Ggra430.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra430.t1
Unique NameGgra430.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000036_piloncontigtig00000036_pilon:69627..70271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra430Ggra430Gracilaria gracilis GNS1m malegenetig00000036_pilon 69627..70271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra430.t1Ggra430.t1Gracilaria gracilis GNS1m malepolypeptidetig00000036_pilon 69627..70271 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra430.t1.start1Ggra430.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000036_pilon 69627..69629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra430.t1.CDS1Ggra430.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000036_pilon 69627..69668 +
Ggra430.t1.CDS2Ggra430.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000036_pilon 69924..70271 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra430.t1.exon1Ggra430.t1.exon1Gracilaria gracilis GNS1m maleexontig00000036_pilon 69627..69668 +
Ggra430.t1.exon2Ggra430.t1.exon2Gracilaria gracilis GNS1m maleexontig00000036_pilon 69924..70271 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra430.t1.intron1Ggra430.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000036_pilon 69669..69923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra430.t1.stop1Ggra430.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000036_pilon 70269..70271 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra430.t1 ID=Ggra430.t1|Name=Ggra430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=130bp
MGDSVFWWVSLLNAQQITVLNSYPYSYNLSEAVNVGQIERIVPDYVIRKS
RLVDDSSALLRAFGCSAQVISQNAHQARYDDVLDNMDIEDEDALHSRLLQ
YAEDRNKLGLKKAFDFGRDDNDTQQLCGV*
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spliced messenger RNA

>Ggra430.t1 ID=Ggra430.t1|Name=Ggra430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=390bp|location=Sequence derived from alignment at tig00000036_pilon:69627..70271+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACAGTGTATTCTGGTGGGTGTCGTTGTTGAATGCTCAACAGAT
CACGGTACTCAACTCGTATCCATACTCGTACAACCTAAGCGAAGCCGTTA
ATGTGGGGCAGATTGAACGAATCGTACCGGACTACGTGATTCGGAAATCG
AGGTTGGTGGATGATAGTTCCGCCCTTCTTCGTGCGTTCGGGTGTTCTGC
GCAAGTAATCAGTCAGAATGCACATCAGGCACGGTACGACGACGTGCTCG
ATAATATGGATATTGAAGATGAGGACGCGTTGCACTCTCGACTTTTGCAG
TACGCTGAGGATCGGAACAAGTTGGGTCTGAAGAAGGCGTTTGATTTTGG
TCGTGACGATAATGACACTCAGCAACTGTGTGGAGTGTAA
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protein sequence of Ggra430.t1

>Ggra430.t1 ID=Ggra430.t1|Name=Ggra430.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=130bp
MGDSVFWWVSLLNAQQITVLNSYPYSYNLSEAVNVGQIERIVPDYVIRKS
RLVDDSSALLRAFGCSAQVISQNAHQARYDDVLDNMDIEDEDALHSRLLQ
YAEDRNKLGLKKAFDFGRDDNDTQQLCGV*
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mRNA from alignment at tig00000036_pilon:69627..70271+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra430.t1 ID=Ggra430.t1|Name=Ggra430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000036_pilon:69627..70271+ (Gracilaria gracilis GNS1m male)
ATGGGCGACAGTGTATTCTGGTGGGTGTCGTTGTTGAATGCTGtatgtcg
ttttcatcactgcgttcaatgctaatccagtcagtactgaaatatattga
cgttgggtgtaaggtagtgaaggttggagcagactggtactgaacatctt
tacagaaccaggaccgacgcactgtcgataactagactaagagtagctcc
actcctggagtgagctttctacttatactagctagatggtcgtgacgtat
tcacaggtagtggtcgtaatgcagaagtggacgccactatattacaGCAA
CAGATCACGGTACTCAACTCGTATCCATACTCGTACAACCTAAGCGAAGC
CGTTAATGTGGGGCAGATTGAACGAATCGTACCGGACTACGTGATTCGGA
AATCGAGGTTGGTGGATGATAGTTCCGCCCTTCTTCGTGCGTTCGGGTGT
TCTGCGCAAGTAATCAGTCAGAATGCACATCAGGCACGGTACGACGACGT
GCTCGATAATATGGATATTGAAGATGAGGACGCGTTGCACTCTCGACTTT
TGCAGTACGCTGAGGATCGGAACAAGTTGGGTCTGAAGAAGGCGTTTGAT
TTTGGTCGTGACGATAATGACACTCAGCAACTGTGTGGAGTGTAA
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Coding sequence (CDS) from alignment at tig00000036_pilon:69627..70271+

>Ggra430.t1 ID=Ggra430.t1|Name=Ggra430.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=390bp|location=Sequence derived from alignment at tig00000036_pilon:69627..70271+ (Gracilaria gracilis GNS1m male)
ATGGGCGACAGTGTATTCTGGTGGGTGTCGTTGTTGAATGCTCAACAGAT
CACGGTACTCAACTCGTATCCATACTCGTACAACCTAAGCGAAGCCGTTA
ATGTGGGGCAGATTGAACGAATCGTACCGGACTACGTGATTCGGAAATCG
AGGTTGGTGGATGATAGTTCCGCCCTTCTTCGTGCGTTCGGGTGTTCTGC
GCAAGTAATCAGTCAGAATGCACATCAGGCACGGTACGACGACGTGCTCG
ATAATATGGATATTGAAGATGAGGACGCGTTGCACTCTCGACTTTTGCAG
TACGCTGAGGATCGGAACAAGTTGGGTCTGAAGAAGGCGTTTGATTTTGG
TCGTGACGATAATGACACTCAGCAACTGTGTGGAGTGTAA
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