Ggra4284.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4284.t1
Unique NameGgra4284.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:86591..87412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4284Ggra4284Gracilaria gracilis GNS1m malegenetig00000022_pilon 86591..87412 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4284.t1.start1Ggra4284.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 86591..86593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4284.t1.CDS1Ggra4284.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 86591..87412 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4284.t1.exon1Ggra4284.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 86591..87412 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4284.t1.stop1Ggra4284.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 87410..87412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4284.t1Ggra4284.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 86591..87412 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4284.t1 ID=Ggra4284.t1|Name=Ggra4284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=274bp
MNDSTLLASAIVVGRSEPSEAEHAAELQRAAAALWAAVAHEEAARAASSS
RAAVAQTAAGQTAGAHDAVERAAMARRAPAWPRAADARSESARAAAAHEA
ARAAAALPLAAASATAATHEAAVRAAASSRAAAAAAAAAHTVAERAVEAR
DVVAAPAPTMAQLTASALEAGRAALLPRPAARSVAARNVAARARAAHAAA
ARAAAQHAPPSYNAPPPSPFPCPHCGRAYHSLRGVQRHVADIHDYGGLVH
CCECTFSTCNDAVLSSHRRMHRR*
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spliced messenger RNA

>Ggra4284.t1 ID=Ggra4284.t1|Name=Ggra4284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000022_pilon:86591..87412+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgaaCGACTCCACGCTTTTGGCTTCAGCTATAGTAGTCGGGCGCTCCGA
GCCGTCTGAGGCGGAGCACGCTGCTGAGTTGCAACGAGCGGCTGCAGCGC
TGTGGGCTGCTGTAGCACATGAGGAGGCGGCGCGAGCTGCGTCGTCGTCG
AGAGCAGCAGTAGCGCAAACTGCCGCCGGCCAGACTGCCGGCGCGCATGA
CGCGGTGGAGCGCGCTGCTATGGCAAGGCGCGCCCCAGCCTGGCCGCGAG
CCGCAGACGCGCGATCCGAGTCGGCGCGTGCTGCCGCGGCACATGAGGCG
GCGCGCGCTGCCGCGGCGCTACCGCTGGCAGCGGCGAGCGCGACGGCCGC
CACGCACGAGGCGGCCGTGCGCGCTGCGGCCTCGTCGCGCGCCGCAGCAG
CAGCCGCAGCCGCAGCACACACTGTGGCCGAGCGCGCCGTCGAGGCGCGC
GACGTCGTGGCGGCGCCGGCGCCCACCATGGCGCAGCTGACCGCCAGTGC
GCTCGAGGCGGGGCGCGCCGCTCTGCTGCCGCGGCCGGCGGCGCGCAGTG
TGGCGGCGCGCAATGTGGCGGCGCGCGCGCGCGCGGCGCACGCCGCGGCG
GCGCGCGCCGCGGCGCAGCACGCGCCGCCGTCGTACAATGCACCGCCGCC
AAGCCCGTTCCCGTGCCCGCACTGCGGGCGCGCGTATCACAGCCTTCGCG
GCGTGCAGAGGCATGTGGCCGACATTCACGACTACGGCGGCCTTGTGCAC
TGTTGCGAGTGCACGTTTTCAACTTGTAATGACGCCGTGCTCAGCAGTCA
CCGTCGCATGCACCGGCGTTGA
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protein sequence of Ggra4284.t1

