Ggra4268.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4268.t1
Unique NameGgra4268.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000944_piloncontigtig00000944_pilon:12945..14387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO45629
PFAMsBACK,BTB,Kelch_1
Max annot lvl33208|Metazoa
KEGG koko:K10457
Evalue1.66e-06
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota,38BR7@33154|Opisthokonta,3BB6C@33208|Metazoa
Descriptionprotein K33-linked ubiquitination
COG categoryT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4268Ggra4268Gracilaria gracilis GNS1m malegenetig00000944_pilon 12945..14387 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4268.t1.start1Ggra4268.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000944_pilon 12945..12947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4268.t1.CDS1Ggra4268.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000944_pilon 12945..14387 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4268.t1.exon1Ggra4268.t1.exon1Gracilaria gracilis GNS1m maleexontig00000944_pilon 12945..14387 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4268.t1.stop1Ggra4268.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000944_pilon 14385..14387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4268.t1Ggra4268.t1Gracilaria gracilis GNS1m malepolypeptidetig00000944_pilon 12945..14387 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4268.t1 ID=Ggra4268.t1|Name=Ggra4268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MVVSVLNADPVQANAQMLLEEHLHPFCDVDVVAGRKHFPAHRAVLAIHSL
DFRAAFSHPPSARSPPPTKRTFTSLSSDHPADAAAAEEGPDAKPRSKQPP
RFRIHVSLDNVDEDALRRGWQLVYSYMYGHHVTLDTDSVLAALPICRRYR
FEELASLLDAFLCEGAVTEHNCTRVYAAAAVQPSSSHAARPRDADAQLVL
NAAWQVMKSRFANVVDWRSLPYHALVKLLKLNDLDVSSEALVFDAVQQWV
FANLSTIDATHVAGVVKLVRFPTMTQEELELAAASQLVTKFTVCRKYVSR
GLAAKSDERRGLIRSVVMESSPVYRRRRTDALTFSDRIAGWRRLENNVGT
SSRYFAGCLWNLIIEKDAEWVGVFLGCQSENDEKEMDVELDFSVFMVKHT
GAHPELVTKQVKGACFGRSGQRIGFRHMIRRSDIEKEGSRLLLRDTLFIG
ASIRLRCSQLDVIGISEDGDDTAESESSMM*
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spliced messenger RNA

>Ggra4268.t1 ID=Ggra4268.t1|Name=Ggra4268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000944_pilon:12945..14387+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTGTCCGTGCTCAACGCCGACCCCGTGCAGGCCAACGCGCAGAT
GCTGTTGGAAGAGCATCTGCACCCGTTCTGTGACGTCGATGTCGTCGCCG
GACGCAAGCACTTCCCGGCCCATCGCGCAGTTCTCGCCATCCACTCGCTC
GATTTTCGCGCCGCCTTCTCGCACCCACCGTCCGCGCGCTCGCCGCCCCC
AACCAAACGAACCTTCACCTCCCTCTCGAGCGATCACCccgccgacgccg
ccgccgcGGAGGAGGGGCCCGACGCCAAGCCGCGCTCCAAGCAGCCGCCC
AGGTTCCGCATCCATGTGTCGCTGGATAACGTCGACGAAGATGCTTTGCG
TCGAGGCTGGCAGTTGGTGTACTCGTACATGTATGGCCACCATGTCACGC
