Ggra4290.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4290.t1
Unique NameGgra4290.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:114575..116008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4290Ggra4290Gracilaria gracilis GNS1m malegenetig00000022_pilon 114575..116008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4290.t1Ggra4290.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 114575..116008 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4290.t1.start1Ggra4290.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 114575..114577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4290.t1.CDS1Ggra4290.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 114575..115240 +
Ggra4290.t1.CDS2Ggra4290.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000022_pilon 115376..116008 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4290.t1.exon1Ggra4290.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 114575..115240 +
Ggra4290.t1.exon2Ggra4290.t1.exon2Gracilaria gracilis GNS1m maleexontig00000022_pilon 115376..116008 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4290.t1.intron1Ggra4290.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000022_pilon 115241..115375 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4290.t1.stop1Ggra4290.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 116006..116008 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4290.t1 ID=Ggra4290.t1|Name=Ggra4290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp
MRQGCLAENRIFYKMQWLTIIAGMLYIKYTTAYPLFKPQNNIATKNPSRL
PNEWLRYGANLPHIARQFLSTPDKCISQSDCTSKQSCLLDPNTGCKSGFC
TGCTTTADCVNRNVCFEQQFGNFCIDEDLVCETTPDCDDDQLCSKQKSDP
LGFCVEKGLFCESDDDCREPETCIIATVGEGLGVCQHTCKNDSDCEDDES
CSVGFCVSTGSPVSDSQVTDPPPTSVSAPTEEMLISPVTTPATTTSAATT
PGATTPTATTTAESTASDLTPTATISMAPKGDSTPKSSPEPTEESPPKSS
LQPSANSTPEPSPPPNADSASAVCVDATALSGFKSHELVFDKHAVSWVLC
DAKESCATAGHMVVFKGKAMMMKTYCDVVGCQRRNMHVNSPRHRNGLRVK
SKTEGLEYTALAARHETWMEEVVLSVVVRVGL*
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spliced messenger RNA

>Ggra4290.t1 ID=Ggra4290.t1|Name=Ggra4290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000022_pilon:114575..116008+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACAAGGTTGTCTAGCCGAGAATCGCATATTCTACAAGATGCAGTG
GCTTACTATTATTGCTGGTATGCTCTACATCAAGTACACCACCGCTTACC
CCCTCTTCAAACCACAGAACAATATCGCCACGAAGAATCCATCCCGTCTT
CCTAATGAGTGGCTTCGTTACGGCGCCAATCTGCCACATATTGCCCGTCA
GTTTCTTTCTACGCCTGATAAATGCATTTCGCAATCTGACTGCACATCAA
AGCAAAGCTGCCTTCTTGATCCCAACACTGGTTGCAAATCGGGCTTCTGT
