Ggra4289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4289.t1
Unique Name	Ggra4289.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	815

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000022_pilon	contig	tig00000022_pilon:102277..104721 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4289	Ggra4289	Gracilaria gracilis GNS1m male	gene	tig00000022_pilon 102277..104721 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4289.t1.stop1	Ggra4289.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000022_pilon 102277..102279 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4289.t1.CDS1	Ggra4289.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000022_pilon 102277..104721 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4289.t1.exon1	Ggra4289.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000022_pilon 102277..104721 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4289.t1.start1	Ggra4289.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000022_pilon 104719..104721 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4289.t1	Ggra4289.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000022_pilon 102277..104721 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000022_pilon:102277..104721-
coding sequence from alignment at tig00000022_pilon:102277..104721-

mRNA sequence

>Ggra4289.t1 ID=Ggra4289.t1|Name=Ggra4289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=815bp
MPSSRTEDPFKPFSFTASANYSLPPIEHQIIECLKHLQREIPSIPSHNTT
IPTIVISALLSVNAWPCEPQVRSKKRSADPDPLSISTRNRILEIGSAAWS
DPDKPVARAPLTKYWRREVRTKTRPFRSSVQQHRWKTSLPPIDLFPVDNL
NLTEPRDGPEEVWSAQSVHALSGRRIVLSYVHDRRADTHIKWKRSRRSVR
LTQTEATHASRPQFLCSLQCINLDDLWHDGMKYPTPDGKRNGYAGVVPYM
LPGSAVWHSVPRLRKGYGYPSLGEQKLDSILNIFAELRSGKRHLAAIHNV
EIQFAVDEPYRDLSGVRRLWLMAEATCGMLRDDLIVSVQDMAGVALTLMH
YDNIVSELNRVIKHRNDTSKIKRKAKIPCICQPRGFSTWKQLCTVGEGAR
AILEQTLAGSGLDKKQISLFEHATLAFDVRVRLLKFWYSLMFAKGPITNL
PDLRFEVLEDLAVAPAWEPEDRSMVYFMVEAAVINRLERQIPYEESVQRF
LRAEHGGTLLLNSVNVRSERVAMEMTRVQLESMLLYNLAAAMRQPGCWRP
THMALKTAWLSGQEGPSYLGRFTTSMSKHLYIQAARSWAGHSDEVIVRTA
TEGKSRMVVLLSDKHRLNRYIDVDSKTEIIVCSIFFMNEEEYNLALSHFG
KSHFHAEERMFRGKPVLTGSAGEPVLWDKTLKTLCAVDKKGRWFQLPSPQ
RLYQTVVTSKIGAEDGHLAAIRIARNGDEREPVAVSPGHIMRHITAEGGH
KLFQMRPDQVSPDGMNIGDYSFEYERFWTDCDGRKLSTMTAADARTIDDV
VDQMIASLRTKHWK*

