Ggra4299.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4299.t1
Unique Name	Ggra4299.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000022_pilon	contig	tig00000022_pilon:292923..294248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4299	Ggra4299	Gracilaria gracilis GNS1m male	gene	tig00000022_pilon 292923..294248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4299.t1.start1	Ggra4299.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000022_pilon 292923..292925 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4299.t1.CDS1	Ggra4299.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000022_pilon 292923..294248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4299.t1.exon1	Ggra4299.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000022_pilon 292923..294248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4299.t1.stop1	Ggra4299.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000022_pilon 294246..294248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4299.t1	Ggra4299.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000022_pilon 292923..294248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000022_pilon:292923..294248+
coding sequence from alignment at tig00000022_pilon:292923..294248+

mRNA sequence

>Ggra4299.t1 ID=Ggra4299.t1|Name=Ggra4299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=442bp
MVLSQKLLAIAALLLFAAGSSANMLNDDGQYGPQCRSKRTFPFVSCNPQC
APYSLDVHSRCQTKQQFGCSYRKCSPHNFHCHLDPQAASNNQCPNGEVQV
RHVTLRPNFPVEFDLAVNLKGVDLDVVLLIDASESTRPRVNAVKNELSSF
VRQLEGAAHVGVAVYGGEESFDEKGIQVLSPAAEDVQSALNALENIPTYP
DGPRTTLTALHSVQRYGRDLSLRHWRTIVVLIGDTPGREPECSLLFDRDA
ISRSLFEYSSGISVMPVSLGGTGLDGARPPIQPCANGFGPTEPQAVEAGQ
ATKIAEETNGEVVSSATAAALLETVDRVRRKANRVHQSAPGADISISTAS
VVPVNQPYYPHMERINGCEDKVIVSMTGIPSFVSEPADITAKVKLDLPAG
ICQRGPFSCTIRVMDAVRGSETMSHGSGSITYYKKISVRAC*

spliced messenger RNA

>Ggra4299.t1 ID=Ggra4299.t1|Name=Ggra4299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000022_pilon:292923..294248+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTATCTCAAAAACTACTCGCCATTGCCGCTCTCCTGCTCTTCGC
GGCCGGGTCCTCCGCGAATATGCTTAACGACGATGGACAATATGGCCCTC
AGTGTCGCAGCAAGAGAACATTTCCCTTCGTCTCGTGCAATCCTCAATGC
GCCCCTTACTCTCTAGACGTGCACAGCCGGTGTCAAACAAAACAACAGTT
TGGATGCTCGTACCGAAAATGTTCCCCACACAACTTCCATTGCCACTTAG
ATCCTCAGGCTGCGTCCAACAACCAATGCCCGAATGGCGAAGTTCAAGTC
AGACACGTGACCCTCAGACCCAATTTCCCCGTGGAATTCGACCTCGCTGT
CAACCTCAAAGGCGTGGATCTCGATGTCGTGTTGCTTATCGACGCAAGTG
AGTCAACCAGACCTCGTGTGAACGCGGTTAAGAATGAACTGAGCTCATTT
GTGAGGCAGCTTGAGGGAGCCGCTCATGTTGGTGTAGCCGTATATGGTGG
AGAGGAATCCTTTGATGAGAAGGGAATTCAAGTACTGTCCCCTGCTGCGG
AAGATGTCCAGTCTGCCCTTAATGCTCTTGAGAACATCCCGACCTACCCC
GATGGACCCCGCACAACCTTGACTGCTCTCCATTCAGTTCAGCGTTATGG
ACGAGACCTCTCGCTCCGACACTGGAGAACGATTGTTGTTCTAATTGGCG
ATACGCCTGGTCGAGAACCGGAATGCTCGCTCCTGTTTGACCGTGATGCA
ATTTCAAGATCGTTGTTCGAGTATTCGAGCGGTATCTCAGTTATGCCAGT
GAGCTTAGGTGGAACCGGATTGGATGGCGCTCGTCCTCCAATTCAGCCTT
GTGCAAACGGCTTCGGTCCCACGGAACCGCAGGCGGTTGAAGCCGGTCAG
GCCACTAAGATTGCAGAAGAAACAAACGGGGAAGTTGTATCATCCGCCAC
TGCTGCAGCCCTTCTCGAAACAGTCGATCGCGTACGAAGAAAGGCAAACA
GAGTGCACCAATCCGCACCTGGGGCTGACATTTCCATCTCTACCGCCAGC
GTTGTGCCTGTTAATCAGCCCTATTATCCTCACATGGAGCGCATTAACGG
ATGCGAGGATAAGGTGATTGTGAGCATGACGGGGATTCCAAGCTTTGTAA
GCGAGCCTGCGGATATTACTGCGAAGGTTAAACTAGATCTTCCAGCAGGT
ATTTGCCAGCGTGGTCCGTTCAGCTGTACGATTCGTGTGATGGATGCAGT
CCGTGGATCCGAAACCATGAGTCATGGGTCGGGATCTATCACCTACTACA
AGAAGATTTCAGTTCGGGCTTGCTAG

