Ggra4305.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4305.t1
Unique NameGgra4305.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:430750..432045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog392500.Swoo_4891
PFAMsLactonase
Max annot lvl1224|Proteobacteria
Evalue3.19e-22
EggNOG OGsCOG2706@1|root,COG2706@2|Bacteria,1NG69@1224|Proteobacteria
DescriptionLactonase, 7-bladed beta-propeller
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4305Ggra4305Gracilaria gracilis GNS1m malegenetig00000022_pilon 430750..432045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4305.t1Ggra4305.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 430750..432045 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4305.t1.start1Ggra4305.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 430750..430752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4305.t1.CDS1Ggra4305.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 430750..430939 +
Ggra4305.t1.CDS2Ggra4305.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000022_pilon 431255..432045 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4305.t1.exon1Ggra4305.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 430750..430939 +
Ggra4305.t1.exon2Ggra4305.t1.exon2Gracilaria gracilis GNS1m maleexontig00000022_pilon 431255..432045 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4305.t1.intron1Ggra4305.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000022_pilon 430940..431254 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4305.t1.stop1Ggra4305.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 432043..432045 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4305.t1 ID=Ggra4305.t1|Name=Ggra4305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MALVHVPLFFTALLTTCLLLCVEGDQKYRSPVAILPPEFVGGVYAMSNDV
TENTMIVYARRSNGVLEGFVLTGSGKLVPIPWSRRELTFRPSTIQFSPDG
RFLVVSDTFSSATAVATGSFNEIVVFRVTGFFGFLSLSPVSEAVSTELGN
PEGRNLPTAFGFEIVKSGGVQYVVVPEVRNFPSAEGIMPMNTTSSISTWR
LGSDGSLSPVQLDLLIGSSVTMGQNASCWIEFSADMDNFWTSNTFSASVS
AFSFANGISTLEEEVAATGPGPVDLWRSKDGKFLYQLFSGAVGAYEISEA
GSGAGLTLIQLPMNVPEMNPQGIVAF*
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spliced messenger RNA

>Ggra4305.t1 ID=Ggra4305.t1|Name=Ggra4305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000022_pilon:430750..432045+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTGGTTCACGTCCCATTGTTCTTCACCGCTTTGCTAACGACTTG
CCTACTCCTATGTGTGGAGGGAGACCAAAAGTACCGATCACCGGTAGCCA
TCTTACCCCCGGAATTCGTAGGAGGTGTGTACGCCATGTCCAATGATGTT
ACCGAGAACACAATGATTGTTTATGCGCGTCGCAGTAATGgagTTCTGGA
AGGATTTGTTCTGACTGGCTCCGGGAAACTGGTCCCCATCCCGTGGAGTC
GCCGAGAACTCACTTTCAGGCCATCTACGATCCAATTTTCGCCTGATGGT
CGCTTTTTGGTTGTGTCTGACACATTTTCTAGTGCCACCGCTGTCGCAAC
TGGTAGTTTTAACGAGATCGTGGTCTTCCGTGTGACGGGTTTCTTTGGCT
TCCTCAGTTTGAGTCCCGTGTCTGAAGCAGTATCAACAGAACTGGGCAAT
CCGGAAGGTCGCAATCTCCCGACAGCATTTGGTTTCGAAATTGTTAAGTC
TGGAGGCGTGCAGTATGTGGTTGTTCCAGAGGTCCGGAATTTTCCAAGTG
CCGAAGGCATAATGCCCATGAACACAACTTCTTCTATCTCTACGTGGCGC
CTTGGCTCCGATGGGAGTCTGTCCCCAGTGCAACTCGACTTGCTCATCGG
ATCATCTGTGACAATGGGGCAAAATGCATCTTGTTGGATTGAGTTCTCGG
CTGACATGGATAACTTTTGGACGTCTAATACCTTCTCCGCGTCTGTGTCT
GCTTTCTCATTCGCAAATGGGATTTCTACTCTTGAAGAAGAAGTTGCCGC
AACTGGGCCAGGTCCCGTTGACCTATGGCGATCCAAAGATGGCAAATTCT
TGTATCAACTGTTTTCCGGAGCTGTTGGGGCTTACGAGATATCAGAGGCG
GGGTCTGGAGCAGGCCTTACGTTAATCCAGCTACCGATGAATGTTCCTGA
AATGAATCCTCAGGGAATCGTTGCGTTCTAA
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protein sequence of Ggra4305.t1

