Ggra4312.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4312.t1
Unique NameGgra4312.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:528000..529211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1944.JOAZ01000026_gene2660
PFAMsInhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue7.47e-41
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,2GJYH@201174|Actinobacteria,418W6@629295|Streptomyces griseus group
DescriptionPeptidase inhibitor I9
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4312Ggra4312Gracilaria gracilis GNS1m malegenetig00000022_pilon 528000..529211 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4312.t1.stop1Ggra4312.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 528000..528002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4312.t1.CDS1Ggra4312.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 528000..529211 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4312.t1.exon1Ggra4312.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 528000..529211 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4312.t1.start1Ggra4312.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 529209..529211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4312.t1Ggra4312.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 528000..529211 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4312.t1 ID=Ggra4312.t1|Name=Ggra4312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MLAKAFFVILLFHFSFFTSAALAKPVRRRARKIPGSFIVQLDGDCKARCR
ARLRRALASNPATAGCTLGKRGSRIGKLVFEDVKCPPSSSIQESSVTSII
AAQANMDSVPGVQLIAQDEEVYIAAAEPTAYWGVDETDGGVKKEKRTPVR
DGLRTCSTTSQNGTGVNVWILDTGCTPSATGFCEGYYGGDNVCQDNNGHG
DHVGGTATHPVYGVATGAVRSCVKVLSDSGSGSYSNVIKGIEFAVINKDK
FGKGDVINLSLGGPKYDPVNNAVIAARESGMFFAIAAGNSADNACNYSPA
STKGRGIFTVQAHDKDLKPASFTNYATKELKCTDLSAPGVGIESIGGTFS
GTSMASPHVAGACAVLMSNGLKPNKKRLIAEGVRIKIDGALGRRSLGLAC
PEA*
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spliced messenger RNA

>Ggra4312.t1 ID=Ggra4312.t1|Name=Ggra4312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000022_pilon:528000..529211- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCCAAGGCCTTCTTCGTTATTCTACTATTCCACTTCTCGTTTTT
CACATCTGCAGCGCTTGCAAAGCCAGTCAGAAGGAGGGCTCGCAAAATTC
CAGGCTCTTTCATCGTTCAGCTTGATGGCGACTGCAAAGCCCGATGCCGA
GCCAGGTTGCGTAGGGCGTTGGCGTCCAACCCAGCAACAGCAGGCTGCAC
TCTAGGTAAAAGGGGGAGCAGGATTGGAAAATTGGTTTTTGAGGACGTGA
