFCVTTPCPQPP
PQSCIRFVLEQLAMPPTDTPTTVTLPPGVLPTSFAPPTIPPPTTTPPTTT
PASTSTAECDDPANIAQGDFITIGSTDCCAVAGLGCRQLGESCSTTAVLL
SQPVGCEAGLTCVITDPGNLALDVPNSGTCQSA*
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spliced messenger RNA

>Ggra4313.t1 ID=Ggra4313.t1|Name=Ggra4313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000022_pilon:532780..533331+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCGCGTACATTGTGCTAAGCGCACTGCTACTTTGCAACGCGCT
CGCCGCCGAGATCTGCTCCATGGAATTCTGCCGGTCCAACTTCTTGCAAC
AATGCCGCACGCAGATTTTCTGCGTTACGACGCCGTGTCCACAGCCGCCG
CCGCAGTCATGTATACGCTTCGTACTCGAACAACTTGCCATGCCGCCAAC
CGATACCCCGACTACGGTTACGCTACCGCCTGGCGTGCTGCCAACTAGCT
TCGCACCGCCTACCATCCCTCCGCCTACCACCACACCGCCGACTACCACA
CCAGCTTCCACGTCCACCGCGGAGTGCGACGACCCTGCAAACATTGCTCA
AGGCGATTTCATTACCATTGGCTCAACGGACTGTTGTGCTGTTGCCGGTC
TTGGTTGCAGGCAGCTCGGCGAGAGTTGCTCCACTACGGCAGTGCTGCTG
TCGCAACCGGTGGGCTGTGAAGCTGGTCTAACTTGCGTCATTACAGATCC
GGGCAATCTTGCACTCGATGTGCCCAACAGTGGCACATGCCAATCAGCTT
AG
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protein sequence of Ggra4313.t1

>Ggra4313.t1 ID=Ggra4313.t1|Name=Ggra4313.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MKRAYIVLSALLLCNALAAEICSMEFCRSNFLQQCRTQIFCVTTPCPQPP
PQSCIRFVLEQLAMPPTDTPTTVTLPPGVLPTSFAPPTIPPPTTTPPTTT
PASTSTAECDDPANIAQGDFITIGSTDCCAVAGLGCRQLGESCSTTAVLL
SQPVGCEAGLTCVITDPGNLALDVPNSGTCQSA*
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mRNA from alignment at tig00000022_pilon:532780..533331+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4313.t1 ID=Ggra4313.t1|Name=Ggra4313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000022_pilon:532780..533331+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCGCGTACATTGTGCTAAGCGCACTGCTACTTTGCAACGCGCT
CGCCGCCGAGATCTGCTCCATGGAATTCTGCCGGTCCAACTTCTTGCAAC
AATGCCGCACGCAGATTTTCTGCGTTACGACGCCGTGTCCACAGCCGCCG
CCGCAGTCATGTATACGCTTCGTACTCGAACAACTTGCCATGCCGCCAAC
CGATACCCCGACTACGGTTACGCTACCGCCTGGCGTGCTGCCAACTAGCT
TCGCACCGCCTACCATCCCTCCGCCTACCACCACACCGCCGACTACCACA
CCAGCTTCCACGTCCACCGCGGAGTGCGACGACCCTGCAAACATTGCTCA
AGGCGATTTCATTACCATTGGCTCAACGGACTGTTGTGCTGTTGCCGGTC
TTGGTTGCAGGCAGCTCGGCGAGAGTTGCTCCACTACGGCAGTGCTGCTG
TCGCAACCGGTGGGCTGTGAAGCTGGTCTAACTTGCGTCATTACAGATCC
GGGCAATCTTGCACTCGATGTGCCCAACAGTGGCACATGCCAATCAGCTT
AG
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Coding sequence (CDS) from alignment at tig00000022_pilon:532780..533331+

>Ggra4313.t1 ID=Ggra4313.t1|Name=Ggra4313.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000022_pilon:532780..533331+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCGCGTACATTGTGCTAAGCGCACTGCTACTTTGCAACGCGCT
CGCCGCCGAGATCTGCTCCATGGAATTCTGCCGGTCCAACTTCTTGCAAC
AATGCCGCACGCAGATTTTCTGCGTTACGACGCCGTGTCCACAGCCGCCG
CCGCAGTCATGTATACGCTTCGTACTCGAACAACTTGCCATGCCGCCAAC
CGATACCCCGACTACGGTTACGCTACCGCCTGGCGTGCTGCCAACTAGCT
TCGCACCGCCTACCATCCCTCCGCCTACCACCACACCGCCGACTACCACA
CCAGCTTCCACGTCCACCGCGGAGTGCGACGACCCTGCAAACATTGCTCA
AGGCGATTTCATTACCATTGGCTCAACGGACTGTTGTGCTGTTGCCGGTC
TTGGTTGCAGGCAGCTCGGCGAGAGTTGCTCCACTACGGCAGTGCTGCTG
TCGCAACCGGTGGGCTGTGAAGCTGGTCTAACTTGCGTCATTACAGATCC
GGGCAATCTTGCACTCGATGTGCCCAACAGTGGCACATGCCAATCAGCTT
AG
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