protein sequence of Ggra4299.t1

>Ggra4299.t1 ID=Ggra4299.t1|Name=Ggra4299.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=442bp
MVLSQKLLAIAALLLFAAGSSANMLNDDGQYGPQCRSKRTFPFVSCNPQC
APYSLDVHSRCQTKQQFGCSYRKCSPHNFHCHLDPQAASNNQCPNGEVQV
RHVTLRPNFPVEFDLAVNLKGVDLDVVLLIDASESTRPRVNAVKNELSSF
VRQLEGAAHVGVAVYGGEESFDEKGIQVLSPAAEDVQSALNALENIPTYP
DGPRTTLTALHSVQRYGRDLSLRHWRTIVVLIGDTPGREPECSLLFDRDA
ISRSLFEYSSGISVMPVSLGGTGLDGARPPIQPCANGFGPTEPQAVEAGQ
ATKIAEETNGEVVSSATAAALLETVDRVRRKANRVHQSAPGADISISTAS
VVPVNQPYYPHMERINGCEDKVIVSMTGIPSFVSEPADITAKVKLDLPAG
ICQRGPFSCTIRVMDAVRGSETMSHGSGSITYYKKISVRAC*

mRNA from alignment at tig00000022_pilon:292923..294248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4299.t1 ID=Ggra4299.t1|Name=Ggra4299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000022_pilon:292923..294248+ (Gracilaria gracilis GNS1m male)
ATGGTTTTATCTCAAAAACTACTCGCCATTGCCGCTCTCCTGCTCTTCGC
GGCCGGGTCCTCCGCGAATATGCTTAACGACGATGGACAATATGGCCCTC
AGTGTCGCAGCAAGAGAACATTTCCCTTCGTCTCGTGCAATCCTCAATGC
GCCCCTTACTCTCTAGACGTGCACAGCCGGTGTCAAACAAAACAACAGTT
TGGATGCTCGTACCGAAAATGTTCCCCACACAACTTCCATTGCCACTTAG
ATCCTCAGGCTGCGTCCAACAACCAATGCCCGAATGGCGAAGTTCAAGTC
AGACACGTGACCCTCAGACCCAATTTCCCCGTGGAATTCGACCTCGCTGT
CAACCTCAAAGGCGTGGATCTCGATGTCGTGTTGCTTATCGACGCAAGTG
AGTCAACCAGACCTCGTGTGAACGCGGTTAAGAATGAACTGAGCTCATTT
GTGAGGCAGCTTGAGGGAGCCGCTCATGTTGGTGTAGCCGTATATGGTGG
AGAGGAATCCTTTGATGAGAAGGGAATTCAAGTACTGTCCCCTGCTGCGG
AAGATGTCCAGTCTGCCCTTAATGCTCTTGAGAACATCCCGACCTACCCC
GATGGACCCCGCACAACCTTGACTGCTCTCCATTCAGTTCAGCGTTATGG
ACGAGACCTCTCGCTCCGACACTGGAGAACGATTGTTGTTCTAATTGGCG
ATACGCCTGGTCGAGAACCGGAATGCTCGCTCCTGTTTGACCGTGATGCA
ATTTCAAGATCGTTGTTCGAGTATTCGAGCGGTATCTCAGTTATGCCAGT
GAGCTTAGGTGGAACCGGATTGGATGGCGCTCGTCCTCCAATTCAGCCTT
GTGCAAACGGCTTCGGTCCCACGGAACCGCAGGCGGTTGAAGCCGGTCAG
GCCACTAAGATTGCAGAAGAAACAAACGGGGAAGTTGTATCATCCGCCAC
TGCTGCAGCCCTTCTCGAAACAGTCGATCGCGTACGAAGAAAGGCAAACA
GAGTGCACCAATCCGCACCTGGGGCTGACATTTCCATCTCTACCGCCAGC
GTTGTGCCTGTTAATCAGCCCTATTATCCTCACATGGAGCGCATTAACGG
ATGCGAGGATAAGGTGATTGTGAGCATGACGGGGATTCCAAGCTTTGTAA
GCGAGCCTGCGGATATTACTGCGAAGGTTAAACTAGATCTTCCAGCAGGT
ATTTGCCAGCGTGGTCCGTTCAGCTGTACGATTCGTGTGATGGATGCAGT
CCGTGGATCCGAAACCATGAGTCATGGGTCGGGATCTATCACCTACTACA
AGAAGATTTCAGTTCGGGCTTGCTAG