AATGCCCCCCTTCAAGCTCCATTCAGGAATCCTCCGTCACTTCCATCATT
GCTGCCCAGGCGAACATGGACTCTGTTCCTGGCGTTCAGCTCATAGCTCA
GGATGAAGAAGTCTACATCGCCGCTGCTGAGCCAACTGCCTACTGGGGCG
TTGACGAAACAGACGGTGGCGTGAAAAAAGAGAAAAGGACCCCAGTTAGG
GATGGACTTCGTACCTGCAGCACCACTAGTCAGAACGGCACTGGTGTTAA
CGTGTGGATCTTGGACACTGGCTGCACACCGTCCGCCACAGGGTTTTGCG
AGGGCTATTATGGAGGGGACAATGTTTGCCAGGATAATAATGGTCATGGG
GATCACGTTGGAGGTACTGCCACACATCCGGTATACGGAGTTGCTACAGG
TGCTGTGCGCAGCTGCGTCAAGGTTCTGAGCGATAGTGGCTCAGGAAGCT
ACTCCAACGTCATCAAAGGTATTGAGTTCGCGGTGATCAACAAGGACAAG
TTTGGAAAGGGTGACGTGATCAACCTTTCTCTCGGAGGTCCAAAGTATGA
TCCCGTCAACAACGCCGTGATTGCCGCCAGAGAAAGTGGCATGTTCTTCG
CTATAGCGGCTGGAAACAGTGCTGACAACGCCTGCAACTATTCACCAGCC
TCTACGAAGGGACGTGGAATATTTACGGTTCAGGCACATGATAAGGACCT
GAAGCCTGCATCGTTTACTAATTACGCCACCAAAGAGTTGAAATGTACGG
ATCTGTCGGCCCCAGGCGTTGGAATTGAATCGATTGGAGGCACGTTCTCT
GGAACCTCTATGGCATCCCCTCATGTCGCGGGAGCTTGTGCCGTACTGAT
GTCAAATGGTTTGAAGCCTAACAAGAAGCGCCTCATCGCCGAGGGTGTTC
GCATTAAGATCGATGGGGCTCTCGGCCGCCGCTCTCTTGGTTTGGCTTGT
CCCGAAGCCTGA
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protein sequence of Ggra4312.t1

>Ggra4312.t1 ID=Ggra4312.t1|Name=Ggra4312.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MLAKAFFVILLFHFSFFTSAALAKPVRRRARKIPGSFIVQLDGDCKARCR
ARLRRALASNPATAGCTLGKRGSRIGKLVFEDVKCPPSSSIQESSVTSII
AAQANMDSVPGVQLIAQDEEVYIAAAEPTAYWGVDETDGGVKKEKRTPVR
DGLRTCSTTSQNGTGVNVWILDTGCTPSATGFCEGYYGGDNVCQDNNGHG
DHVGGTATHPVYGVATGAVRSCVKVLSDSGSGSYSNVIKGIEFAVINKDK
FGKGDVINLSLGGPKYDPVNNAVIAARESGMFFAIAAGNSADNACNYSPA
STKGRGIFTVQAHDKDLKPASFTNYATKELKCTDLSAPGVGIESIGGTFS
GTSMASPHVAGACAVLMSNGLKPNKKRLIAEGVRIKIDGALGRRSLGLAC
PEA*
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mRNA from alignment at tig00000022_pilon:528000..529211-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4312.t1 ID=Ggra4312.t1|Name=Ggra4312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000022_pilon:528000..529211- (Gracilaria gracilis GNS1m male)
ATGTTGGCCAAGGCCTTCTTCGTTATTCTACTATTCCACTTCTCGTTTTT
CACATCTGCAGCGCTTGCAAAGCCAGTCAGAAGGAGGGCTCGCAAAATTC
CAGGCTCTTTCATCGTTCAGCTTGATGGCGACTGCAAAGCCCGATGCCGA
GCCAGGTTGCGTAGGGCGTTGGCGTCCAACCCAGCAACAGCAGGCTGCAC
TCTAGGTAAAAGGGGGAGCAGGATTGGAAAATTGGTTTTTGAGGACGTGA
AATGCCCCCCTTCAAGCTCCATTCAGGAATCCTCCGTCACTTCCATCATT
GCTGCCCAGGCGAACATGGACTCTGTTCCTGGCGTTCAGCTCATAGCTCA
GGATGAAGAAGTCTACATCGCCGCTGCTGAGCCAACTGCCTACTGGGGCG
TTGACGAAACAGACGGTGGCGTGAAAAAAGAGAAAAGGACCCCAGTTAGG
