Ggra4310.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4310.t1
Unique NameGgra4310.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length604
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:521674..523485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4310Ggra4310Gracilaria gracilis GNS1m malegenetig00000022_pilon 521674..523485 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4310.t1.stop1Ggra4310.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 521674..521676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4310.t1.CDS1Ggra4310.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 521674..523485 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4310.t1.exon1Ggra4310.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 521674..523485 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4310.t1.start1Ggra4310.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 523483..523485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4310.t1Ggra4310.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 521674..523485 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4310.t1 ID=Ggra4310.t1|Name=Ggra4310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp
MNPERKFSLADLPFDLKAQVFSQTGPDSFKVEGRNLTDLLCTKQVANLDN
TFYNGLAYGLRDITEIDAMNPFDNVHWNKASQPILDIERKVFNSFLSSEG
DESLHLRQRFASMLIFVIKSSGRNLRVIRLPLVYGFQSAILESLIKHCPN
LSEIQVTDLHLSDCTYRLAELVRNSKSIRKFACEYPTEAVFEALCCTESQ
IESLEFSNVHCSLVSDLVLAAETHRNVLRSLAINRIGWYGPRQAWDEIES
SCFHGQGYVHKFVRSQLPKLKELKLSTLGFHGDLELSFTDPSRLETPADM
VTQLDLLEVRAQGDFCMRYPGASISEIDLKEFMMAENGLHRLVYDASVFD
TEVSSECSDDEDYQTFNADNFRFELMYLSRRDSTICLPTNYKCLQSMNVD
LNAIVPYFFSCRLFRKDLRQVLFHAAQSLKYVAFDDDWREYMNSNYKQLC
RFMRCILFYSENVSHIRMPSFLVEELSNNEFSSLHWEQLVAVMSQVQELR
HLQITTPFQNVWCSQAEMLHRVRNFLDSWPLLLTCAACSFPELKTICLLF
KTENEEALPRELESSLVAAMKATAEFEQCHPAVDVREVQARLEMWLIAMR
RSG*
back to top

