Ggra4288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4288.t1
Unique NameGgra4288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:99970..101718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog290400.Jann_2961
Preferred nameMA20_07595
PFAMs5_nucleotid_C,LysM,Metallophos
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00017
KEGG koko:K01081,ko:K11751
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006213,GO:0006259,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009164,GO:0009166,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019362,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0022610,GO:0031974,GO:0031981,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046135,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0051186,GO:0055086,GO:0070013,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0072524,GO:0072527,GO:0072529,GO:0090304,GO:0098609,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
Evalue6.87e-67
EggNOG OGsCOG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TTUP@28211|Alphaproteobacteria
EC3.1.3.5,3.6.1.45
DescriptionBelongs to the 5'-nucleotidase family
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4288Ggra4288Gracilaria gracilis GNS1m malegenetig00000022_pilon 99970..101718 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4288.t1.start1Ggra4288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 99970..99972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4288.t1.CDS1Ggra4288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 99970..101718 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4288.t1.exon1Ggra4288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 99970..101718 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4288.t1.stop1Ggra4288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 101716..101718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4288.t1Ggra4288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 99970..101718 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4288.t1 ID=Ggra4288.t1|Name=Ggra4288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp
MSTRCFVLLLFLSAVNAGTLRLCHTNDFHAKYLEVGDTNVKCQWWDSVKD
DCYSGIARLSTALKSLSCDVKIQAGDWVQGSLLDTVFKQDIAIEAYKWIN
YDFATFGNHEFDYGNSHINDTVRQIAPRTTFLASNVFFSGQGMDDLPLFR
FVDLHNICWVSALTKETLDLSAVEDNVSIEDEDSFMVKYINQCAQQKNVI
AITHQGYNNDIETCRDVKEIDIIIGGHSHTNLDQGQYPVKVTREDGSVCF
VTQTYAHGRYIGVLDIDFDAQGNVILEAHAYIPMDFRVKYDPVVLLKVQL
