Ggra4295.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4295.t1
Unique NameGgra4295.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:214130..215206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene2665
PFAMsOxidored_FMN
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00250
KEGG koko:K10680
KEGG ReactionR08014,R08017,R08042
KEGG Pathwayko00633,ko01120,map00633,map01120
Evalue1.1e-123
EggNOG OGsCOG1902@1|root,COG1902@2|Bacteria,1FZYT@1117|Cyanobacteria,3VIN3@52604|Pleurocapsales
DescriptionNADH:flavin oxidoreductase / NADH oxidase family
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4295Ggra4295Gracilaria gracilis GNS1m malegenetig00000022_pilon 214130..215206 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4295.t1.stop1Ggra4295.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 214130..214132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4295.t1.CDS1Ggra4295.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 214130..215206 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4295.t1.exon1Ggra4295.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 214130..215206 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4295.t1.start1Ggra4295.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 215204..215206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4295.t1Ggra4295.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 214130..215206 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4295.t1 ID=Ggra4295.t1|Name=Ggra4295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MAPLTRGRAGSSCDAYHLLADYYSQRASAGLIISEGAQTSIMARGWFHAP
DIFGSSHAKAWKIVTDMVHQRNGIMFCQLWHCGRASHSSFREREPGYEGK
KAISIAPSAIKRPSSSGKQNHTPRAMEVDIEEPREMSTEEIESLPGEFKN
AAQTAKNGGFDGVEIHSASGFLLDTFLQSCSNKRDDEYGGSLENRFRIID
KILRAVFTVFDSNCVGIRISPNGAYNGMGSDDFREAFLYYASRLNEYGLG
YLHIVIGLDFGFHTKGDPMTLAEFRKVYHGTVIANMGYDAESAEKEIANG
NADLISFGRAFLSNPDLVEKFTTGAELKPMLDPKYWYTSVEHKWTTEGFT
DLNQNYVG*
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spliced messenger RNA

>Ggra4295.t1 ID=Ggra4295.t1|Name=Ggra4295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000022_pilon:214130..215206- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTCTCACGCGCGGCAGGGCGGGATCATCTTGTGATGCCTACCA
TCTTCTTGCAGATTATTATTCTCAGCGTGCCTCAGCAGGACTCATCATAT
CAGAAGGCGCTCAAACTTCTATTATGGCTCGTGGCTGGTTTCACGCCCCT
GATATTTTCGGGTCAAGCCATGCCAAGGCTTGGAAGATCGTCACTGACAT
GGTCCACCAGAGGAATGGTATAATGTTCTGCCAACTGTGGCATTGTGGCC
GCGCCAGCCACTCTTCGTTTCGTGAAAGGGAGCCAGGTTATGAAGGAAAG
AAAGCCATCTCTATCGCTCCATCCGCGATCAAACGCCCATCTTCTTCCGG
AAAACAAAACCATACACCACGGGCGATGGAAGTAGATATCGAGGAACCTC
GCGAAATGAGTACTGAGGAAATCGAGAGCCTCCCAGGAGAGTTTAAAAAT
GCCGCTCAAACAGCTAAGAACGGTGGGTTTGACGGAGTCGAGATTCATAG
TGCCAGCGGATTTCTGCTTGATACATTCTTGCAAAGCTGTTCGAACAAAC
GTGATGATGAATATGGTGGCTCCCTGGAGAACCGCTTCCGTATAATCGAC
AAAATTTTGAGGGCTGTGTTCACAGTTTTCGATTCCAACTGTGTCGGTAT
TCGAATATCCCCGAACGGGGCGTACAATGGTATGGGAAGCGATGACTTTC
GAGAAGCCTTTTTATATTACGCGTCTCGGCTCAATGAGTACGGGCTTGGA
TACTTGCACATTGTGATTGGGCTTGACTTTGGATTTCACACCAAGGGAGA
TCCAATGACCCTTGCAGAATTTAGGAAGGTTTACCATGGAACAGTTATTG
CAAACATGGGGTATGACGCAGAATCCGCTGAGAAGGAAATTGCGAACGGT
AATGCGGATCTCATATCATTTGGCAGAGCATTTCTTAGTAATCCGGATCT
GGTAGAAAAGTTTACGACGGGTGCAGAGTTGAAGCCTATGCTGGACCCTA
AGTACTGGTATACTTCGGTGGAACACAAGTGGACGACTGAGGGATTTACG
GATCTGAACCAGAATTATGTAGGGTAG
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protein sequence of Ggra4295.t1

