Ggra4307.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4307.t1
Unique Name	Ggra4307.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	253

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000022_pilon	contig	tig00000022_pilon:444912..445670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173027.Mic7113_3548
PFAMs	DUF2272
Max annot lvl	1117\|Cyanobacteria
Evalue	1.97e-20
EggNOG OGs	COG4322@1\|root,COG4322@2\|Bacteria,1G9GT@1117\|Cyanobacteria,1HF4A@1150\|Oscillatoriales
Description	protein conserved in bacteria (DUF2272)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4307	Ggra4307	Gracilaria gracilis GNS1m male	gene	tig00000022_pilon 444912..445670 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4307.t1.start1	Ggra4307.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000022_pilon 444912..444914 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4307.t1.CDS1	Ggra4307.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000022_pilon 444912..445670 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4307.t1.exon1	Ggra4307.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000022_pilon 444912..445670 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4307.t1.stop1	Ggra4307.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000022_pilon 445668..445670 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4307.t1	Ggra4307.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000022_pilon 444912..445670 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000022_pilon:444912..445670+
coding sequence from alignment at tig00000022_pilon:444912..445670+

mRNA sequence

>Ggra4307.t1 ID=Ggra4307.t1|Name=Ggra4307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MFVSLTLLVSMLLFHVAFAANYCGTSFTNARKCETSCPRGLDGECPGLER
CFAGVSCRQPPSTMPVPDQATGFASDIVSTTNSEYDTYKNLHECFSSTME
ARIGDYWSALGLNLDGCDRDTPWSAAFVSFMVREAGGGTSFRYSSAHRVY
IHDAFAGGRGLYNSVRNIDSTTVSTGDLACSGRGRVRSWDYADFEDWYGN
GGTAHDAIPTHCDIVVQVSGTTITVVGGNVNQRVTRNTVDKSTYAILLPV
TR*

spliced messenger RNA

>Ggra4307.t1 ID=Ggra4307.t1|Name=Ggra4307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000022_pilon:444912..445670+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTTTCACTTACGCTTCTGGTCTCCATGCTACTGTTCCATGTTGC
GTTCGCGGCAAATTACTGCGGGACGTCGTTCACGAACGCTAGAAAGTGCG
AAACCTCTTGCCCACGCGGCTTGGACGGCGAGTGTCCAGGTCTGGAGCGA
TGCTTCGCGGGCGTAAGCTGTCGCCAGCCTCCCTCTACGATGCCTGTACC
GGATCAGGCCACTGGTTTTGCCTCTGATATTGTTTCCACCACTAATAGCG
AGTACGATACGTACAAGAATCTGCACGAGTGTTTCTCGTCCACAATGGAG
GCGCGCATCGGGGACTACTGGAGCGCACTTGGACTCAATCTAGATGGGTG
CGATCGCGACACGCCTTGGTCGGCTGCCTTTGTCTCCTTCATGGTTCGTG
AGGCCGGTGGCGGCACCAGCTTCCGTTACTCGAGTGCTCACCGCGTCTAC
ATTCATGACGCTTTTGCCGGTGGCCGAGGTTTGTACAATTCTGTGCGCAA
TATTGACAGCACAACCGTCAGCACCGGAGATCTTGCATGCTCGGGACGTG
GACGTGTTCGTTCGTGGGACTATGCCGATTTTGAAGACTGGTACGGCAAC
GGTGGAACAGCACACGACGCAATTCCAACTCATTGTGACATTGTTGTGCA
AGTTAGTGGCACGACAATCACTGTCGTTGGGGGTAACGTTAATCAGCGTG
TAACACGCAACACGGTCGACAAGTCAACATATGCGATTCTTCTACCTGTG
ACACGTTAG

protein sequence of Ggra4307.t1

>Ggra4307.t1 ID=Ggra4307.t1|Name=Ggra4307.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MFVSLTLLVSMLLFHVAFAANYCGTSFTNARKCETSCPRGLDGECPGLER
CFAGVSCRQPPSTMPVPDQATGFASDIVSTTNSEYDTYKNLHECFSSTME
ARIGDYWSALGLNLDGCDRDTPWSAAFVSFMVREAGGGTSFRYSSAHRVY
IHDAFAGGRGLYNSVRNIDSTTVSTGDLACSGRGRVRSWDYADFEDWYGN
GGTAHDAIPTHCDIVVQVSGTTITVVGGNVNQRVTRNTVDKSTYAILLPV
TR*