YNYQVAKKAGEVVSTATDDVMGGQLCRGPQTLPDDGSYVNSGCSMGYLVC
DALMSISTNYTSDVPRLCFMNGGSFRNSFSAGKVTLRDIVNVLPFGNTIV
SMRMKGSAIVDAINHGFSVYGTDNKGAFPGGVSNMIMKAHVDGSQPAGSM
VTIESVTIEGNTLEMDKDYIVLTNSYIASGGDGYSWPVEGTDWGTMLREA
TQTYLEKHDPYSPVTEGRVLMKGSNVASVNEANAATFVSDSSDSSQMFMD
ETVGVETELDESLVTGAQVQRKGRCNENVCAA*
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spliced messenger RNA

>Ggra4288.t1 ID=Ggra4288.t1|Name=Ggra4288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000022_pilon:99970..101718+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACCCGCTGTTTCGTCCTCCTCCTCTTTTTGTCAGCCGTCAATGC
CGGGACGCTTCGTCTCTGTCACACCAATGATTTCCACGCCAAGTATCTCG
AAGTCGGAGACACCAATGTCAAGTGTCAATGGTGGGATTCAGTGAAGGAC
GACTGCTATTCGGGCATCGCACGCCTGTCAACCGCCCTCAAATCGCTCTC
GTGCGATGTCAAGATCCAGGCTGGTGATTGGGTACAAGGATCACTTCTGG
ACACCGTGTTCAAACAAGACATCGCCATTGAGGCGTACAAGTGGATCAAT
TATGATTTTGCTACCTTCGGCAACCATGAATTTGACTACGGCAACTCCCA
CATCAACGATACTGTGCGTCAGATCGCCCCCCGAACCACGTTTCTCGCTT
CAAATGTCTTTTTCTCGGGTCAGGGAATGGATGATCTTCCTCTGTTTCGC
TTTGTTGATCTTCACAACATTTGCTGGGTGTCCGCTCTGACTAAAGAGAC
TCTGGATCTCTCAGCTGTTGAGGACAACGTTTCCATTGAGGATGAAGATT
CGTTCATGGTCAAGTACATCAACCAATGCGCGCAACAGAAGAACGTGATC
GCAATTACACACCAGGGCTACAACAACGACATTGAAACTTGTCGCGACGT
GAAGGAGATTGACATCATCATCGGTGGTCATTCGCACACAAATCTCGACC
AAGGCCAGTACCCCGTCAAGGTCACTCGTGAGGATGGTTCTGTTTGTTTC
GTCACCCAGACCTATGCCCATGGTCGCTACATCGGCGTGCTGGACATCGA
CTTTGATGCACAGGGCAACGTTATTCTCGAGGCACATGCATACATACCAA
TGGACTTCCGAGTCAAATATGATCCTGTGGTTCTTCTCAAAGTACAGCTA
TACAACTATCAAGTCGCCAAGAAGGCAGGTGAAGTTGTCTCCACTGCAAC
CGACGATGTGATGGGCGGACAGCTTTGTCGAGGTCCGCAAACGCTTCCGG
ATGACGGGTCTTATGTCAACTCCGGGTGCTCCATGGGCTACTTGGTATGT
GATGCACTGATGTCCATTTCGACAAACTACACATCCGATGTTCCTCGATT
GTGCTTCATGAACGGAGGTTCTTTTCGAAATTCTTTCAGCGCAGGAAAGG
TTACACTTCGGGATATTGTGAACGTTCTTCCGTTTGGAAACACCATTGTT
TCAATGAGAATGAAGGGATCAGCAATTGTGGATGCGATCAACCACGGTTT
CTCCGTGTATGGGACGGACAACAAAGGTGCTTTCCCGGGCGGTGTAAGCA
ACATGATAATGAAGGCTCACGTGGATGGATCACAACCAGCTGGAAGTATG
GTAACTATCGAAAGTGTTACAATTGAAGGAAATACTCTGGAAATGGATAA
GGATTACATCGTGTTGACGAATAGCTATATCGCATCAGGGGGTGATGGCT
ATTCATGGCCGGTGGAGGGTACTGACTGGGGAACCATGCTTCGAGAAGCG
ACGCAGACATATCTTGAGAAGCATGATCCGTATTCGCCAGTGACTGAGGG
AAGGGTATTGATGAAGGGGTCCAATGTGGCTTCTGTTAACGAGGCCAATG
CAGCAACGTTTGTTTCCGATAGCAGTGACTCTTCCCAGATGTTCATGGAT
GAGACTGTCGGGGTTGAAACTGAGCTGGATGAATCGCTGGTCACAGGCGC
ACAGGTGCAGAGAAAGGGCCGTTGCAACGAAAATGTGTGCGCCGCTTGA
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protein sequence of Ggra4288.t1