>Ggra4305.t1 ID=Ggra4305.t1|Name=Ggra4305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MALVHVPLFFTALLTTCLLLCVEGDQKYRSPVAILPPEFVGGVYAMSNDV
TENTMIVYARRSNGVLEGFVLTGSGKLVPIPWSRRELTFRPSTIQFSPDG
RFLVVSDTFSSATAVATGSFNEIVVFRVTGFFGFLSLSPVSEAVSTELGN
PEGRNLPTAFGFEIVKSGGVQYVVVPEVRNFPSAEGIMPMNTTSSISTWR
LGSDGSLSPVQLDLLIGSSVTMGQNASCWIEFSADMDNFWTSNTFSASVS
AFSFANGISTLEEEVAATGPGPVDLWRSKDGKFLYQLFSGAVGAYEISEA
GSGAGLTLIQLPMNVPEMNPQGIVAF*
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mRNA from alignment at tig00000022_pilon:430750..432045+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4305.t1 ID=Ggra4305.t1|Name=Ggra4305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000022_pilon:430750..432045+ (Gracilaria gracilis GNS1m male)
ATGGCATTGGTTCACGTCCCATTGTTCTTCACCGCTTTGCTAACGACTTG
CCTACTCCTATGTGTGGAGGGAGACCAAAAGTACCGATCACCGGTAGCCA
TCTTACCCCCGGAATTCGTAGGAGGTGTGTACGCCATGTCCAATGATGTT
ACCGAGAACACAATGATTGTTTATGCGCGTCGCAGTAATGGTACGCTCGT
ATTGCTAGATCCTGCTTTGAAGACGGGGGGAACCGGCGCATTCTTCCCTC
CGAGCATGGGTACCAACCCGCTGTTTTCGGCGTTCTCCGTTATTATCACA
GATGACaaccgattcgtactggctgttaatgctggcagcagctcggtttc
agtctttaaagtgctccgcgacttctctcttcgtcttgtgcatgtacaac
ccgttgatgcgttcgcaccaagctctattgctatcaagggaaggctggtc
tatgttgcaagtgccgacgcagacggtgagtttgatgatcccttctttct
ggaaggagTTCTGGAAGGATTTGTTCTGACTGGCTCCGGGAAACTGGTCC
CCATCCCGTGGAGTCGCCGAGAACTCACTTTCAGGCCATCTACGATCCAA
TTTTCGCCTGATGGTCGCTTTTTGGTTGTGTCTGACACATTTTCTAGTGC
CACCGCTGTCGCAACTGGTAGTTTTAACGAGATCGTGGTCTTCCGTGTGA
CGGGTTTCTTTGGCTTCCTCAGTTTGAGTCCCGTGTCTGAAGCAGTATCA
ACAGAACTGGGCAATCCGGAAGGTCGCAATCTCCCGACAGCATTTGGTTT
CGAAATTGTTAAGTCTGGAGGCGTGCAGTATGTGGTTGTTCCAGAGGTCC
GGAATTTTCCAAGTGCCGAAGGCATAATGCCCATGAACACAACTTCTTCT
ATCTCTACGTGGCGCCTTGGCTCCGATGGGAGTCTGTCCCCAGTGCAACT
CGACTTGCTCATCGGATCATCTGTGACAATGGGGCAAAATGCATCTTGTT
GGATTGAGTTCTCGGCTGACATGGATAACTTTTGGACGTCTAATACCTTC
TCCGCGTCTGTGTCTGCTTTCTCATTCGCAAATGGGATTTCTACTCTTGA
AGAAGAAGTTGCCGCAACTGGGCCAGGTCCCGTTGACCTATGGCGATCCA
AAGATGGCAAATTCTTGTATCAACTGTTTTCCGGAGCTGTTGGGGCTTAC
GAGATATCAGAGGCGGGGTCTGGAGCAGGCCTTACGTTAATCCAGCTACC
GATGAATGTTCCTGAAATGAATCCTCAGGGAATCGTTGCGTTCTAA
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Coding sequence (CDS) from alignment at tig00000022_pilon:430750..432045+

>Ggra4305.t1 ID=Ggra4305.t1|Name=Ggra4305.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000022_pilon:430750..432045+ (Gracilaria gracilis GNS1m male)
ATGGCATTGGTTCACGTCCCATTGTTCTTCACCGCTTTGCTAACGACTTG
CCTACTCCTATGTGTGGAGGGAGACCAAAAGTACCGATCACCGGTAGCCA
TCTTACCCCCGGAATTCGTAGGAGGTGTGTACGCCATGTCCAATGATGTT
ACCGAGAACACAATGATTGTTTATGCGCGTCGCAGTAATGgagTTCTGGA
AGGATTTGTTCTGACTGGCTCCGGGAAACTGGTCCCCATCCCGTGGAGTC
GCCGAGAACTCACTTTCAGGCCATCTACGATCCAATTTTCGCCTGATGGT
CGCTTTTTGGTTGTGTCTGACACATTTTCTAGTGCCACCGCTGTCGCAAC
TGGTAGTTTTAACGAGATCGTGGTCTTCCGTGTGACGGGTTTCTTTGGCT
TCCTCAGTTTGAGTCCCGTGTCTGAAGCAGTATCAACAGAACTGGGCAAT
CCGGAAGGTCGCAATCTCCCGACAGCATTTGGTTTCGAAATTGTTAAGTC
TGGAGGCGTGCAGTATGTGGTTGTTCCAGAGGTCCGGAATTTTCCAAGTG
CCGAAGGCATAATGCCCATGAACACAACTTCTTCTATCTCTACGTGGCGC
CTTGGCTCCGATGGGAGTCTGTCCCCAGTGCAACTCGACTTGCTCATCGG
ATCATCTGTGACAATGGGGCAAAATGCATCTTGTTGGATTGAGTTCTCGG
CTGACATGGATAACTTTTGGACGTCTAATACCTTCTCCGCGTCTGTGTCT
GCTTTCTCATTCGCAAATGGGATTTCTACTCTTGAAGAAGAAGTTGCCGC
AACTGGGCCAGGTCCCGTTGACCTATGGCGATCCAAAGATGGCAAATTCT
TGTATCAACTGTTTTCCGGAGCTGTTGGGGCTTACGAGATATCAGAGGCG
GGGTCTGGAGCAGGCCTTACGTTAATCCAGCTACCGATGAATGTTCCTGA
AATGAATCCTCAGGGAATCGTTGCGTTCTAA
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