Coding sequence (CDS) from alignment at tig00000022_pilon:292923..294248+

>Ggra4299.t1 ID=Ggra4299.t1|Name=Ggra4299.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000022_pilon:292923..294248+ (Gracilaria gracilis GNS1m male)
ATGGTTTTATCTCAAAAACTACTCGCCATTGCCGCTCTCCTGCTCTTCGC
GGCCGGGTCCTCCGCGAATATGCTTAACGACGATGGACAATATGGCCCTC
AGTGTCGCAGCAAGAGAACATTTCCCTTCGTCTCGTGCAATCCTCAATGC
GCCCCTTACTCTCTAGACGTGCACAGCCGGTGTCAAACAAAACAACAGTT
TGGATGCTCGTACCGAAAATGTTCCCCACACAACTTCCATTGCCACTTAG
ATCCTCAGGCTGCGTCCAACAACCAATGCCCGAATGGCGAAGTTCAAGTC
AGACACGTGACCCTCAGACCCAATTTCCCCGTGGAATTCGACCTCGCTGT
CAACCTCAAAGGCGTGGATCTCGATGTCGTGTTGCTTATCGACGCAAGTG
AGTCAACCAGACCTCGTGTGAACGCGGTTAAGAATGAACTGAGCTCATTT
GTGAGGCAGCTTGAGGGAGCCGCTCATGTTGGTGTAGCCGTATATGGTGG
AGAGGAATCCTTTGATGAGAAGGGAATTCAAGTACTGTCCCCTGCTGCGG
AAGATGTCCAGTCTGCCCTTAATGCTCTTGAGAACATCCCGACCTACCCC
GATGGACCCCGCACAACCTTGACTGCTCTCCATTCAGTTCAGCGTTATGG
ACGAGACCTCTCGCTCCGACACTGGAGAACGATTGTTGTTCTAATTGGCG
ATACGCCTGGTCGAGAACCGGAATGCTCGCTCCTGTTTGACCGTGATGCA
ATTTCAAGATCGTTGTTCGAGTATTCGAGCGGTATCTCAGTTATGCCAGT
GAGCTTAGGTGGAACCGGATTGGATGGCGCTCGTCCTCCAATTCAGCCTT
GTGCAAACGGCTTCGGTCCCACGGAACCGCAGGCGGTTGAAGCCGGTCAG
GCCACTAAGATTGCAGAAGAAACAAACGGGGAAGTTGTATCATCCGCCAC
TGCTGCAGCCCTTCTCGAAACAGTCGATCGCGTACGAAGAAAGGCAAACA
GAGTGCACCAATCCGCACCTGGGGCTGACATTTCCATCTCTACCGCCAGC
GTTGTGCCTGTTAATCAGCCCTATTATCCTCACATGGAGCGCATTAACGG
ATGCGAGGATAAGGTGATTGTGAGCATGACGGGGATTCCAAGCTTTGTAA
GCGAGCCTGCGGATATTACTGCGAAGGTTAAACTAGATCTTCCAGCAGGT
ATTTGCCAGCGTGGTCCGTTCAGCTGTACGATTCGTGTGATGGATGCAGT
CCGTGGATCCGAAACCATGAGTCATGGGTCGGGATCTATCACCTACTACA
AGAAGATTTCAGTTCGGGCTTGCTAG