spliced messenger RNA

>Ggra4310.t1 ID=Ggra4310.t1|Name=Ggra4310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000022_pilon:521674..523485- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCAGAACGGAAATTCTCTCTTGCGGACCTTCCTTTTGATTTGAA
GGCTCAAGTGTTCTCACAAACGGGACCAGATAGTTTCAAAGTGGAGGGAA
GGAATCTAACAGACCTTCTTTGTACAAAACAAGTTGCAAACTTGGACAAC
ACGTTTTATAACGGACTTGCTTACGGACTGCGGGATATAACTGAGATCGA
TGCGATGAATCCCTTCGACAATGTCCATTGGAATAAAGCCAGTCAGCCTA
TTCTTGATATTGAAAGGAAGGTATTTAATTCCTTTTTGAGTTCAGAAGGT
GACGAAAGTCTTCATCTTCGACAGAGATTTGCATCCATGCTCATTTTTGT
GATTAAATCTTCTGGAAGGAACCTCAGAGTGATCCGGCTCCCCCTTGTGT
ATGGATTTCAGTCTGCGATATTGGAGTCTCTTATCAAGCACTGTCCCAAT
CTTTCTGAAATTCAAGTGACGGATCTTCATCTAAGCGATTGTACATACCG
ACTGGCCGAACTAGTGCGGAATTCTAAAAGTATTCGTAAGTTTGCATGCG
AGTATCCAACTGAGGCTGTATTCGAGGCTCTCTGCTGTACAGAAAGCCAA
ATTGAGAGCCTTGAGTTCTCTAATGTACACTGCAGTCTTGTAAGTGACCT
CGTTTTGGCAGCAGAAACTCATAGAAACGTACTTCGGTCATTGGCTATCA
ACCGCATTGGCTGGTATGGACCAAGACAAGCATGGGACGAGATTGAAAGC
AGTTGTTTTCACGGGCAAGGATATGTCCACAAGTTCGTGAGATCCCAGCT
GCCAAAGTTGAAGGAGCTCAAGCTTTCAACTCTTGGGTTTCATGGAGACC
TCGAACTTTCGTTTACAGATCCATCAAGACTAGAAACACCAGCTGATATG
GTTACACAGCTTGATCTACTCGAGGTGAGAGCACAGGGAGATTTCTGTAT
GAGATACCCGGGTGCAAGTATTTCGGAAATAGACTTGAAAGAGTTCATGA
TGGCGGAAAACGGGCTTCACAGACTCGTCTACGATGCTAGTGTATTTGAT
ACCGAAGTAAGCTCTGAATGTTCGGATGACGAAGACTACCAAACGTTTAA
TGCAGATAATTTCAGGTTTGAATTGATGTATTTGAGCCGAAGAGATAGCA
CTATTTGTCTACCAACAAATTACAAATGCCTGCAGTCGATGAACGTGGAT
CTGAATGCAATAGTGCCATACTTTTTCAGTTGCAGGTTGTTCCGTAAGGA
CCTCAGGCAGGTGTTATTTCACGCGGCACAGTCACTCAAGTACGTGGCTT
TTGATGATGACTGGCGTGAGTACATGAACTCGAATTACAAACAGTTGTGT
CGGTTTATGCGCTGTATACTTTTCTACAGCGAGAATGTGTCGCACATACG
CATGCCATCGTTCCTTGTAGAAGAACTGAGCAACAACGAGTTCTCTTCTC
TGCACTGGGAGCAGCTTGTGGCTGTGATGTCGCAGGTTCAAGAGTTGAGA
CATCTCCAGATAACGACTCCGTTTCAGAACGTTTGGTGTTCACAAGCTGA
AATGCTGCATCGAGTGAGGAACTTTTTGGACAGTTGGCCGCTGTTGTTGA
CATGTGCAGCGTGTAGTTTTCCGGAGCTGAAGACGATCTGTCTGCTGTTT
AAGACTGAGAACGAAGAGGCGCTGCCGCGAGAATTGGAAAGTTCGTTGGT
TGCAGCTATGAAGGCCACCGCTGAATTTGAGCAATGCCATCCTGCAGTGG
ATGTGCGAGAAGTACAGGCGCGTTTGGAAATGTGGTTGATTGCAATGAGG
CGAAGCGGGTAG
back to top

protein sequence of Ggra4310.t1

>Ggra4310.t1 ID=Ggra4310.t1|Name=Ggra4310.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=604bp
MNPERKFSLADLPFDLKAQVFSQTGPDSFKVEGRNLTDLLCTKQVANLDN
TFYNGLAYGLRDITEIDAMNPFDNVHWNKASQPILDIERKVFNSFLSSEG
DESLHLRQRFASMLIFVIKSSGRNLRVIRLPLVYGFQSAILESLIKHCPN
LSEIQVTDLHLSDCTYRLAELVRNSKSIRKFACEYPTEAVFEALCCTESQ
IESLEFSNVHCSLVSDLVLAAETHRNVLRSLAINRIGWYGPRQAWDEIES
SCFHGQGYVHKFVRSQLPKLKELKLSTLGFHGDLELSFTDPSRLETPADM
VTQLDLLEVRAQGDFCMRYPGASISEIDLKEFMMAENGLHRLVYDASVFD
TEVSSECSDDEDYQTFNADNFRFELMYLSRRDSTICLPTNYKCLQSMNVD
LNAIVPYFFSCRLFRKDLRQVLFHAAQSLKYVAFDDDWREYMNSNYKQLC
RFMRCILFYSENVSHIRMPSFLVEELSNNEFSSLHWEQLVAVMSQVQELR
HLQITTPFQNVWCSQAEMLHRVRNFLDSWPLLLTCAACSFPELKTICLLF
KTENEEALPRELESSLVAAMKATAEFEQCHPAVDVREVQARLEMWLIAMR
RSG*
back to top

