Ggra4253.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4253.t1
Unique NameGgra4253.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:411630..412305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5127.CCT63469
PFAMsDehydratase_hem
Max annot lvl4751|Fungi
Evalue1.7e-12
EggNOG OGs2EBI2@1|root,2SHKM@2759|Eukaryota,39Z2C@33154|Opisthokonta,3NW8W@4751|Fungi,3QMSS@4890|Ascomycota,2189E@147550|Sordariomycetes,3TK8I@5125|Hypocreales,1FU9E@110618|Nectriaceae
DescriptionHaem-containing dehydratase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4253Ggra4253Gracilaria gracilis GNS1m malegenetig00000880_pilon 411630..412305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4253.t1Ggra4253.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 411630..412305 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4253.t1.stop1Ggra4253.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 411630..411632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4253.t1.CDS1Ggra4253.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 411630..411987 -
Ggra4253.t1.CDS2Ggra4253.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000880_pilon 412079..412305 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4253.t1.exon1Ggra4253.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 411630..411987 -
Ggra4253.t1.exon2Ggra4253.t1.exon2Gracilaria gracilis GNS1m maleexontig00000880_pilon 412079..412305 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4253.t1.intron1Ggra4253.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000880_pilon 411988..412078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4253.t1.start1Ggra4253.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 412303..412305 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4253.t1 ID=Ggra4253.t1|Name=Ggra4253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MASSSTVLVSRIPPHLRKKRIVSNELPDNHKPTTPSYFASFATNVTKLPS
FYFVQTKEVSNRDLADASEKIIFGDNMNAFEKWHKDRTDDWWYCDLDING
DIGAFRERYCPSVEAIETSFSQNSPKPVSLLAERMRDIVEHGFNGSARVR
IPRGETEVLKPLGAPHFTNKIHGTTLGKRFSIASHENDVLLHSE*
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spliced messenger RNA

>Ggra4253.t1 ID=Ggra4253.t1|Name=Ggra4253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000880_pilon:411630..412305- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTTCAAGCACGGTTCTTGTCTCACGAATTCCGCCCCATCTTAG
GAAGAAACGCATTGTCTCGAATGAATTACCTGACAACCACAAACCAACCA
CACCATCGTATTTCGCTTCCTTTGCAACCAATGTAACGAAGTTACCATCG
TTCTATTTTGTTCAAACAAAAGAGGTTTCTAATCGCGACTTGGCAGATGC
AAGTGAGAAGATTATTTTTGGCGACAACATGAATGCATTCGAGAAATGGC
ACAAAGATCGTACCGATGATTGGTGGTACTGTGATCTGGACATCAATGGG
GACATAGGTGCTTTCAGAGAAAGGTATTGTCCCAGCGTTGAAGCTATCGA
AACCTCATTCTCTCAGAATTCTCCCAAGCCAGTATCTCTGCTAGCTGAAA
GGATGAGAGATATTGTAGAACATGGGTTTAATGGAAGCGCGCGTGTGCGT
ATTCCGAGAGGAGAAACCGAAGTCCTTAAGCCGCTTGGGGCACCTCATTT
CACGAATAAAATTCACGGCACCACTCTGGGAAAACGTTTTAGCATTGCGT
CGCATGAGAACGATGTTTTGCTACATTCAGAGTAA
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protein sequence of Ggra4253.t1

>Ggra4253.t1 ID=Ggra4253.t1|Name=Ggra4253.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MASSSTVLVSRIPPHLRKKRIVSNELPDNHKPTTPSYFASFATNVTKLPS
FYFVQTKEVSNRDLADASEKIIFGDNMNAFEKWHKDRTDDWWYCDLDING
DIGAFRERYCPSVEAIETSFSQNSPKPVSLLAERMRDIVEHGFNGSARVR
IPRGETEVLKPLGAPHFTNKIHGTTLGKRFSIASHENDVLLHSE*
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mRNA from alignment at tig00000880_pilon:411630..412305-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4253.t1 ID=Ggra4253.t1|Name=Ggra4253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=676bp|location=Sequence derived from alignment at tig00000880_pilon:411630..412305- (Gracilaria gracilis GNS1m male)
ATGGCGTCTTCAAGCACGGTTCTTGTCTCACGAATTCCGCCCCATCTTAG
GAAGAAACGCATTGTCTCGAATGAATTACCTGACAACCACAAACCAACCA
CACCATCGTATTTCGCTTCCTTTGCAACCAATGTAACGAAGTTACCATCG
TTCTATTTTGTTCAAACAAAAGAGGTTTCTAATCGCGACTTGGCAGATGC
AAGTGAGAAGATTATTTTTGGCGACAAGTAAGCCTTCTGGGCCAAAAGTT
ACCGAGATAGCCTTATTTAGCGACCCCCAAGGCTACGCCAACAAGATCAT
CGCTTGCTTCTGGAACAGCATGAATGCATTCGAGAAATGGCACAAAGATC
GTACCGATGATTGGTGGTACTGTGATCTGGACATCAATGGGGACATAGGT
GCTTTCAGAGAAAGGTATTGTCCCAGCGTTGAAGCTATCGAAACCTCATT
CTCTCAGAATTCTCCCAAGCCAGTATCTCTGCTAGCTGAAAGGATGAGAG
ATATTGTAGAACATGGGTTTAATGGAAGCGCGCGTGTGCGTATTCCGAGA
GGAGAAACCGAAGTCCTTAAGCCGCTTGGGGCACCTCATTTCACGAATAA
AATTCACGGCACCACTCTGGGAAAACGTTTTAGCATTGCGTCGCATGAGA
ACGATGTTTTGCTACATTCAGAGTAA
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Coding sequence (CDS) from alignment at tig00000880_pilon:411630..412305-

>Ggra4253.t1 ID=Ggra4253.t1|Name=Ggra4253.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000880_pilon:411630..412305- (Gracilaria gracilis GNS1m male)
ATGGCGTCTTCAAGCACGGTTCTTGTCTCACGAATTCCGCCCCATCTTAG
GAAGAAACGCATTGTCTCGAATGAATTACCTGACAACCACAAACCAACCA
CACCATCGTATTTCGCTTCCTTTGCAACCAATGTAACGAAGTTACCATCG
TTCTATTTTGTTCAAACAAAAGAGGTTTCTAATCGCGACTTGGCAGATGC
AAGTGAGAAGATTATTTTTGGCGACAACATGAATGCATTCGAGAAATGGC
ACAAAGATCGTACCGATGATTGGTGGTACTGTGATCTGGACATCAATGGG
GACATAGGTGCTTTCAGAGAAAGGTATTGTCCCAGCGTTGAAGCTATCGA
AACCTCATTCTCTCAGAATTCTCCCAAGCCAGTATCTCTGCTAGCTGAAA
GGATGAGAGATATTGTAGAACATGGGTTTAATGGAAGCGCGCGTGTGCGT
ATTCCGAGAGGAGAAACCGAAGTCCTTAAGCCGCTTGGGGCACCTCATTT
CACGAATAAAATTCACGGCACCACTCTGGGAAAACGTTTTAGCATTGCGT
CGCATGAGAACGATGTTTTGCTACATTCAGAGTAA
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