>Ggra4288.t1 ID=Ggra4288.t1|Name=Ggra4288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=583bp
MSTRCFVLLLFLSAVNAGTLRLCHTNDFHAKYLEVGDTNVKCQWWDSVKD
DCYSGIARLSTALKSLSCDVKIQAGDWVQGSLLDTVFKQDIAIEAYKWIN
YDFATFGNHEFDYGNSHINDTVRQIAPRTTFLASNVFFSGQGMDDLPLFR
FVDLHNICWVSALTKETLDLSAVEDNVSIEDEDSFMVKYINQCAQQKNVI
AITHQGYNNDIETCRDVKEIDIIIGGHSHTNLDQGQYPVKVTREDGSVCF
VTQTYAHGRYIGVLDIDFDAQGNVILEAHAYIPMDFRVKYDPVVLLKVQL
YNYQVAKKAGEVVSTATDDVMGGQLCRGPQTLPDDGSYVNSGCSMGYLVC
DALMSISTNYTSDVPRLCFMNGGSFRNSFSAGKVTLRDIVNVLPFGNTIV
SMRMKGSAIVDAINHGFSVYGTDNKGAFPGGVSNMIMKAHVDGSQPAGSM
VTIESVTIEGNTLEMDKDYIVLTNSYIASGGDGYSWPVEGTDWGTMLREA
TQTYLEKHDPYSPVTEGRVLMKGSNVASVNEANAATFVSDSSDSSQMFMD
ETVGVETELDESLVTGAQVQRKGRCNENVCAA*
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mRNA from alignment at tig00000022_pilon:99970..101718+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4288.t1 ID=Ggra4288.t1|Name=Ggra4288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000022_pilon:99970..101718+ (Gracilaria gracilis GNS1m male)
ATGTCAACCCGCTGTTTCGTCCTCCTCCTCTTTTTGTCAGCCGTCAATGC
CGGGACGCTTCGTCTCTGTCACACCAATGATTTCCACGCCAAGTATCTCG
AAGTCGGAGACACCAATGTCAAGTGTCAATGGTGGGATTCAGTGAAGGAC
GACTGCTATTCGGGCATCGCACGCCTGTCAACCGCCCTCAAATCGCTCTC
GTGCGATGTCAAGATCCAGGCTGGTGATTGGGTACAAGGATCACTTCTGG
ACACCGTGTTCAAACAAGACATCGCCATTGAGGCGTACAAGTGGATCAAT
TATGATTTTGCTACCTTCGGCAACCATGAATTTGACTACGGCAACTCCCA
CATCAACGATACTGTGCGTCAGATCGCCCCCCGAACCACGTTTCTCGCTT
CAAATGTCTTTTTCTCGGGTCAGGGAATGGATGATCTTCCTCTGTTTCGC
TTTGTTGATCTTCACAACATTTGCTGGGTGTCCGCTCTGACTAAAGAGAC
TCTGGATCTCTCAGCTGTTGAGGACAACGTTTCCATTGAGGATGAAGATT
CGTTCATGGTCAAGTACATCAACCAATGCGCGCAACAGAAGAACGTGATC
GCAATTACACACCAGGGCTACAACAACGACATTGAAACTTGTCGCGACGT
GAAGGAGATTGACATCATCATCGGTGGTCATTCGCACACAAATCTCGACC
AAGGCCAGTACCCCGTCAAGGTCACTCGTGAGGATGGTTCTGTTTGTTTC
GTCACCCAGACCTATGCCCATGGTCGCTACATCGGCGTGCTGGACATCGA
CTTTGATGCACAGGGCAACGTTATTCTCGAGGCACATGCATACATACCAA
TGGACTTCCGAGTCAAATATGATCCTGTGGTTCTTCTCAAAGTACAGCTA
TACAACTATCAAGTCGCCAAGAAGGCAGGTGAAGTTGTCTCCACTGCAAC
CGACGATGTGATGGGCGGACAGCTTTGTCGAGGTCCGCAAACGCTTCCGG
ATGACGGGTCTTATGTCAACTCCGGGTGCTCCATGGGCTACTTGGTATGT
GATGCACTGATGTCCATTTCGACAAACTACACATCCGATGTTCCTCGATT
GTGCTTCATGAACGGAGGTTCTTTTCGAAATTCTTTCAGCGCAGGAAAGG
TTACACTTCGGGATATTGTGAACGTTCTTCCGTTTGGAAACACCATTGTT
TCAATGAGAATGAAGGGATCAGCAATTGTGGATGCGATCAACCACGGTTT
CTCCGTGTATGGGACGGACAACAAAGGTGCTTTCCCGGGCGGTGTAAGCA
ACATGATAATGAAGGCTCACGTGGATGGATCACAACCAGCTGGAAGTATG
GTAACTATCGAAAGTGTTACAATTGAAGGAAATACTCTGGAAATGGATAA
GGATTACATCGTGTTGACGAATAGCTATATCGCATCAGGGGGTGATGGCT