TTGATACCGATTCCGTGTTGGCCGCGCTTCCGATCTGTCGACGCTACCGC
TTCGAAGAGCTGGCTTCCTTGCTAGACGCCTTCCTGTGTGAGGGCGCCGT
CACCGAGCACAACTGCACGCGTGTGTAcgccgccgccgccgtccaaccgt
cctcctcgcacgccgctcgccCGCGCGATGCCGATGCCCAACTCGTGCTC
AACGCCGCGTGGCAAGTGATGAAGTCGCGCTTTGCCAACGTCGTCGATTG
GCGTTCACTCCCGTATCATGCGCTTGTCAAGCTGCTCAAGCTCAACGACC
TCGACGTCAGCAGTGAGGCTCTCGTGTTTGACGCCGTGCAACAATGGGTG
TTTGCCAATCTCAGCACTATTGACGCCACCCATGTTGCGGGTGTTGTCAA
GCTCGTGCGCTTTCCAACCATGACGCAGGAGGAGTTGGAACTGGCTGCCG
CTTCGCAGCTCGTCACCAAGTTCACTGTGTGTAGAAAGTACGTCAGTCGA
GGGCTGGCGGCCAAATCGGATGAACGCCGCGGCTTGATACGCTCGGTTGT
GATGGAGAGCAGCCCCGTTTACCGCCGACGCCGCACAGATGCGCTCACGT
TTTCCGACCGCATCGCTGGCTGGCGCAGACTTGAGAACAACGTCGGTACT
AGCTCACGCTACTTTGCAGGCTGTCTGTGGAACCTGATCATCGAGAAAGA
TGCCGAATGGGTTGGAGTTTTCCTGGGCTGTCAGTCTGAGAATGACGAAA
AAGAGATGGACGTTGAGCTGGACTTTTCCGTGTTCATGGTCAAACATACC
GGTGCGCATCCAGAGCTTGTAACCAAACAGGTTAAGGGTGCTTGCTTTGG
TAGAAGTGGCCAACGTATTGGTTTCCGGCACATGATCAGGCGGAGCGACA
TAGAGAAGGAAGGCAGCCGATTGCTCCTAAGAGACACATTGTTCATCGGT
GCAAGCATCCGTCTTCGATGTTCACAACTTGATGTCATTGGTATATCCGA
AGATGGAGATGACACAGCCGAATCCGAGTCATCGATGATGTGA
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protein sequence of Ggra4268.t1

>Ggra4268.t1 ID=Ggra4268.t1|Name=Ggra4268.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MVVSVLNADPVQANAQMLLEEHLHPFCDVDVVAGRKHFPAHRAVLAIHSL
DFRAAFSHPPSARSPPPTKRTFTSLSSDHPADAAAAEEGPDAKPRSKQPP
RFRIHVSLDNVDEDALRRGWQLVYSYMYGHHVTLDTDSVLAALPICRRYR
FEELASLLDAFLCEGAVTEHNCTRVYAAAAVQPSSSHAARPRDADAQLVL
NAAWQVMKSRFANVVDWRSLPYHALVKLLKLNDLDVSSEALVFDAVQQWV
FANLSTIDATHVAGVVKLVRFPTMTQEELELAAASQLVTKFTVCRKYVSR
GLAAKSDERRGLIRSVVMESSPVYRRRRTDALTFSDRIAGWRRLENNVGT
SSRYFAGCLWNLIIEKDAEWVGVFLGCQSENDEKEMDVELDFSVFMVKHT
GAHPELVTKQVKGACFGRSGQRIGFRHMIRRSDIEKEGSRLLLRDTLFIG
ASIRLRCSQLDVIGISEDGDDTAESESSMM*
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mRNA from alignment at tig00000944_pilon:12945..14387+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4268.t1 ID=Ggra4268.t1|Name=Ggra4268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000944_pilon:12945..14387+ (Gracilaria gracilis GNS1m male)
ATGGTCGTGTCCGTGCTCAACGCCGACCCCGTGCAGGCCAACGCGCAGAT
GCTGTTGGAAGAGCATCTGCACCCGTTCTGTGACGTCGATGTCGTCGCCG
GACGCAAGCACTTCCCGGCCCATCGCGCAGTTCTCGCCATCCACTCGCTC
GATTTTCGCGCCGCCTTCTCGCACCCACCGTCCGCGCGCTCGCCGCCCCC
AACCAAACGAACCTTCACCTCCCTCTCGAGCGATCACCccgccgacgccg
ccgccgcGGAGGAGGGGCCCGACGCCAAGCCGCGCTCCAAGCAGCCGCCC
AGGTTCCGCATCCATGTGTCGCTGGATAACGTCGACGAAGATGCTTTGCG
TCGAGGCTGGCAGTTGGTGTACTCGTACATGTATGGCCACCATGTCACGC
TTGATACCGATTCCGTGTTGGCCGCGCTTCCGATCTGTCGACGCTACCGC
TTCGAAGAGCTGGCTTCCTTGCTAGACGCCTTCCTGTGTGAGGGCGCCGT
CACCGAGCACAACTGCACGCGTGTGTAcgccgccgccgccgtccaaccgt
cctcctcgcacgccgctcgccCGCGCGATGCCGATGCCCAACTCGTGCTC