spliced messenger RNA

>Ggra4289.t1 ID=Ggra4289.t1|Name=Ggra4289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2445bp|location=Sequence derived from alignment at tig00000022_pilon:102277..104721- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCTCGCGAACTGAAGACCCTTTCAAACCGTTTTCCTTCACCGC
TTCCGCCAACTACAGTCTCCCTCCCATCGAACATCAAATCATAGAATGCC
TCAAACATCTTCAACGCGAAATACCCTCTATCCCTTCTCACAACACTACC
ATCCCTACAATTGTCATTTCCGCCCTGCTCTCTGTCAATGCGTGGCCCTG
TGAGCCCCAAGTCCGGTCTAAAAAGCGCTCCGCCGACCCGGACCCTCTCT
CCATTTCAACTCGAAACCGCATTCTGGAAATTGGCTCTGCAGCGTGGTCC
GATCCCGATAAACCTGTGGCACGTGCTCCTCTCACAAAGTACTGGAGGCG
CGAAGTGCGCACGAAAACCAGACCTTTTCGCTCTAGTGTGCAACAGCATA
GATGGAAAACTTCCTTACCGCCCATCGACCTCTTCCCAGTTGATAATCTC
AACTTGACAGAACCGCGGGATGGCCCAGAAGAGGTGTGGTCCGCCCAGTC
CGTCCATGCCTTGTCCGGCAGGCGCATCGTCCTTTCTTACGTCCATGACA
GGCGAGCAGATACTCATATCAAATGGAAACGAAGCAGGAGGTCTGTAAGA
CTCACCCAAACTGAGGCGACCCACGCCTCCCGTCCGCAATTCCTTTGCAG
CCTTCAATGTATCAATCTCGATGATCTTTGGCATGATGGAATGAAGTATC
CTACCCCAGACGGAAAACGCAACGGTTATGCTGGTGTTGTCCCGTACATG
TTGCCGGGCTCTGCCGTCTGGCATTCTGTCCCAAGGCTTCGCAAGGGATA
CGGTTACCCGTCCTTGGGGGAGCAAAAGCTGGACAGTATTCTCAATATCT
TCGCAGAGTTGAGGTCGGGCAAGAGGCACCTTGCTGCAATTCACAACGTG
GAGATTCAGTTTGCAGTTGATGAGCCATATAGAGATTTGTCCGGTGTAAG
AAGACTGTGGCTCATGGCTGAGGCAACTTGTGGAATGTTGAGAGATGACC
TGATAGTATCTGTTCAGGATATGGCGGGCGTAGCCCTCACCTTGATGCAC
TACGATAACATTGTCTCAGAGCTCAATAGAGTGATCAAGCATCGTAATGA
CACCTCAAAGATAAAGAGGAAGGCAAAAATTCCGTGCATCTGCCAACCGC
GAGGGTTTTCGACATGGAAACAACTTTGCACTGTTGGGGAAGGGGCCCGA
GCGATTCTAGAGCAGACTTTGGCCGGCTCAGGTCTGGATAAGAAACAGAT
ATCCTTGTTCGAGCATGCGACACTGGCCTTCGACGTCAGGGTGAGACTAT
TGAAGTTCTGGTACTCCCTCATGTTCGCAAAGGGCCCGATAACCAATCTA
CCAGATTTAAGGTTTGAAGTCCTTGAGGACCTAGCAGTTGCGCCTGCATG
GGAACCTGAGGATAGGTCCATGGTTTACTTCATGGTTGAAGCGGCCGTCA
TCAATCGCTTGGAACGTCAAATCCCTTACGAGGAGTCAGTTCAACGTTTC
CTAAGAGCCGAACATGGAGGAACATTGTTGTTGAACTCTGTCAACGTGAG
ATCAGAGCGTGTAGCTATGGAAATGACTCGCGTTCAACTTGAAAGCATGC
TCCTCTACAATTTGGCGGCAGCCATGAGGCAACCTGGTTGTTGGAGGCCG
ACGCACATGGCTCTGAAGACAGCGTGGCTGTCAGGGCAGGAAGGCCCTTC
GTATCTTGGACGTTTTACAACGTCTATGTCAAAGCACCTTTACATTCAAG
CCGCACGTAGCTGGGCCGGGCATAGCGATGAGGTGATTGTGAGGACTGCA
ACAGAGGGAAAGAGCCGCATGGTTGTGCTTCTCAGTGATAAGCACCGGTT
GAATAGATATATTGACGTTGACTCGAAGACTGAGATTATTGTATGCTCCA
TCTTCTTCATGAATGAAGAGGAGTATAACCTGGCTTTATCACACTTTGGA
AAGTCTCATTTTCACGCAGAGGAGCGGATGTTCAGAGGCAAACCTGTATT
GACTGGTTCCGCAGGCGAGCCAGTGTTGTGGGACAAAACTCTAAAGACCC
TGTGCGCAGTGGATAAAAAAGGGCGTTGGTTCCAGCTGCCTTCTCCACAG
CGACTGTATCAGACTGTTGTGACCAGCAAGATTGGAGCTGAAGATGGGCA
CTTGGCCGCCATCAGAATCGCTCGTAATGGAGATGAGCGAGAACCCGTGG
CTGTAAGTCCTGGTCACATCATGCGCCACATCACAGCTGAAGGTGGACAT
AAGTTGTTTCAGATGCGACCGGATCAGGTAAGCCCTGACGGAATGAACAT
TGGCGACTATTCTTTCGAGTACGAGAGGTTTTGGACTGATTGTGATGGCA
GAAAGCTATCGACTATGACTGCTGCAGACGCGCGGACGATCGATGATGTA
GTGGACCAAATGATTGCATCACTGAGAACAAAGCATTGGAAATGA