>Ggra4295.t1 ID=Ggra4295.t1|Name=Ggra4295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MAPLTRGRAGSSCDAYHLLADYYSQRASAGLIISEGAQTSIMARGWFHAP
DIFGSSHAKAWKIVTDMVHQRNGIMFCQLWHCGRASHSSFREREPGYEGK
KAISIAPSAIKRPSSSGKQNHTPRAMEVDIEEPREMSTEEIESLPGEFKN
AAQTAKNGGFDGVEIHSASGFLLDTFLQSCSNKRDDEYGGSLENRFRIID
KILRAVFTVFDSNCVGIRISPNGAYNGMGSDDFREAFLYYASRLNEYGLG
YLHIVIGLDFGFHTKGDPMTLAEFRKVYHGTVIANMGYDAESAEKEIANG
NADLISFGRAFLSNPDLVEKFTTGAELKPMLDPKYWYTSVEHKWTTEGFT
DLNQNYVG*
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mRNA from alignment at tig00000022_pilon:214130..215206-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4295.t1 ID=Ggra4295.t1|Name=Ggra4295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000022_pilon:214130..215206- (Gracilaria gracilis GNS1m male)
ATGGCTCCTCTCACGCGCGGCAGGGCGGGATCATCTTGTGATGCCTACCA
TCTTCTTGCAGATTATTATTCTCAGCGTGCCTCAGCAGGACTCATCATAT
CAGAAGGCGCTCAAACTTCTATTATGGCTCGTGGCTGGTTTCACGCCCCT
GATATTTTCGGGTCAAGCCATGCCAAGGCTTGGAAGATCGTCACTGACAT
GGTCCACCAGAGGAATGGTATAATGTTCTGCCAACTGTGGCATTGTGGCC
GCGCCAGCCACTCTTCGTTTCGTGAAAGGGAGCCAGGTTATGAAGGAAAG
AAAGCCATCTCTATCGCTCCATCCGCGATCAAACGCCCATCTTCTTCCGG
AAAACAAAACCATACACCACGGGCGATGGAAGTAGATATCGAGGAACCTC
GCGAAATGAGTACTGAGGAAATCGAGAGCCTCCCAGGAGAGTTTAAAAAT
GCCGCTCAAACAGCTAAGAACGGTGGGTTTGACGGAGTCGAGATTCATAG
TGCCAGCGGATTTCTGCTTGATACATTCTTGCAAAGCTGTTCGAACAAAC
GTGATGATGAATATGGTGGCTCCCTGGAGAACCGCTTCCGTATAATCGAC
AAAATTTTGAGGGCTGTGTTCACAGTTTTCGATTCCAACTGTGTCGGTAT
TCGAATATCCCCGAACGGGGCGTACAATGGTATGGGAAGCGATGACTTTC
GAGAAGCCTTTTTATATTACGCGTCTCGGCTCAATGAGTACGGGCTTGGA
TACTTGCACATTGTGATTGGGCTTGACTTTGGATTTCACACCAAGGGAGA
TCCAATGACCCTTGCAGAATTTAGGAAGGTTTACCATGGAACAGTTATTG
CAAACATGGGGTATGACGCAGAATCCGCTGAGAAGGAAATTGCGAACGGT
AATGCGGATCTCATATCATTTGGCAGAGCATTTCTTAGTAATCCGGATCT
GGTAGAAAAGTTTACGACGGGTGCAGAGTTGAAGCCTATGCTGGACCCTA
AGTACTGGTATACTTCGGTGGAACACAAGTGGACGACTGAGGGATTTACG
GATCTGAACCAGAATTATGTAGGGTAG
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Coding sequence (CDS) from alignment at tig00000022_pilon:214130..215206-

>Ggra4295.t1 ID=Ggra4295.t1|Name=Ggra4295.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000022_pilon:214130..215206- (Gracilaria gracilis GNS1m male)
ATGGCTCCTCTCACGCGCGGCAGGGCGGGATCATCTTGTGATGCCTACCA
TCTTCTTGCAGATTATTATTCTCAGCGTGCCTCAGCAGGACTCATCATAT
CAGAAGGCGCTCAAACTTCTATTATGGCTCGTGGCTGGTTTCACGCCCCT
GATATTTTCGGGTCAAGCCATGCCAAGGCTTGGAAGATCGTCACTGACAT
GGTCCACCAGAGGAATGGTATAATGTTCTGCCAACTGTGGCATTGTGGCC
GCGCCAGCCACTCTTCGTTTCGTGAAAGGGAGCCAGGTTATGAAGGAAAG
AAAGCCATCTCTATCGCTCCATCCGCGATCAAACGCCCATCTTCTTCCGG
AAAACAAAACCATACACCACGGGCGATGGAAGTAGATATCGAGGAACCTC
GCGAAATGAGTACTGAGGAAATCGAGAGCCTCCCAGGAGAGTTTAAAAAT
GCCGCTCAAACAGCTAAGAACGGTGGGTTTGACGGAGTCGAGATTCATAG
TGCCAGCGGATTTCTGCTTGATACATTCTTGCAAAGCTGTTCGAACAAAC
GTGATGATGAATATGGTGGCTCCCTGGAGAACCGCTTCCGTATAATCGAC
AAAATTTTGAGGGCTGTGTTCACAGTTTTCGATTCCAACTGTGTCGGTAT
TCGAATATCCCCGAACGGGGCGTACAATGGTATGGGAAGCGATGACTTTC
GAGAAGCCTTTTTATATTACGCGTCTCGGCTCAATGAGTACGGGCTTGGA
TACTTGCACATTGTGATTGGGCTTGACTTTGGATTTCACACCAAGGGAGA
TCCAATGACCCTTGCAGAATTTAGGAAGGTTTACCATGGAACAGTTATTG
CAAACATGGGGTATGACGCAGAATCCGCTGAGAAGGAAATTGCGAACGGT
AATGCGGATCTCATATCATTTGGCAGAGCATTTCTTAGTAATCCGGATCT
GGTAGAAAAGTTTACGACGGGTGCAGAGTTGAAGCCTATGCTGGACCCTA
AGTACTGGTATACTTCGGTGGAACACAAGTGGACGACTGAGGGATTTACG
GATCTGAACCAGAATTATGTAGGGTAG
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