Ggra431.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra431.t1
Unique NameGgra431.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length427
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000036_piloncontigtig00000036_pilon:72553..73986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra431Ggra431Gracilaria gracilis GNS1m malegenetig00000036_pilon 72553..73986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra431.t1Ggra431.t1Gracilaria gracilis GNS1m malepolypeptidetig00000036_pilon 72553..73986 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra431.t1.stop1Ggra431.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000036_pilon 72553..72555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra431.t1.CDS1Ggra431.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000036_pilon 72553..73522 -
Ggra431.t1.CDS2Ggra431.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000036_pilon 73572..73856 -
Ggra431.t1.CDS3Ggra431.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000036_pilon 73961..73986 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra431.t1.exon1Ggra431.t1.exon1Gracilaria gracilis GNS1m maleexontig00000036_pilon 72553..73522 -
Ggra431.t1.exon2Ggra431.t1.exon2Gracilaria gracilis GNS1m maleexontig00000036_pilon 73572..73856 -
Ggra431.t1.exon3Ggra431.t1.exon3Gracilaria gracilis GNS1m maleexontig00000036_pilon 73961..73986 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra431.t1.intron1Ggra431.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000036_pilon 73523..73571 -
Ggra431.t1.intron2Ggra431.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000036_pilon 73857..73960 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra431.t1.start1Ggra431.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000036_pilon 73984..73986 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra431.t1 ID=Ggra431.t1|Name=Ggra431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=427bp
MALLAPTLALHRGHSVSVAGHRIDRYNLLQTLKSGRLVSVSVLLLVTALA
YTAELSLEYAVDSEAIRYTIPATVTRVQTTSGVCSRAQILATGNAFDLGP
IADKVTDDGLSVLCEPVEENLLYEGEGVYGAYTVSKQSPQVLQLVQSLSD
NSPDSFGDEWLPLMMLNVTSRDVFQTHSFTTPSEEFRGSFFATNITGTSV
QCLGFTAGRQRQDTFVVQVVGCVDGFNDNSSLVLTYGTSSVRIESASDEW
STLVAFEVHTRVLHYFRGIREGRPNSNADPGAYASYLARALPQDVINLNK
NAIVYRFCDDVTLPLRNGTSWEEEYDFAGSEERVTATVEEWGIVLAVCWV
VVVTAAHLVVSRVAAWKKMPDKLLGEQEILRRWAEEKNAKLAEGETEAFL
SVQQGSKSTHITATLKPVGKADNSGT*
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spliced messenger RNA

>Ggra431.t1 ID=Ggra431.t1|Name=Ggra431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000036_pilon:72553..73986- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTTCTCGCACCAACATTGGCTCTTCATCGCGGCCATTCGGTTTC