ACCGGATGCACTACAACTGCTGACTGTGTCAATCGCAACGTATGCTTCGA
GCAGCAGTTTGGTAACTTCTGCATCGACGAAGATCTTGTTTGTGAGACCA
CACCCGATTGCGATGATGACCAACTTTGTTCGAAGCAAAAATCTGATCCA
CTAGGCTTTTGCGTGGAGAAGGGACTGTTTTGTGAATCTGATGACGATTG
TAGAGAGCCGGAGACCTGCATCATTGCTACAGTTGGAGAAGGACTTGGGG
TATGCCAACATACGTGCAAGAACGACTCCGATTGCGAAGATGACGAAAGT
TGCTCGGTTGGGTTCTGTGTCTCCACTGGTTCACCCGTCTCAGATTCGCA
GGTCACAGACCCACCGCCAACATCGGTTTCGGCGCCGACAGAAGAGATGC
TAATTTCACCTGTAACGACTCCTGCTACGACAACTTCTGCTGCAACAACT
CCTGGTGCAACAACTCCGACCGCTACAACCACTGCCGAATCCACGGCTTC
GGACCTGACTCCAACTGCGACAATTTCAATGGCGCCGAAAGGGGATTCTA
CGCCCAAATCGTCACCGGAACCAACCGAAGAGTCTCCGCCCAAGTCATCG
CTGCAACCAAGCGCGAACTCTACGCCTGAACCATCACCACCACCGAACGC
GGATTCGGCGTCTGCAGTCTGTGTAGATGCGACAGCTTTGTCCGGTTTCA
AGAGCCATGAGCTGGTATTCGACAAGCATGCAGTTTCATGGGTGTTATGT
GACGCAAAGGAGAGTTGCGCCACTGCTGGGCATATGGTTGTTTTCAAGGG
CAAGGCGATGATGATGAAAACGTACTGTGATGTGGTTGGATGTCAGAGAA
GAAACATGCACGTGAACAGTCCACGTCACAGGAACGGTTTGAGAGTAAAA
TCGAAGACGGAAGGTCTGGAGTATACGGCGTTAGCGGCGAGGCACGAGAC
CTGGATGGAAGAGGTTGTGCTGAGCGTGGTCGTTCGAGTTGGATTGTAA
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protein sequence of Ggra4290.t1

>Ggra4290.t1 ID=Ggra4290.t1|Name=Ggra4290.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=433bp
MRQGCLAENRIFYKMQWLTIIAGMLYIKYTTAYPLFKPQNNIATKNPSRL
PNEWLRYGANLPHIARQFLSTPDKCISQSDCTSKQSCLLDPNTGCKSGFC
TGCTTTADCVNRNVCFEQQFGNFCIDEDLVCETTPDCDDDQLCSKQKSDP
LGFCVEKGLFCESDDDCREPETCIIATVGEGLGVCQHTCKNDSDCEDDES
CSVGFCVSTGSPVSDSQVTDPPPTSVSAPTEEMLISPVTTPATTTSAATT
PGATTPTATTTAESTASDLTPTATISMAPKGDSTPKSSPEPTEESPPKSS
LQPSANSTPEPSPPPNADSASAVCVDATALSGFKSHELVFDKHAVSWVLC
DAKESCATAGHMVVFKGKAMMMKTYCDVVGCQRRNMHVNSPRHRNGLRVK
SKTEGLEYTALAARHETWMEEVVLSVVVRVGL*
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mRNA from alignment at tig00000022_pilon:114575..116008+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4290.t1 ID=Ggra4290.t1|Name=Ggra4290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000022_pilon:114575..116008+ (Gracilaria gracilis GNS1m male)
ATGAGACAAGGTTGTCTAGCCGAGAATCGCATATTCTACAAGATGCAGTG
GCTTACTATTATTGCTGGTATGCTCTACATCAAGTACACCACCGCTTACC
CCCTCTTCAAACCACAGAACAATATCGCCACGAAGAATCCATCCCGTCTT
CCTAATGAGTGGCTTCGTTACGGCGCCAATCTGCCACATATTGCCCGTCA
GTTTCTTTCTACGCCTGATAAATGCATTTCGCAATCTGACTGCACATCAA
AGCAAAGCTGCCTTCTTGATCCCAACACTGGTTGCAAATCGGGCTTCTGT
ACCGGATGCACTACAACTGCTGACTGTGTCAATCGCAACGTATGCTTCGA
GCAGCAGTTTGGTAACTTCTGCATCGACGAAGATCTTGTTTGTGAGACCA
CACCCGATTGCGATGATGACCAACTTTGTTCGAAGCAAAAATCTGATCCA
CTAGGCTTTTGCGTGGAGAAGGGACTGTTTTGTGAATCTGATGACGATTG
TAGAGAGCCGGAGACCTGCATCATTGCTACAGTTGGAGAAGGACTTGGGG
TATGCCAACATACGTGCAAGAACGACTCCGATTGCGAAGATGACGAAAGT