>Ggra4284.t1 ID=Ggra4284.t1|Name=Ggra4284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MNDSTLLASAIVVGRSEPSEAEHAAELQRAAAALWAAVAHEEAARAASSS
RAAVAQTAAGQTAGAHDAVERAAMARRAPAWPRAADARSESARAAAAHEA
ARAAAALPLAAASATAATHEAAVRAAASSRAAAAAAAAAHTVAERAVEAR
DVVAAPAPTMAQLTASALEAGRAALLPRPAARSVAARNVAARARAAHAAA
ARAAAQHAPPSYNAPPPSPFPCPHCGRAYHSLRGVQRHVADIHDYGGLVH
CCECTFSTCNDAVLSSHRRMHRR*
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mRNA from alignment at tig00000022_pilon:86591..87412+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4284.t1 ID=Ggra4284.t1|Name=Ggra4284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000022_pilon:86591..87412+ (Gracilaria gracilis GNS1m male)
atgaaCGACTCCACGCTTTTGGCTTCAGCTATAGTAGTCGGGCGCTCCGA
GCCGTCTGAGGCGGAGCACGCTGCTGAGTTGCAACGAGCGGCTGCAGCGC
TGTGGGCTGCTGTAGCACATGAGGAGGCGGCGCGAGCTGCGTCGTCGTCG
AGAGCAGCAGTAGCGCAAACTGCCGCCGGCCAGACTGCCGGCGCGCATGA
CGCGGTGGAGCGCGCTGCTATGGCAAGGCGCGCCCCAGCCTGGCCGCGAG
CCGCAGACGCGCGATCCGAGTCGGCGCGTGCTGCCGCGGCACATGAGGCG
GCGCGCGCTGCCGCGGCGCTACCGCTGGCAGCGGCGAGCGCGACGGCCGC
CACGCACGAGGCGGCCGTGCGCGCTGCGGCCTCGTCGCGCGCCGCAGCAG
CAGCCGCAGCCGCAGCACACACTGTGGCCGAGCGCGCCGTCGAGGCGCGC
GACGTCGTGGCGGCGCCGGCGCCCACCATGGCGCAGCTGACCGCCAGTGC
GCTCGAGGCGGGGCGCGCCGCTCTGCTGCCGCGGCCGGCGGCGCGCAGTG
TGGCGGCGCGCAATGTGGCGGCGCGCGCGCGCGCGGCGCACGCCGCGGCG
GCGCGCGCCGCGGCGCAGCACGCGCCGCCGTCGTACAATGCACCGCCGCC
AAGCCCGTTCCCGTGCCCGCACTGCGGGCGCGCGTATCACAGCCTTCGCG
GCGTGCAGAGGCATGTGGCCGACATTCACGACTACGGCGGCCTTGTGCAC
TGTTGCGAGTGCACGTTTTCAACTTGTAATGACGCCGTGCTCAGCAGTCA
CCGTCGCATGCACCGGCGTTGA
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Coding sequence (CDS) from alignment at tig00000022_pilon:86591..87412+

>Ggra4284.t1 ID=Ggra4284.t1|Name=Ggra4284.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000022_pilon:86591..87412+ (Gracilaria gracilis GNS1m male)
atgaaCGACTCCACGCTTTTGGCTTCAGCTATAGTAGTCGGGCGCTCCGA
GCCGTCTGAGGCGGAGCACGCTGCTGAGTTGCAACGAGCGGCTGCAGCGC
TGTGGGCTGCTGTAGCACATGAGGAGGCGGCGCGAGCTGCGTCGTCGTCG
AGAGCAGCAGTAGCGCAAACTGCCGCCGGCCAGACTGCCGGCGCGCATGA
CGCGGTGGAGCGCGCTGCTATGGCAAGGCGCGCCCCAGCCTGGCCGCGAG
CCGCAGACGCGCGATCCGAGTCGGCGCGTGCTGCCGCGGCACATGAGGCG
GCGCGCGCTGCCGCGGCGCTACCGCTGGCAGCGGCGAGCGCGACGGCCGC
CACGCACGAGGCGGCCGTGCGCGCTGCGGCCTCGTCGCGCGCCGCAGCAG
CAGCCGCAGCCGCAGCACACACTGTGGCCGAGCGCGCCGTCGAGGCGCGC
GACGTCGTGGCGGCGCCGGCGCCCACCATGGCGCAGCTGACCGCCAGTGC
GCTCGAGGCGGGGCGCGCCGCTCTGCTGCCGCGGCCGGCGGCGCGCAGTG
TGGCGGCGCGCAATGTGGCGGCGCGCGCGCGCGCGGCGCACGCCGCGGCG
GCGCGCGCCGCGGCGCAGCACGCGCCGCCGTCGTACAATGCACCGCCGCC
AAGCCCGTTCCCGTGCCCGCACTGCGGGCGCGCGTATCACAGCCTTCGCG
GCGTGCAGAGGCATGTGGCCGACATTCACGACTACGGCGGCCTTGTGCAC
TGTTGCGAGTGCACGTTTTCAACTTGTAATGACGCCGTGCTCAGCAGTCA
CCGTCGCATGCACCGGCGTTGA
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