mRNA from alignment at tig00000022_pilon:521674..523485-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4310.t1 ID=Ggra4310.t1|Name=Ggra4310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000022_pilon:521674..523485- (Gracilaria gracilis GNS1m male)
ATGAACCCAGAACGGAAATTCTCTCTTGCGGACCTTCCTTTTGATTTGAA
GGCTCAAGTGTTCTCACAAACGGGACCAGATAGTTTCAAAGTGGAGGGAA
GGAATCTAACAGACCTTCTTTGTACAAAACAAGTTGCAAACTTGGACAAC
ACGTTTTATAACGGACTTGCTTACGGACTGCGGGATATAACTGAGATCGA
TGCGATGAATCCCTTCGACAATGTCCATTGGAATAAAGCCAGTCAGCCTA
TTCTTGATATTGAAAGGAAGGTATTTAATTCCTTTTTGAGTTCAGAAGGT
GACGAAAGTCTTCATCTTCGACAGAGATTTGCATCCATGCTCATTTTTGT
GATTAAATCTTCTGGAAGGAACCTCAGAGTGATCCGGCTCCCCCTTGTGT
ATGGATTTCAGTCTGCGATATTGGAGTCTCTTATCAAGCACTGTCCCAAT
CTTTCTGAAATTCAAGTGACGGATCTTCATCTAAGCGATTGTACATACCG
ACTGGCCGAACTAGTGCGGAATTCTAAAAGTATTCGTAAGTTTGCATGCG
AGTATCCAACTGAGGCTGTATTCGAGGCTCTCTGCTGTACAGAAAGCCAA
ATTGAGAGCCTTGAGTTCTCTAATGTACACTGCAGTCTTGTAAGTGACCT
CGTTTTGGCAGCAGAAACTCATAGAAACGTACTTCGGTCATTGGCTATCA
ACCGCATTGGCTGGTATGGACCAAGACAAGCATGGGACGAGATTGAAAGC
AGTTGTTTTCACGGGCAAGGATATGTCCACAAGTTCGTGAGATCCCAGCT
GCCAAAGTTGAAGGAGCTCAAGCTTTCAACTCTTGGGTTTCATGGAGACC
TCGAACTTTCGTTTACAGATCCATCAAGACTAGAAACACCAGCTGATATG
GTTACACAGCTTGATCTACTCGAGGTGAGAGCACAGGGAGATTTCTGTAT
GAGATACCCGGGTGCAAGTATTTCGGAAATAGACTTGAAAGAGTTCATGA
TGGCGGAAAACGGGCTTCACAGACTCGTCTACGATGCTAGTGTATTTGAT
ACCGAAGTAAGCTCTGAATGTTCGGATGACGAAGACTACCAAACGTTTAA
TGCAGATAATTTCAGGTTTGAATTGATGTATTTGAGCCGAAGAGATAGCA
CTATTTGTCTACCAACAAATTACAAATGCCTGCAGTCGATGAACGTGGAT
CTGAATGCAATAGTGCCATACTTTTTCAGTTGCAGGTTGTTCCGTAAGGA
CCTCAGGCAGGTGTTATTTCACGCGGCACAGTCACTCAAGTACGTGGCTT
TTGATGATGACTGGCGTGAGTACATGAACTCGAATTACAAACAGTTGTGT
CGGTTTATGCGCTGTATACTTTTCTACAGCGAGAATGTGTCGCACATACG
CATGCCATCGTTCCTTGTAGAAGAACTGAGCAACAACGAGTTCTCTTCTC
TGCACTGGGAGCAGCTTGTGGCTGTGATGTCGCAGGTTCAAGAGTTGAGA
CATCTCCAGATAACGACTCCGTTTCAGAACGTTTGGTGTTCACAAGCTGA
AATGCTGCATCGAGTGAGGAACTTTTTGGACAGTTGGCCGCTGTTGTTGA
CATGTGCAGCGTGTAGTTTTCCGGAGCTGAAGACGATCTGTCTGCTGTTT
AAGACTGAGAACGAAGAGGCGCTGCCGCGAGAATTGGAAAGTTCGTTGGT
TGCAGCTATGAAGGCCACCGCTGAATTTGAGCAATGCCATCCTGCAGTGG
ATGTGCGAGAAGTACAGGCGCGTTTGGAAATGTGGTTGATTGCAATGAGG
CGAAGCGGGTAG
back to top