CGTAGCAGGCCACCGAATAGACCGCTACAATCTGCTCCAAACGCTGAAAT
CCGGCCGTCTCGTGTCGGTCTCGGTGCTGCTGCTGGTCACCGCGCTCGCG
TATACCGCAGAGCTTTCGCTCGAGTACGCCGTGGACTCGGAGGCCATTCG
CTACACGATTCCAGCCACCGTCACGCGCGTGCAAACCACTTCTGGTGTTT
GCTCGCGGGCGCAGATTCTCGCAACCGGAAACGCCTTCGACCTAGGGCCC
ATCGCCGATAAAGTTACGGACGATGGATTGAGCGTACTTTGTGAACCCGT
GGAGGAGAACTTGCTGTACGAAGGGGAAGGTGTGTATGGCGCTTATACTG
TGAGCAAACAGTCTCCGCAAGTGCTGCAGCTGGTGCAGTCCTTGAGCGAC
AACTCGCCAGACTCATTTGGAGACGAGTGGCTCCCGCTCATGATGCTGAA
CGTAACTTCCAGAGACGTGTTCCAGACACATTCGTTTACTACGCCCTCGG
AGGAGTTCAGAGGTTCGTTCTTCGCGACGAATATCACCGGCACCTCTGTG
CAGTGCCTCGGCTTCACGGCCGGGCGTCAACGCCAAGACACGTTTGTGGT
GCAAGTGGTGGGCTGCGTCGATGGTTTCAATGATAACAGTTCGCTCGTGC
TCACGTACGGGACGAGCTCTGTTCGCATAGAGTCTGCGAGCGATGAATGG
AGCACGTTGGTGGCGTTTGAAGTGCATACGCGCGTCTTGCATTACTTTAG
GGGAATAAGAGAAGGTCGACCCAACTCCAACGCAGACCCAGGAGCGTACG
CGTCGTATCTTGCTCGCGCGCTGCCTCAAGATGTGATCAACCTCAACAAG
AATGCGATCGTATATCGGTTTTGCGATGATGTAACGCTGCCGTTAAGGAA
CGGCACTTCGTGGGAGGAAGAGTACGACTTCGCGGGCTCCGAGGAACGGG
TGACAGCGACGGTGGAAGAATGGGGCATCGTGCTGGCGGTTTGCTGGGTG
GTGGTGGTGACGGCGGCTCACTTGGTGGTGTCGAGGGTGGCGGCTTGGAA
GAAGATGCCCGACAAATTACTCGGGGAGCAGGAAATCCTTCGTCGATGGG
CTGAAGAAAAAAATGCCAAGCTAGCGGAAGGAGAGACGGAGGCGTTTCTG
TCGGTTCAACAAGGATCGAAGAGCACGCATATCACTGCCACTCTGAAACC
TGTAGGAAAGGCGGACAATTCCGGGACTTGA
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protein sequence of Ggra431.t1

>Ggra431.t1 ID=Ggra431.t1|Name=Ggra431.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MALLAPTLALHRGHSVSVAGHRIDRYNLLQTLKSGRLVSVSVLLLVTALA
YTAELSLEYAVDSEAIRYTIPATVTRVQTTSGVCSRAQILATGNAFDLGP
IADKVTDDGLSVLCEPVEENLLYEGEGVYGAYTVSKQSPQVLQLVQSLSD
NSPDSFGDEWLPLMMLNVTSRDVFQTHSFTTPSEEFRGSFFATNITGTSV
QCLGFTAGRQRQDTFVVQVVGCVDGFNDNSSLVLTYGTSSVRIESASDEW
STLVAFEVHTRVLHYFRGIREGRPNSNADPGAYASYLARALPQDVINLNK
NAIVYRFCDDVTLPLRNGTSWEEEYDFAGSEERVTATVEEWGIVLAVCWV
VVVTAAHLVVSRVAAWKKMPDKLLGEQEILRRWAEEKNAKLAEGETEAFL
SVQQGSKSTHITATLKPVGKADNSGT*
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mRNA from alignment at tig00000036_pilon:72553..73986-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra431.t1 ID=Ggra431.t1|Name=Ggra431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000036_pilon:72553..73986- (Gracilaria gracilis GNS1m male)
ATGGCACTTCTCGCACCAACATTGGCGTGAGTGTCTTCAACATCCTTCGG
TACCTCGCCCTGAACATCGTGCTCGACATCATAGTGCGAAAGAGTCTCGA
CAGTTTTGAACACTTCCGTCGCCGCTTTAGTCTTCATCGCGGCCATTCGG
TTTCCGTAGCAGGCCACCGAATAGACCGCTACAATCTGCTCCAAACGCTG
AAATCCGGCCGTCTCGTGTCGGTCTCGGTGCTGCTGCTGGTCACCGCGCT
CGCGTATACCGCAGAGCTTTCGCTCGAGTACGCCGTGGACTCGGAGGCCA
TTCGCTACACGATTCCAGCCACCGTCACGCGCGTGCAAACCACTTCTGGT
GTTTGCTCGCGGGCGCAGATTCTCGCAACCGGAAACGCCTTCGACCTAGG
GCCCATCGCCGATAAGTGCGTCACGTTGGAAGACAACAAATACCGGAAAA