protein sequence of Ggra4289.t1

>Ggra4289.t1 ID=Ggra4289.t1|Name=Ggra4289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=815bp
MPSSRTEDPFKPFSFTASANYSLPPIEHQIIECLKHLQREIPSIPSHNTT
IPTIVISALLSVNAWPCEPQVRSKKRSADPDPLSISTRNRILEIGSAAWS
DPDKPVARAPLTKYWRREVRTKTRPFRSSVQQHRWKTSLPPIDLFPVDNL
NLTEPRDGPEEVWSAQSVHALSGRRIVLSYVHDRRADTHIKWKRSRRSVR
LTQTEATHASRPQFLCSLQCINLDDLWHDGMKYPTPDGKRNGYAGVVPYM
LPGSAVWHSVPRLRKGYGYPSLGEQKLDSILNIFAELRSGKRHLAAIHNV
EIQFAVDEPYRDLSGVRRLWLMAEATCGMLRDDLIVSVQDMAGVALTLMH
YDNIVSELNRVIKHRNDTSKIKRKAKIPCICQPRGFSTWKQLCTVGEGAR
AILEQTLAGSGLDKKQISLFEHATLAFDVRVRLLKFWYSLMFAKGPITNL
PDLRFEVLEDLAVAPAWEPEDRSMVYFMVEAAVINRLERQIPYEESVQRF
LRAEHGGTLLLNSVNVRSERVAMEMTRVQLESMLLYNLAAAMRQPGCWRP
THMALKTAWLSGQEGPSYLGRFTTSMSKHLYIQAARSWAGHSDEVIVRTA
TEGKSRMVVLLSDKHRLNRYIDVDSKTEIIVCSIFFMNEEEYNLALSHFG
KSHFHAEERMFRGKPVLTGSAGEPVLWDKTLKTLCAVDKKGRWFQLPSPQ
RLYQTVVTSKIGAEDGHLAAIRIARNGDEREPVAVSPGHIMRHITAEGGH
KLFQMRPDQVSPDGMNIGDYSFEYERFWTDCDGRKLSTMTAADARTIDDV
VDQMIASLRTKHWK*