AACGCCGCGTGGCAAGTGATGAAGTCGCGCTTTGCCAACGTCGTCGATTG
GCGTTCACTCCCGTATCATGCGCTTGTCAAGCTGCTCAAGCTCAACGACC
TCGACGTCAGCAGTGAGGCTCTCGTGTTTGACGCCGTGCAACAATGGGTG
TTTGCCAATCTCAGCACTATTGACGCCACCCATGTTGCGGGTGTTGTCAA
GCTCGTGCGCTTTCCAACCATGACGCAGGAGGAGTTGGAACTGGCTGCCG
CTTCGCAGCTCGTCACCAAGTTCACTGTGTGTAGAAAGTACGTCAGTCGA
GGGCTGGCGGCCAAATCGGATGAACGCCGCGGCTTGATACGCTCGGTTGT
GATGGAGAGCAGCCCCGTTTACCGCCGACGCCGCACAGATGCGCTCACGT
TTTCCGACCGCATCGCTGGCTGGCGCAGACTTGAGAACAACGTCGGTACT
AGCTCACGCTACTTTGCAGGCTGTCTGTGGAACCTGATCATCGAGAAAGA
TGCCGAATGGGTTGGAGTTTTCCTGGGCTGTCAGTCTGAGAATGACGAAA
AAGAGATGGACGTTGAGCTGGACTTTTCCGTGTTCATGGTCAAACATACC
GGTGCGCATCCAGAGCTTGTAACCAAACAGGTTAAGGGTGCTTGCTTTGG
TAGAAGTGGCCAACGTATTGGTTTCCGGCACATGATCAGGCGGAGCGACA
TAGAGAAGGAAGGCAGCCGATTGCTCCTAAGAGACACATTGTTCATCGGT
GCAAGCATCCGTCTTCGATGTTCACAACTTGATGTCATTGGTATATCCGA
AGATGGAGATGACACAGCCGAATCCGAGTCATCGATGATGTGA
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Coding sequence (CDS) from alignment at tig00000944_pilon:12945..14387+

>Ggra4268.t1 ID=Ggra4268.t1|Name=Ggra4268.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000944_pilon:12945..14387+ (Gracilaria gracilis GNS1m male)
ATGGTCGTGTCCGTGCTCAACGCCGACCCCGTGCAGGCCAACGCGCAGAT
GCTGTTGGAAGAGCATCTGCACCCGTTCTGTGACGTCGATGTCGTCGCCG
GACGCAAGCACTTCCCGGCCCATCGCGCAGTTCTCGCCATCCACTCGCTC
GATTTTCGCGCCGCCTTCTCGCACCCACCGTCCGCGCGCTCGCCGCCCCC
AACCAAACGAACCTTCACCTCCCTCTCGAGCGATCACCccgccgacgccg
ccgccgcGGAGGAGGGGCCCGACGCCAAGCCGCGCTCCAAGCAGCCGCCC
AGGTTCCGCATCCATGTGTCGCTGGATAACGTCGACGAAGATGCTTTGCG
TCGAGGCTGGCAGTTGGTGTACTCGTACATGTATGGCCACCATGTCACGC
TTGATACCGATTCCGTGTTGGCCGCGCTTCCGATCTGTCGACGCTACCGC
TTCGAAGAGCTGGCTTCCTTGCTAGACGCCTTCCTGTGTGAGGGCGCCGT
CACCGAGCACAACTGCACGCGTGTGTAcgccgccgccgccgtccaaccgt
cctcctcgcacgccgctcgccCGCGCGATGCCGATGCCCAACTCGTGCTC
AACGCCGCGTGGCAAGTGATGAAGTCGCGCTTTGCCAACGTCGTCGATTG
GCGTTCACTCCCGTATCATGCGCTTGTCAAGCTGCTCAAGCTCAACGACC
TCGACGTCAGCAGTGAGGCTCTCGTGTTTGACGCCGTGCAACAATGGGTG
TTTGCCAATCTCAGCACTATTGACGCCACCCATGTTGCGGGTGTTGTCAA
GCTCGTGCGCTTTCCAACCATGACGCAGGAGGAGTTGGAACTGGCTGCCG
CTTCGCAGCTCGTCACCAAGTTCACTGTGTGTAGAAAGTACGTCAGTCGA
GGGCTGGCGGCCAAATCGGATGAACGCCGCGGCTTGATACGCTCGGTTGT
GATGGAGAGCAGCCCCGTTTACCGCCGACGCCGCACAGATGCGCTCACGT
TTTCCGACCGCATCGCTGGCTGGCGCAGACTTGAGAACAACGTCGGTACT
AGCTCACGCTACTTTGCAGGCTGTCTGTGGAACCTGATCATCGAGAAAGA
TGCCGAATGGGTTGGAGTTTTCCTGGGCTGTCAGTCTGAGAATGACGAAA
AAGAGATGGACGTTGAGCTGGACTTTTCCGTGTTCATGGTCAAACATACC
GGTGCGCATCCAGAGCTTGTAACCAAACAGGTTAAGGGTGCTTGCTTTGG
TAGAAGTGGCCAACGTATTGGTTTCCGGCACATGATCAGGCGGAGCGACA
TAGAGAAGGAAGGCAGCCGATTGCTCCTAAGAGACACATTGTTCATCGGT
GCAAGCATCCGTCTTCGATGTTCACAACTTGATGTCATTGGTATATCCGA
AGATGGAGATGACACAGCCGAATCCGAGTCATCGATGATGTGA
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