GGCACCGACGATAGAGTTACGGACGATGGATTGAGCGTACTTTGTGAACC
CGTGGAGGAGAACTTGCTGTACGAAGGGGAAGGTGTGTATGGCGCTTATA
CTGTGAGCAAACAGTCTCCGCAAGTGCTGCAGCTGGTGCAGTCCTTGAGC
GACAACTCGCCAGACTCATTTGGAGACGAGTGGCTCCCGCTCATGATGCT
GAACGTAACTTCCAGAGACGTGTTCCAGACACATTCGTTTACTACGCCCT
CGGAGGAGTTCAGAGGTTCGTTCTTCGCGACGAATATCACCGGCACCTCT
GTGCAGTGCCTCGGCTTCACGGCCGGGCGTCAACGCCAAGACACGTTTGT
GGTGCAAGTGGTGGGCTGCGTCGATGGTTTCAATGATAACAGTTCGCTCG
TGCTCACGTACGGGACGAGCTCTGTTCGCATAGAGTCTGCGAGCGATGAA
TGGAGCACGTTGGTGGCGTTTGAAGTGCATACGCGCGTCTTGCATTACTT
TAGGGGAATAAGAGAAGGTCGACCCAACTCCAACGCAGACCCAGGAGCGT
ACGCGTCGTATCTTGCTCGCGCGCTGCCTCAAGATGTGATCAACCTCAAC
AAGAATGCGATCGTATATCGGTTTTGCGATGATGTAACGCTGCCGTTAAG
GAACGGCACTTCGTGGGAGGAAGAGTACGACTTCGCGGGCTCCGAGGAAC
GGGTGACAGCGACGGTGGAAGAATGGGGCATCGTGCTGGCGGTTTGCTGG
GTGGTGGTGGTGACGGCGGCTCACTTGGTGGTGTCGAGGGTGGCGGCTTG
GAAGAAGATGCCCGACAAATTACTCGGGGAGCAGGAAATCCTTCGTCGAT
GGGCTGAAGAAAAAAATGCCAAGCTAGCGGAAGGAGAGACGGAGGCGTTT
CTGTCGGTTCAACAAGGATCGAAGAGCACGCATATCACTGCCACTCTGAA
ACCTGTAGGAAAGGCGGACAATTCCGGGACTTGA
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Coding sequence (CDS) from alignment at tig00000036_pilon:72553..73986-

>Ggra431.t1 ID=Ggra431.t1|Name=Ggra431.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000036_pilon:72553..73986- (Gracilaria gracilis GNS1m male)
ATGGCACTTCTCGCACCAACATTGGCTCTTCATCGCGGCCATTCGGTTTC
CGTAGCAGGCCACCGAATAGACCGCTACAATCTGCTCCAAACGCTGAAAT
CCGGCCGTCTCGTGTCGGTCTCGGTGCTGCTGCTGGTCACCGCGCTCGCG
TATACCGCAGAGCTTTCGCTCGAGTACGCCGTGGACTCGGAGGCCATTCG
CTACACGATTCCAGCCACCGTCACGCGCGTGCAAACCACTTCTGGTGTTT
GCTCGCGGGCGCAGATTCTCGCAACCGGAAACGCCTTCGACCTAGGGCCC
ATCGCCGATAAAGTTACGGACGATGGATTGAGCGTACTTTGTGAACCCGT
GGAGGAGAACTTGCTGTACGAAGGGGAAGGTGTGTATGGCGCTTATACTG
TGAGCAAACAGTCTCCGCAAGTGCTGCAGCTGGTGCAGTCCTTGAGCGAC
AACTCGCCAGACTCATTTGGAGACGAGTGGCTCCCGCTCATGATGCTGAA
CGTAACTTCCAGAGACGTGTTCCAGACACATTCGTTTACTACGCCCTCGG
AGGAGTTCAGAGGTTCGTTCTTCGCGACGAATATCACCGGCACCTCTGTG
CAGTGCCTCGGCTTCACGGCCGGGCGTCAACGCCAAGACACGTTTGTGGT
GCAAGTGGTGGGCTGCGTCGATGGTTTCAATGATAACAGTTCGCTCGTGC
TCACGTACGGGACGAGCTCTGTTCGCATAGAGTCTGCGAGCGATGAATGG
AGCACGTTGGTGGCGTTTGAAGTGCATACGCGCGTCTTGCATTACTTTAG
GGGAATAAGAGAAGGTCGACCCAACTCCAACGCAGACCCAGGAGCGTACG
CGTCGTATCTTGCTCGCGCGCTGCCTCAAGATGTGATCAACCTCAACAAG
AATGCGATCGTATATCGGTTTTGCGATGATGTAACGCTGCCGTTAAGGAA
CGGCACTTCGTGGGAGGAAGAGTACGACTTCGCGGGCTCCGAGGAACGGG
TGACAGCGACGGTGGAAGAATGGGGCATCGTGCTGGCGGTTTGCTGGGTG
GTGGTGGTGACGGCGGCTCACTTGGTGGTGTCGAGGGTGGCGGCTTGGAA
GAAGATGCCCGACAAATTACTCGGGGAGCAGGAAATCCTTCGTCGATGGG
CTGAAGAAAAAAATGCCAAGCTAGCGGAAGGAGAGACGGAGGCGTTTCTG
TCGGTTCAACAAGGATCGAAGAGCACGCATATCACTGCCACTCTGAAACC
TGTAGGAAAGGCGGACAATTCCGGGACTTGA
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