Coding sequence (CDS) from alignment at tig00000022_pilon:521674..523485-

>Ggra4310.t1 ID=Ggra4310.t1|Name=Ggra4310.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00000022_pilon:521674..523485- (Gracilaria gracilis GNS1m male)
ATGAACCCAGAACGGAAATTCTCTCTTGCGGACCTTCCTTTTGATTTGAA
GGCTCAAGTGTTCTCACAAACGGGACCAGATAGTTTCAAAGTGGAGGGAA
GGAATCTAACAGACCTTCTTTGTACAAAACAAGTTGCAAACTTGGACAAC
ACGTTTTATAACGGACTTGCTTACGGACTGCGGGATATAACTGAGATCGA
TGCGATGAATCCCTTCGACAATGTCCATTGGAATAAAGCCAGTCAGCCTA
TTCTTGATATTGAAAGGAAGGTATTTAATTCCTTTTTGAGTTCAGAAGGT
GACGAAAGTCTTCATCTTCGACAGAGATTTGCATCCATGCTCATTTTTGT
GATTAAATCTTCTGGAAGGAACCTCAGAGTGATCCGGCTCCCCCTTGTGT
ATGGATTTCAGTCTGCGATATTGGAGTCTCTTATCAAGCACTGTCCCAAT
CTTTCTGAAATTCAAGTGACGGATCTTCATCTAAGCGATTGTACATACCG
ACTGGCCGAACTAGTGCGGAATTCTAAAAGTATTCGTAAGTTTGCATGCG
AGTATCCAACTGAGGCTGTATTCGAGGCTCTCTGCTGTACAGAAAGCCAA
ATTGAGAGCCTTGAGTTCTCTAATGTACACTGCAGTCTTGTAAGTGACCT
CGTTTTGGCAGCAGAAACTCATAGAAACGTACTTCGGTCATTGGCTATCA
ACCGCATTGGCTGGTATGGACCAAGACAAGCATGGGACGAGATTGAAAGC
AGTTGTTTTCACGGGCAAGGATATGTCCACAAGTTCGTGAGATCCCAGCT
GCCAAAGTTGAAGGAGCTCAAGCTTTCAACTCTTGGGTTTCATGGAGACC
TCGAACTTTCGTTTACAGATCCATCAAGACTAGAAACACCAGCTGATATG
GTTACACAGCTTGATCTACTCGAGGTGAGAGCACAGGGAGATTTCTGTAT
GAGATACCCGGGTGCAAGTATTTCGGAAATAGACTTGAAAGAGTTCATGA
TGGCGGAAAACGGGCTTCACAGACTCGTCTACGATGCTAGTGTATTTGAT
ACCGAAGTAAGCTCTGAATGTTCGGATGACGAAGACTACCAAACGTTTAA
TGCAGATAATTTCAGGTTTGAATTGATGTATTTGAGCCGAAGAGATAGCA
CTATTTGTCTACCAACAAATTACAAATGCCTGCAGTCGATGAACGTGGAT
CTGAATGCAATAGTGCCATACTTTTTCAGTTGCAGGTTGTTCCGTAAGGA
CCTCAGGCAGGTGTTATTTCACGCGGCACAGTCACTCAAGTACGTGGCTT
TTGATGATGACTGGCGTGAGTACATGAACTCGAATTACAAACAGTTGTGT
CGGTTTATGCGCTGTATACTTTTCTACAGCGAGAATGTGTCGCACATACG
CATGCCATCGTTCCTTGTAGAAGAACTGAGCAACAACGAGTTCTCTTCTC
TGCACTGGGAGCAGCTTGTGGCTGTGATGTCGCAGGTTCAAGAGTTGAGA
CATCTCCAGATAACGACTCCGTTTCAGAACGTTTGGTGTTCACAAGCTGA
AATGCTGCATCGAGTGAGGAACTTTTTGGACAGTTGGCCGCTGTTGTTGA
CATGTGCAGCGTGTAGTTTTCCGGAGCTGAAGACGATCTGTCTGCTGTTT
AAGACTGAGAACGAAGAGGCGCTGCCGCGAGAATTGGAAAGTTCGTTGGT
TGCAGCTATGAAGGCCACCGCTGAATTTGAGCAATGCCATCCTGCAGTGG
ATGTGCGAGAAGTACAGGCGCGTTTGGAAATGTGGTTGATTGCAATGAGG
CGAAGCGGGTAG
back to top