mRNA from alignment at tig00000022_pilon:102277..104721-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4289.t1 ID=Ggra4289.t1|Name=Ggra4289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2445bp|location=Sequence derived from alignment at tig00000022_pilon:102277..104721- (Gracilaria gracilis GNS1m male)
ATGCCCAGCTCGCGAACTGAAGACCCTTTCAAACCGTTTTCCTTCACCGC
TTCCGCCAACTACAGTCTCCCTCCCATCGAACATCAAATCATAGAATGCC
TCAAACATCTTCAACGCGAAATACCCTCTATCCCTTCTCACAACACTACC
ATCCCTACAATTGTCATTTCCGCCCTGCTCTCTGTCAATGCGTGGCCCTG
TGAGCCCCAAGTCCGGTCTAAAAAGCGCTCCGCCGACCCGGACCCTCTCT
CCATTTCAACTCGAAACCGCATTCTGGAAATTGGCTCTGCAGCGTGGTCC
GATCCCGATAAACCTGTGGCACGTGCTCCTCTCACAAAGTACTGGAGGCG
CGAAGTGCGCACGAAAACCAGACCTTTTCGCTCTAGTGTGCAACAGCATA
GATGGAAAACTTCCTTACCGCCCATCGACCTCTTCCCAGTTGATAATCTC
AACTTGACAGAACCGCGGGATGGCCCAGAAGAGGTGTGGTCCGCCCAGTC
CGTCCATGCCTTGTCCGGCAGGCGCATCGTCCTTTCTTACGTCCATGACA
GGCGAGCAGATACTCATATCAAATGGAAACGAAGCAGGAGGTCTGTAAGA
CTCACCCAAACTGAGGCGACCCACGCCTCCCGTCCGCAATTCCTTTGCAG
CCTTCAATGTATCAATCTCGATGATCTTTGGCATGATGGAATGAAGTATC
CTACCCCAGACGGAAAACGCAACGGTTATGCTGGTGTTGTCCCGTACATG
TTGCCGGGCTCTGCCGTCTGGCATTCTGTCCCAAGGCTTCGCAAGGGATA
CGGTTACCCGTCCTTGGGGGAGCAAAAGCTGGACAGTATTCTCAATATCT
TCGCAGAGTTGAGGTCGGGCAAGAGGCACCTTGCTGCAATTCACAACGTG
GAGATTCAGTTTGCAGTTGATGAGCCATATAGAGATTTGTCCGGTGTAAG
AAGACTGTGGCTCATGGCTGAGGCAACTTGTGGAATGTTGAGAGATGACC
TGATAGTATCTGTTCAGGATATGGCGGGCGTAGCCCTCACCTTGATGCAC
TACGATAACATTGTCTCAGAGCTCAATAGAGTGATCAAGCATCGTAATGA
CACCTCAAAGATAAAGAGGAAGGCAAAAATTCCGTGCATCTGCCAACCGC
GAGGGTTTTCGACATGGAAACAACTTTGCACTGTTGGGGAAGGGGCCCGA
GCGATTCTAGAGCAGACTTTGGCCGGCTCAGGTCTGGATAAGAAACAGAT
ATCCTTGTTCGAGCATGCGACACTGGCCTTCGACGTCAGGGTGAGACTAT
TGAAGTTCTGGTACTCCCTCATGTTCGCAAAGGGCCCGATAACCAATCTA
CCAGATTTAAGGTTTGAAGTCCTTGAGGACCTAGCAGTTGCGCCTGCATG
GGAACCTGAGGATAGGTCCATGGTTTACTTCATGGTTGAAGCGGCCGTCA
TCAATCGCTTGGAACGTCAAATCCCTTACGAGGAGTCAGTTCAACGTTTC
CTAAGAGCCGAACATGGAGGAACATTGTTGTTGAACTCTGTCAACGTGAG
ATCAGAGCGTGTAGCTATGGAAATGACTCGCGTTCAACTTGAAAGCATGC
TCCTCTACAATTTGGCGGCAGCCATGAGGCAACCTGGTTGTTGGAGGCCG
ACGCACATGGCTCTGAAGACAGCGTGGCTGTCAGGGCAGGAAGGCCCTTC
GTATCTTGGACGTTTTACAACGTCTATGTCAAAGCACCTTTACATTCAAG
CCGCACGTAGCTGGGCCGGGCATAGCGATGAGGTGATTGTGAGGACTGCA
ACAGAGGGAAAGAGCCGCATGGTTGTGCTTCTCAGTGATAAGCACCGGTT
GAATAGATATATTGACGTTGACTCGAAGACTGAGATTATTGTATGCTCCA
TCTTCTTCATGAATGAAGAGGAGTATAACCTGGCTTTATCACACTTTGGA
AAGTCTCATTTTCACGCAGAGGAGCGGATGTTCAGAGGCAAACCTGTATT
GACTGGTTCCGCAGGCGAGCCAGTGTTGTGGGACAAAACTCTAAAGACCC
TGTGCGCAGTGGATAAAAAAGGGCGTTGGTTCCAGCTGCCTTCTCCACAG
CGACTGTATCAGACTGTTGTGACCAGCAAGATTGGAGCTGAAGATGGGCA
CTTGGCCGCCATCAGAATCGCTCGTAATGGAGATGAGCGAGAACCCGTGG
CTGTAAGTCCTGGTCACATCATGCGCCACATCACAGCTGAAGGTGGACAT
AAGTTGTTTCAGATGCGACCGGATCAGGTAAGCCCTGACGGAATGAACAT
TGGCGACTATTCTTTCGAGTACGAGAGGTTTTGGACTGATTGTGATGGCA
GAAAGCTATCGACTATGACTGCTGCAGACGCGCGGACGATCGATGATGTA
GTGGACCAAATGATTGCATCACTGAGAACAAAGCATTGGAAATGA