ATTCATGGCCGGTGGAGGGTACTGACTGGGGAACCATGCTTCGAGAAGCG
ACGCAGACATATCTTGAGAAGCATGATCCGTATTCGCCAGTGACTGAGGG
AAGGGTATTGATGAAGGGGTCCAATGTGGCTTCTGTTAACGAGGCCAATG
CAGCAACGTTTGTTTCCGATAGCAGTGACTCTTCCCAGATGTTCATGGAT
GAGACTGTCGGGGTTGAAACTGAGCTGGATGAATCGCTGGTCACAGGCGC
ACAGGTGCAGAGAAAGGGCCGTTGCAACGAAAATGTGTGCGCCGCTTGA
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Coding sequence (CDS) from alignment at tig00000022_pilon:99970..101718+

>Ggra4288.t1 ID=Ggra4288.t1|Name=Ggra4288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00000022_pilon:99970..101718+ (Gracilaria gracilis GNS1m male)
ATGTCAACCCGCTGTTTCGTCCTCCTCCTCTTTTTGTCAGCCGTCAATGC
CGGGACGCTTCGTCTCTGTCACACCAATGATTTCCACGCCAAGTATCTCG
AAGTCGGAGACACCAATGTCAAGTGTCAATGGTGGGATTCAGTGAAGGAC
GACTGCTATTCGGGCATCGCACGCCTGTCAACCGCCCTCAAATCGCTCTC
GTGCGATGTCAAGATCCAGGCTGGTGATTGGGTACAAGGATCACTTCTGG
ACACCGTGTTCAAACAAGACATCGCCATTGAGGCGTACAAGTGGATCAAT
TATGATTTTGCTACCTTCGGCAACCATGAATTTGACTACGGCAACTCCCA
CATCAACGATACTGTGCGTCAGATCGCCCCCCGAACCACGTTTCTCGCTT
CAAATGTCTTTTTCTCGGGTCAGGGAATGGATGATCTTCCTCTGTTTCGC
TTTGTTGATCTTCACAACATTTGCTGGGTGTCCGCTCTGACTAAAGAGAC
TCTGGATCTCTCAGCTGTTGAGGACAACGTTTCCATTGAGGATGAAGATT
CGTTCATGGTCAAGTACATCAACCAATGCGCGCAACAGAAGAACGTGATC
GCAATTACACACCAGGGCTACAACAACGACATTGAAACTTGTCGCGACGT
GAAGGAGATTGACATCATCATCGGTGGTCATTCGCACACAAATCTCGACC
AAGGCCAGTACCCCGTCAAGGTCACTCGTGAGGATGGTTCTGTTTGTTTC
GTCACCCAGACCTATGCCCATGGTCGCTACATCGGCGTGCTGGACATCGA
CTTTGATGCACAGGGCAACGTTATTCTCGAGGCACATGCATACATACCAA
TGGACTTCCGAGTCAAATATGATCCTGTGGTTCTTCTCAAAGTACAGCTA
TACAACTATCAAGTCGCCAAGAAGGCAGGTGAAGTTGTCTCCACTGCAAC
CGACGATGTGATGGGCGGACAGCTTTGTCGAGGTCCGCAAACGCTTCCGG
ATGACGGGTCTTATGTCAACTCCGGGTGCTCCATGGGCTACTTGGTATGT
GATGCACTGATGTCCATTTCGACAAACTACACATCCGATGTTCCTCGATT
GTGCTTCATGAACGGAGGTTCTTTTCGAAATTCTTTCAGCGCAGGAAAGG
TTACACTTCGGGATATTGTGAACGTTCTTCCGTTTGGAAACACCATTGTT
TCAATGAGAATGAAGGGATCAGCAATTGTGGATGCGATCAACCACGGTTT
CTCCGTGTATGGGACGGACAACAAAGGTGCTTTCCCGGGCGGTGTAAGCA
ACATGATAATGAAGGCTCACGTGGATGGATCACAACCAGCTGGAAGTATG
GTAACTATCGAAAGTGTTACAATTGAAGGAAATACTCTGGAAATGGATAA
GGATTACATCGTGTTGACGAATAGCTATATCGCATCAGGGGGTGATGGCT
ATTCATGGCCGGTGGAGGGTACTGACTGGGGAACCATGCTTCGAGAAGCG
ACGCAGACATATCTTGAGAAGCATGATCCGTATTCGCCAGTGACTGAGGG
AAGGGTATTGATGAAGGGGTCCAATGTGGCTTCTGTTAACGAGGCCAATG
CAGCAACGTTTGTTTCCGATAGCAGTGACTCTTCCCAGATGTTCATGGAT
GAGACTGTCGGGGTTGAAACTGAGCTGGATGAATCGCTGGTCACAGGCGC
ACAGGTGCAGAGAAAGGGCCGTTGCAACGAAAATGTGTGCGCCGCTTGA
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