Ggra4254.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4254.t1
Unique NameGgra4254.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:419040..419393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4254Ggra4254Gracilaria gracilis GNS1m malegenetig00000880_pilon 419040..419393 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4254.t1.start1Ggra4254.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 419040..419042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4254.t1.CDS1Ggra4254.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 419040..419393 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4254.t1.exon1Ggra4254.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 419040..419393 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4254.t1.stop1Ggra4254.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 419391..419393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4254.t1Ggra4254.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 419040..419393 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4254.t1 ID=Ggra4254.t1|Name=Ggra4254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MPTTPQRSGHLALVLQSLETTSNDESITIHDGVQTSEVPDPHAFAEDALS
RVPDCPTAEATDLEFPTPQEASHALSQRPQSRTTQSTAANIKPPTTACTQ
EILSAACKRIGFSGSGT*
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spliced messenger RNA

>Ggra4254.t1 ID=Ggra4254.t1|Name=Ggra4254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000880_pilon:419040..419393+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACCACTCCACAGCGCTCTGGCCATCTCGCTCTTGTGCTCCAGAG
TCTAGAGACTACTTCAAATGATGAGAGTATTACGATTCATGACGGAGTCC
AAACATCAGAAGTCCCCGATCCACATGCATTCGCTGAAGATGCTTTGTCG
CGAGTGCCAGATTGTCCCACAGCAGAGGCTACTGATTTAGAATTTCCAAC
TCCGCAAGAAGCTAGCCACGCTCTATCACAAAGACCGCAATCTAGGACGA
CCCAGTCAACTGCAGCTAATATCAAGCCACCAACTACAGCCTGCACGCAG
GAAATACTGTCTGCTGCTTGCAAGAGAATAGGATTTTCTGGTTCTGGGAC
GTAG
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protein sequence of Ggra4254.t1

>Ggra4254.t1 ID=Ggra4254.t1|Name=Ggra4254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MPTTPQRSGHLALVLQSLETTSNDESITIHDGVQTSEVPDPHAFAEDALS
RVPDCPTAEATDLEFPTPQEASHALSQRPQSRTTQSTAANIKPPTTACTQ
EILSAACKRIGFSGSGT*
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mRNA from alignment at tig00000880_pilon:419040..419393+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4254.t1 ID=Ggra4254.t1|Name=Ggra4254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000880_pilon:419040..419393+ (Gracilaria gracilis GNS1m male)
ATGCCTACCACTCCACAGCGCTCTGGCCATCTCGCTCTTGTGCTCCAGAG
TCTAGAGACTACTTCAAATGATGAGAGTATTACGATTCATGACGGAGTCC
AAACATCAGAAGTCCCCGATCCACATGCATTCGCTGAAGATGCTTTGTCG
CGAGTGCCAGATTGTCCCACAGCAGAGGCTACTGATTTAGAATTTCCAAC
TCCGCAAGAAGCTAGCCACGCTCTATCACAAAGACCGCAATCTAGGACGA
CCCAGTCAACTGCAGCTAATATCAAGCCACCAACTACAGCCTGCACGCAG
GAAATACTGTCTGCTGCTTGCAAGAGAATAGGATTTTCTGGTTCTGGGAC
GTAG
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Coding sequence (CDS) from alignment at tig00000880_pilon:419040..419393+

>Ggra4254.t1 ID=Ggra4254.t1|Name=Ggra4254.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000880_pilon:419040..419393+ (Gracilaria gracilis GNS1m male)
ATGCCTACCACTCCACAGCGCTCTGGCCATCTCGCTCTTGTGCTCCAGAG
TCTAGAGACTACTTCAAATGATGAGAGTATTACGATTCATGACGGAGTCC
AAACATCAGAAGTCCCCGATCCACATGCATTCGCTGAAGATGCTTTGTCG
CGAGTGCCAGATTGTCCCACAGCAGAGGCTACTGATTTAGAATTTCCAAC
TCCGCAAGAAGCTAGCCACGCTCTATCACAAAGACCGCAATCTAGGACGA
CCCAGTCAACTGCAGCTAATATCAAGCCACCAACTACAGCCTGCACGCAG
GAAATACTGTCTGCTGCTTGCAAGAGAATAGGATTTTCTGGTTCTGGGAC
GTAG
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