Coding sequence (CDS) from alignment at tig00000022_pilon:102277..104721-

>Ggra4289.t1 ID=Ggra4289.t1|Name=Ggra4289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2445bp|location=Sequence derived from alignment at tig00000022_pilon:102277..104721- (Gracilaria gracilis GNS1m male)
ATGCCCAGCTCGCGAACTGAAGACCCTTTCAAACCGTTTTCCTTCACCGC
TTCCGCCAACTACAGTCTCCCTCCCATCGAACATCAAATCATAGAATGCC
TCAAACATCTTCAACGCGAAATACCCTCTATCCCTTCTCACAACACTACC
ATCCCTACAATTGTCATTTCCGCCCTGCTCTCTGTCAATGCGTGGCCCTG
TGAGCCCCAAGTCCGGTCTAAAAAGCGCTCCGCCGACCCGGACCCTCTCT
CCATTTCAACTCGAAACCGCATTCTGGAAATTGGCTCTGCAGCGTGGTCC
GATCCCGATAAACCTGTGGCACGTGCTCCTCTCACAAAGTACTGGAGGCG
CGAAGTGCGCACGAAAACCAGACCTTTTCGCTCTAGTGTGCAACAGCATA
GATGGAAAACTTCCTTACCGCCCATCGACCTCTTCCCAGTTGATAATCTC
AACTTGACAGAACCGCGGGATGGCCCAGAAGAGGTGTGGTCCGCCCAGTC
CGTCCATGCCTTGTCCGGCAGGCGCATCGTCCTTTCTTACGTCCATGACA
GGCGAGCAGATACTCATATCAAATGGAAACGAAGCAGGAGGTCTGTAAGA
CTCACCCAAACTGAGGCGACCCACGCCTCCCGTCCGCAATTCCTTTGCAG
CCTTCAATGTATCAATCTCGATGATCTTTGGCATGATGGAATGAAGTATC
CTACCCCAGACGGAAAACGCAACGGTTATGCTGGTGTTGTCCCGTACATG
TTGCCGGGCTCTGCCGTCTGGCATTCTGTCCCAAGGCTTCGCAAGGGATA
CGGTTACCCGTCCTTGGGGGAGCAAAAGCTGGACAGTATTCTCAATATCT
TCGCAGAGTTGAGGTCGGGCAAGAGGCACCTTGCTGCAATTCACAACGTG
GAGATTCAGTTTGCAGTTGATGAGCCATATAGAGATTTGTCCGGTGTAAG
AAGACTGTGGCTCATGGCTGAGGCAACTTGTGGAATGTTGAGAGATGACC
TGATAGTATCTGTTCAGGATATGGCGGGCGTAGCCCTCACCTTGATGCAC
TACGATAACATTGTCTCAGAGCTCAATAGAGTGATCAAGCATCGTAATGA
CACCTCAAAGATAAAGAGGAAGGCAAAAATTCCGTGCATCTGCCAACCGC
GAGGGTTTTCGACATGGAAACAACTTTGCACTGTTGGGGAAGGGGCCCGA
GCGATTCTAGAGCAGACTTTGGCCGGCTCAGGTCTGGATAAGAAACAGAT
ATCCTTGTTCGAGCATGCGACACTGGCCTTCGACGTCAGGGTGAGACTAT
TGAAGTTCTGGTACTCCCTCATGTTCGCAAAGGGCCCGATAACCAATCTA
CCAGATTTAAGGTTTGAAGTCCTTGAGGACCTAGCAGTTGCGCCTGCATG
GGAACCTGAGGATAGGTCCATGGTTTACTTCATGGTTGAAGCGGCCGTCA
TCAATCGCTTGGAACGTCAAATCCCTTACGAGGAGTCAGTTCAACGTTTC
CTAAGAGCCGAACATGGAGGAACATTGTTGTTGAACTCTGTCAACGTGAG
ATCAGAGCGTGTAGCTATGGAAATGACTCGCGTTCAACTTGAAAGCATGC
TCCTCTACAATTTGGCGGCAGCCATGAGGCAACCTGGTTGTTGGAGGCCG
ACGCACATGGCTCTGAAGACAGCGTGGCTGTCAGGGCAGGAAGGCCCTTC
GTATCTTGGACGTTTTACAACGTCTATGTCAAAGCACCTTTACATTCAAG
CCGCACGTAGCTGGGCCGGGCATAGCGATGAGGTGATTGTGAGGACTGCA
ACAGAGGGAAAGAGCCGCATGGTTGTGCTTCTCAGTGATAAGCACCGGTT
GAATAGATATATTGACGTTGACTCGAAGACTGAGATTATTGTATGCTCCA
TCTTCTTCATGAATGAAGAGGAGTATAACCTGGCTTTATCACACTTTGGA
AAGTCTCATTTTCACGCAGAGGAGCGGATGTTCAGAGGCAAACCTGTATT
GACTGGTTCCGCAGGCGAGCCAGTGTTGTGGGACAAAACTCTAAAGACCC
TGTGCGCAGTGGATAAAAAAGGGCGTTGGTTCCAGCTGCCTTCTCCACAG
CGACTGTATCAGACTGTTGTGACCAGCAAGATTGGAGCTGAAGATGGGCA
CTTGGCCGCCATCAGAATCGCTCGTAATGGAGATGAGCGAGAACCCGTGG
CTGTAAGTCCTGGTCACATCATGCGCCACATCACAGCTGAAGGTGGACAT
AAGTTGTTTCAGATGCGACCGGATCAGGTAAGCCCTGACGGAATGAACAT
TGGCGACTATTCTTTCGAGTACGAGAGGTTTTGGACTGATTGTGATGGCA
GAAAGCTATCGACTATGACTGCTGCAGACGCGCGGACGATCGATGATGTA
GTGGACCAAATGATTGCATCACTGAGAACAAAGCATTGGAAATGA