mRNA from alignment at tig00000022_pilon:444912..445670+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4307.t1 ID=Ggra4307.t1|Name=Ggra4307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000022_pilon:444912..445670+ (Gracilaria gracilis GNS1m male)
ATGTTCGTTTCACTTACGCTTCTGGTCTCCATGCTACTGTTCCATGTTGC
GTTCGCGGCAAATTACTGCGGGACGTCGTTCACGAACGCTAGAAAGTGCG
AAACCTCTTGCCCACGCGGCTTGGACGGCGAGTGTCCAGGTCTGGAGCGA
TGCTTCGCGGGCGTAAGCTGTCGCCAGCCTCCCTCTACGATGCCTGTACC
GGATCAGGCCACTGGTTTTGCCTCTGATATTGTTTCCACCACTAATAGCG
AGTACGATACGTACAAGAATCTGCACGAGTGTTTCTCGTCCACAATGGAG
GCGCGCATCGGGGACTACTGGAGCGCACTTGGACTCAATCTAGATGGGTG
CGATCGCGACACGCCTTGGTCGGCTGCCTTTGTCTCCTTCATGGTTCGTG
AGGCCGGTGGCGGCACCAGCTTCCGTTACTCGAGTGCTCACCGCGTCTAC
ATTCATGACGCTTTTGCCGGTGGCCGAGGTTTGTACAATTCTGTGCGCAA
TATTGACAGCACAACCGTCAGCACCGGAGATCTTGCATGCTCGGGACGTG
GACGTGTTCGTTCGTGGGACTATGCCGATTTTGAAGACTGGTACGGCAAC
GGTGGAACAGCACACGACGCAATTCCAACTCATTGTGACATTGTTGTGCA
AGTTAGTGGCACGACAATCACTGTCGTTGGGGGTAACGTTAATCAGCGTG
TAACACGCAACACGGTCGACAAGTCAACATATGCGATTCTTCTACCTGTG
ACACGTTAG

Coding sequence (CDS) from alignment at tig00000022_pilon:444912..445670+

>Ggra4307.t1 ID=Ggra4307.t1|Name=Ggra4307.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000022_pilon:444912..445670+ (Gracilaria gracilis GNS1m male)
ATGTTCGTTTCACTTACGCTTCTGGTCTCCATGCTACTGTTCCATGTTGC
GTTCGCGGCAAATTACTGCGGGACGTCGTTCACGAACGCTAGAAAGTGCG
AAACCTCTTGCCCACGCGGCTTGGACGGCGAGTGTCCAGGTCTGGAGCGA
TGCTTCGCGGGCGTAAGCTGTCGCCAGCCTCCCTCTACGATGCCTGTACC
GGATCAGGCCACTGGTTTTGCCTCTGATATTGTTTCCACCACTAATAGCG
AGTACGATACGTACAAGAATCTGCACGAGTGTTTCTCGTCCACAATGGAG
GCGCGCATCGGGGACTACTGGAGCGCACTTGGACTCAATCTAGATGGGTG
CGATCGCGACACGCCTTGGTCGGCTGCCTTTGTCTCCTTCATGGTTCGTG
AGGCCGGTGGCGGCACCAGCTTCCGTTACTCGAGTGCTCACCGCGTCTAC
ATTCATGACGCTTTTGCCGGTGGCCGAGGTTTGTACAATTCTGTGCGCAA
TATTGACAGCACAACCGTCAGCACCGGAGATCTTGCATGCTCGGGACGTG
GACGTGTTCGTTCGTGGGACTATGCCGATTTTGAAGACTGGTACGGCAAC
GGTGGAACAGCACACGACGCAATTCCAACTCATTGTGACATTGTTGTGCA
AGTTAGTGGCACGACAATCACTGTCGTTGGGGGTAACGTTAATCAGCGTG
TAACACGCAACACGGTCGACAAGTCAACATATGCGATTCTTCTACCTGTG
ACACGTTAG