TGCTCGGTTGGGTTCTGTGTCTCCACTGGTTCACCCGTCTCAGATTCGCA
GGTCACAGACCCACCGGTCACAAGCGCGCCAGTCACGACGGCCTCTTGTA
GCTCCAATGATGATTGTGTACTTGGATTGATATGTGACCCCGACAAGGAA
GGAGAAGAGCGCTTTTGCGTGCTATAAGCCGCATGTGACTCTCCAACAAA
GCCAACATCGGTTTCGGCGCCGACAGAAGAGATGCTAATTTCACCTGTAA
CGACTCCTGCTACGACAACTTCTGCTGCAACAACTCCTGGTGCAACAACT
CCGACCGCTACAACCACTGCCGAATCCACGGCTTCGGACCTGACTCCAAC
TGCGACAATTTCAATGGCGCCGAAAGGGGATTCTACGCCCAAATCGTCAC
CGGAACCAACCGAAGAGTCTCCGCCCAAGTCATCGCTGCAACCAAGCGCG
AACTCTACGCCTGAACCATCACCACCACCGAACGCGGATTCGGCGTCTGC
AGTCTGTGTAGATGCGACAGCTTTGTCCGGTTTCAAGAGCCATGAGCTGG
TATTCGACAAGCATGCAGTTTCATGGGTGTTATGTGACGCAAAGGAGAGT
TGCGCCACTGCTGGGCATATGGTTGTTTTCAAGGGCAAGGCGATGATGAT
GAAAACGTACTGTGATGTGGTTGGATGTCAGAGAAGAAACATGCACGTGA
ACAGTCCACGTCACAGGAACGGTTTGAGAGTAAAATCGAAGACGGAAGGT
CTGGAGTATACGGCGTTAGCGGCGAGGCACGAGACCTGGATGGAAGAGGT
TGTGCTGAGCGTGGTCGTTCGAGTTGGATTGTAA
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Coding sequence (CDS) from alignment at tig00000022_pilon:114575..116008+

>Ggra4290.t1 ID=Ggra4290.t1|Name=Ggra4290.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000022_pilon:114575..116008+ (Gracilaria gracilis GNS1m male)
ATGAGACAAGGTTGTCTAGCCGAGAATCGCATATTCTACAAGATGCAGTG
GCTTACTATTATTGCTGGTATGCTCTACATCAAGTACACCACCGCTTACC
CCCTCTTCAAACCACAGAACAATATCGCCACGAAGAATCCATCCCGTCTT
CCTAATGAGTGGCTTCGTTACGGCGCCAATCTGCCACATATTGCCCGTCA
GTTTCTTTCTACGCCTGATAAATGCATTTCGCAATCTGACTGCACATCAA
AGCAAAGCTGCCTTCTTGATCCCAACACTGGTTGCAAATCGGGCTTCTGT
ACCGGATGCACTACAACTGCTGACTGTGTCAATCGCAACGTATGCTTCGA
GCAGCAGTTTGGTAACTTCTGCATCGACGAAGATCTTGTTTGTGAGACCA
CACCCGATTGCGATGATGACCAACTTTGTTCGAAGCAAAAATCTGATCCA
CTAGGCTTTTGCGTGGAGAAGGGACTGTTTTGTGAATCTGATGACGATTG
TAGAGAGCCGGAGACCTGCATCATTGCTACAGTTGGAGAAGGACTTGGGG
TATGCCAACATACGTGCAAGAACGACTCCGATTGCGAAGATGACGAAAGT
TGCTCGGTTGGGTTCTGTGTCTCCACTGGTTCACCCGTCTCAGATTCGCA
GGTCACAGACCCACCGCCAACATCGGTTTCGGCGCCGACAGAAGAGATGC
TAATTTCACCTGTAACGACTCCTGCTACGACAACTTCTGCTGCAACAACT
CCTGGTGCAACAACTCCGACCGCTACAACCACTGCCGAATCCACGGCTTC
GGACCTGACTCCAACTGCGACAATTTCAATGGCGCCGAAAGGGGATTCTA
CGCCCAAATCGTCACCGGAACCAACCGAAGAGTCTCCGCCCAAGTCATCG
CTGCAACCAAGCGCGAACTCTACGCCTGAACCATCACCACCACCGAACGC
GGATTCGGCGTCTGCAGTCTGTGTAGATGCGACAGCTTTGTCCGGTTTCA
AGAGCCATGAGCTGGTATTCGACAAGCATGCAGTTTCATGGGTGTTATGT
GACGCAAAGGAGAGTTGCGCCACTGCTGGGCATATGGTTGTTTTCAAGGG
CAAGGCGATGATGATGAAAACGTACTGTGATGTGGTTGGATGTCAGAGAA
GAAACATGCACGTGAACAGTCCACGTCACAGGAACGGTTTGAGAGTAAAA
TCGAAGACGGAAGGTCTGGAGTATACGGCGTTAGCGGCGAGGCACGAGAC
CTGGATGGAAGAGGTTGTGCTGAGCGTGGTCGTTCGAGTTGGATTGTAA
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