Ggra4257.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4257.t1
Unique NameGgra4257.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length76
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:430600..430910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4257Ggra4257Gracilaria gracilis GNS1m malegenetig00000880_pilon 430600..430910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4257.t1Ggra4257.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 430600..430910 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4257.t1.stop1Ggra4257.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 430600..430602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4257.t1.CDS1Ggra4257.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 430600..430683 -
Ggra4257.t1.CDS2Ggra4257.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000880_pilon 430767..430910 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4257.t1.exon1Ggra4257.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 430600..430683 -
Ggra4257.t1.exon2Ggra4257.t1.exon2Gracilaria gracilis GNS1m maleexontig00000880_pilon 430767..430910 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4257.t1.intron1Ggra4257.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000880_pilon 430684..430766 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4257.t1.start1Ggra4257.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 430908..430910 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4257.t1 ID=Ggra4257.t1|Name=Ggra4257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=76bp
MNVSCSTFGYKSLTPHLAPSSSSSLTTATPTPSSLFSKQAVSCRQLNFFF
FFSTNRWAQKSSPGVRWAAAPALSG*
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spliced messenger RNA

>Ggra4257.t1 ID=Ggra4257.t1|Name=Ggra4257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp|location=Sequence derived from alignment at tig00000880_pilon:430600..430910- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTGTCCTGTTCCACATTTGGCTATAAAAGCCTCACTCCGCACCT
GGCTCCCTCCTCGTCCTCCTCTCTCACCACAGCGACGCCAACTCCCTCAT
CCCTATTCAGCAAACAGGCGGTCTCATGCCGTCAACTCAATTTCTTTTTC
TTCTTTTCAACTAACAGATGGGCGCAAAAGTCGTCTCCGGGAGTTCGATG
GGCGGCTGCTCCGGCTCTCAGCGGATAA
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protein sequence of Ggra4257.t1

>Ggra4257.t1 ID=Ggra4257.t1|Name=Ggra4257.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=76bp
MNVSCSTFGYKSLTPHLAPSSSSSLTTATPTPSSLFSKQAVSCRQLNFFF
FFSTNRWAQKSSPGVRWAAAPALSG*
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mRNA from alignment at tig00000880_pilon:430600..430910-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4257.t1 ID=Ggra4257.t1|Name=Ggra4257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp|location=Sequence derived from alignment at tig00000880_pilon:430600..430910- (Gracilaria gracilis GNS1m male)
ATGAACGTGTCCTGTTCCACATTTGGCTATAAAAGCCTCACTCCGCACCT
GGCTCCCTCCTCGTCCTCCTCTCTCACCACAGCGACGCCAACTCCCTCAT
CCCTATTCAGCAAACAGGCGGTCTCATGCCGTCAACTCAATTTCGTAAGT
CGTCCTTTGCCAGCCTTTGTACACACCATGCAATCCGCTCTCATTTACTA
ACTACCTACTCTTTATCTTTGCTGCAGTTTTTCTTCTTTTCAACTAACAG
ATGGGCGCAAAAGTCGTCTCCGGGAGTTCGATGGGCGGCTGCTCCGGCTC
TCAGCGGATAA
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Coding sequence (CDS) from alignment at tig00000880_pilon:430600..430910-

>Ggra4257.t1 ID=Ggra4257.t1|Name=Ggra4257.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=228bp|location=Sequence derived from alignment at tig00000880_pilon:430600..430910- (Gracilaria gracilis GNS1m male)
ATGAACGTGTCCTGTTCCACATTTGGCTATAAAAGCCTCACTCCGCACCT
GGCTCCCTCCTCGTCCTCCTCTCTCACCACAGCGACGCCAACTCCCTCAT
CCCTATTCAGCAAACAGGCGGTCTCATGCCGTCAACTCAATTTCTTTTTC
TTCTTTTCAACTAACAGATGGGCGCAAAAGTCGTCTCCGGGAGTTCGATG
GGCGGCTGCTCCGGCTCTCAGCGGATAA
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