GATGGACTTCGTACCTGCAGCACCACTAGTCAGAACGGCACTGGTGTTAA
CGTGTGGATCTTGGACACTGGCTGCACACCGTCCGCCACAGGGTTTTGCG
AGGGCTATTATGGAGGGGACAATGTTTGCCAGGATAATAATGGTCATGGG
GATCACGTTGGAGGTACTGCCACACATCCGGTATACGGAGTTGCTACAGG
TGCTGTGCGCAGCTGCGTCAAGGTTCTGAGCGATAGTGGCTCAGGAAGCT
ACTCCAACGTCATCAAAGGTATTGAGTTCGCGGTGATCAACAAGGACAAG
TTTGGAAAGGGTGACGTGATCAACCTTTCTCTCGGAGGTCCAAAGTATGA
TCCCGTCAACAACGCCGTGATTGCCGCCAGAGAAAGTGGCATGTTCTTCG
CTATAGCGGCTGGAAACAGTGCTGACAACGCCTGCAACTATTCACCAGCC
TCTACGAAGGGACGTGGAATATTTACGGTTCAGGCACATGATAAGGACCT
GAAGCCTGCATCGTTTACTAATTACGCCACCAAAGAGTTGAAATGTACGG
ATCTGTCGGCCCCAGGCGTTGGAATTGAATCGATTGGAGGCACGTTCTCT
GGAACCTCTATGGCATCCCCTCATGTCGCGGGAGCTTGTGCCGTACTGAT
GTCAAATGGTTTGAAGCCTAACAAGAAGCGCCTCATCGCCGAGGGTGTTC
GCATTAAGATCGATGGGGCTCTCGGCCGCCGCTCTCTTGGTTTGGCTTGT
CCCGAAGCCTGA
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Coding sequence (CDS) from alignment at tig00000022_pilon:528000..529211-

>Ggra4312.t1 ID=Ggra4312.t1|Name=Ggra4312.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000022_pilon:528000..529211- (Gracilaria gracilis GNS1m male)
ATGTTGGCCAAGGCCTTCTTCGTTATTCTACTATTCCACTTCTCGTTTTT
CACATCTGCAGCGCTTGCAAAGCCAGTCAGAAGGAGGGCTCGCAAAATTC
CAGGCTCTTTCATCGTTCAGCTTGATGGCGACTGCAAAGCCCGATGCCGA
GCCAGGTTGCGTAGGGCGTTGGCGTCCAACCCAGCAACAGCAGGCTGCAC
TCTAGGTAAAAGGGGGAGCAGGATTGGAAAATTGGTTTTTGAGGACGTGA
AATGCCCCCCTTCAAGCTCCATTCAGGAATCCTCCGTCACTTCCATCATT
GCTGCCCAGGCGAACATGGACTCTGTTCCTGGCGTTCAGCTCATAGCTCA
GGATGAAGAAGTCTACATCGCCGCTGCTGAGCCAACTGCCTACTGGGGCG
TTGACGAAACAGACGGTGGCGTGAAAAAAGAGAAAAGGACCCCAGTTAGG
GATGGACTTCGTACCTGCAGCACCACTAGTCAGAACGGCACTGGTGTTAA
CGTGTGGATCTTGGACACTGGCTGCACACCGTCCGCCACAGGGTTTTGCG
AGGGCTATTATGGAGGGGACAATGTTTGCCAGGATAATAATGGTCATGGG
GATCACGTTGGAGGTACTGCCACACATCCGGTATACGGAGTTGCTACAGG
TGCTGTGCGCAGCTGCGTCAAGGTTCTGAGCGATAGTGGCTCAGGAAGCT
ACTCCAACGTCATCAAAGGTATTGAGTTCGCGGTGATCAACAAGGACAAG
TTTGGAAAGGGTGACGTGATCAACCTTTCTCTCGGAGGTCCAAAGTATGA
TCCCGTCAACAACGCCGTGATTGCCGCCAGAGAAAGTGGCATGTTCTTCG
CTATAGCGGCTGGAAACAGTGCTGACAACGCCTGCAACTATTCACCAGCC
TCTACGAAGGGACGTGGAATATTTACGGTTCAGGCACATGATAAGGACCT
GAAGCCTGCATCGTTTACTAATTACGCCACCAAAGAGTTGAAATGTACGG
ATCTGTCGGCCCCAGGCGTTGGAATTGAATCGATTGGAGGCACGTTCTCT
GGAACCTCTATGGCATCCCCTCATGTCGCGGGAGCTTGTGCCGTACTGAT
GTCAAATGGTTTGAAGCCTAACAAGAAGCGCCTCATCGCCGAGGGTGTTC
GCATTAAGATCGATGGGGCTCTCGGCCGCCGCTCTCTTGGTTTGGCTTGT
CCCGAAGCCTGA
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