Ggra4248.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4248.t1
Unique NameGgra4248.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:343065..344206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707295.1
Preferred nameTK
PFAMsTransket_pyr,Transketolase_C,Transketolase_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K01662
KEGG ReactionR01067,R01641,R01830,R05636,R06590
KEGG Pathwayko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00096,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0016020,GO:0016740,GO:0016744,GO:0030145,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055035
Evalue3.99e-80
EggNOG OGsCOG0021@1|root,KOG0523@2759|Eukaryota
EC2.2.1.1,2.2.1.7
Descriptiontransketolase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4248Ggra4248Gracilaria gracilis GNS1m malegenetig00000880_pilon 343065..344206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4248.t1Ggra4248.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 343065..344206 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4248.t1.start1Ggra4248.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 343065..343067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4248.t1.CDS1Ggra4248.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 343065..343237 +
Ggra4248.t1.CDS2Ggra4248.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000880_pilon 343376..343818 +
Ggra4248.t1.CDS3Ggra4248.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000880_pilon 343869..344206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4248.t1.exon1Ggra4248.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 343065..343237 +
Ggra4248.t1.exon2Ggra4248.t1.exon2Gracilaria gracilis GNS1m maleexontig00000880_pilon 343376..343818 +
Ggra4248.t1.exon3Ggra4248.t1.exon3Gracilaria gracilis GNS1m maleexontig00000880_pilon 343869..344206 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4248.t1.intron1Ggra4248.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000880_pilon 343238..343375 +
Ggra4248.t1.intron2Ggra4248.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000880_pilon 343819..343868 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4248.t1.stop1Ggra4248.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 344204..344206 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4248.t1 ID=Ggra4248.t1|Name=Ggra4248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MDHYREKVADGAACEAAWNDTFAAYKAKYPELAAQFEKFVINKERPPEVE
QALSSRLWALATSRRLRRRVATLALVCVNTAIPNGISLAGYGLRPYTATF
FVFTDYARGAMRLSSLARTGVINVITHDSVFLGEDGPTHQPIEHLASFRA
MPNHYMYRWYRPADPMETAAAYSIALQSTKTPTTMAYTRQKTCILEGGSF
EGAKKDMILIGTGSETELAQEAAKQLRESGKTVRVVSAPCVDIFEEQSES
YKDSVPSAIVSKSKRLVVEAATSYGWSKYAENFVCIDGFGISAPGKDDMK
KHFGMTVENVVEKAKAM*
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spliced messenger RNA

>Ggra4248.t1 ID=Ggra4248.t1|Name=Ggra4248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000880_pilon:343065..344206+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCACTACCGTGAGAAGGTGGCTGACGGTGCCGCCTGCGAAGCGGC
GTGGAACGACACCTTTGCCGCGTACAAGGCCAAATATCCGGAACTGGCCG
CCCAATTCGAGAAGTTCGTCATCAACAAAGAGCGGCCGCCTGAGGTCGAG
CAGGCTCTGTCGAGCAGGCTCTGGGCTTTGGCGACTTCCAGAAGGCTACG
CCGGAGGGTCGCAACCCTCGCTTTGGTGTGCGTGAACACGGCCATTCCCA
ACGGTATCTCGCTGGCTGGCTATGGGCTCAGGCCGTACACTGCTACCTTC
TTCGTATTTACTGATTACGCTCGTGGTGCCATGCGTCTGTCGTCGCTTGC
ACGTACCGGTGTGATCAATGTGATCACTCATGACTCTGTGTTCCTTGGAG
AGGATGGTCCTACACATCAGCCCATCGAGCATTTGGCTTCGTTCAGAGCC
ATGCCCAACCACTACATGTACCGTTGGTACCGACCGGCTGACCCGATGGA
GACGGCTGCGGCGTACTCTATTGCTCTGCAGAGCACCAAGACGCCCACTA
CCATGGCGTACACGCGACAGAAGACTTGCATTCTGGAGGGTGGCTCTTTC
GAGGGCGCCAAGAAGGACATGATTCTGATTGGAACTGGGTCTGAGACTGA
GCTGGCACAAGAGGCAGCCAAGCAATTGAGAGAGAGTGGAAAGACTGTGC
GCGTTGTTTCTGCGCCTTGCGTGGATATCTTTGAGGAACAGAGTGAGTCG
TACAAGGACAGCGTTCCGTCAGCGATTGTGTCCAAGTCGAAGAGACTGGT
AGTGGAGGCTGCTACGAGCTATGGATGGTCAAAGTACGCAGAAAACTTTG
TGTGCATTGATGGATTCGGTATCTCGGCACCCGGAAAGGATGACATGAAG
AAACACTTTGGTATGACTGTTGAGAACGTTGTGGAGAAGGCAAAGGCTAT
GTAG
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protein sequence of Ggra4248.t1

>Ggra4248.t1 ID=Ggra4248.t1|Name=Ggra4248.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MDHYREKVADGAACEAAWNDTFAAYKAKYPELAAQFEKFVINKERPPEVE
QALSSRLWALATSRRLRRRVATLALVCVNTAIPNGISLAGYGLRPYTATF
FVFTDYARGAMRLSSLARTGVINVITHDSVFLGEDGPTHQPIEHLASFRA
MPNHYMYRWYRPADPMETAAAYSIALQSTKTPTTMAYTRQKTCILEGGSF
EGAKKDMILIGTGSETELAQEAAKQLRESGKTVRVVSAPCVDIFEEQSES
YKDSVPSAIVSKSKRLVVEAATSYGWSKYAENFVCIDGFGISAPGKDDMK
KHFGMTVENVVEKAKAM*
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mRNA from alignment at tig00000880_pilon:343065..344206+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4248.t1 ID=Ggra4248.t1|Name=Ggra4248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1142bp|location=Sequence derived from alignment at tig00000880_pilon:343065..344206+ (Gracilaria gracilis GNS1m male)
ATGGATCACTACCGTGAGAAGGTGGCTGACGGTGCCGCCTGCGAAGCGGC
GTGGAACGACACCTTTGCCGCGTACAAGGCCAAATATCCGGAACTGGCCG
CCCAATTCGAGAAGTTCGTCATCAACAAAGAGCGGCCGCCTGAGGTCGAG
CAGGCTCTGTCGAGCAGGCTCTGGTCGATGTCGCCATGGAGACACCTGCG
GAGCCCACTCGTCAGCTCTCGCAGATTATGCTCAACACTATTGCGCCGAT
TTACCCTCCGTTCATCGGTGGATCGGCTGATCTTGCTGGCTCTAATCTCA
CCATCATGAAGGGCTTTGGCGACTTCCAGAAGGCTACGCCGGAGGGTCGC
AACCCTCGCTTTGGTGTGCGTGAACACGGCCATTCCCAACGGTATCTCGC
TGGCTGGCTATGGGCTCAGGCCGTACACTGCTACCTTCTTCGTATTTACT
GATTACGCTCGTGGTGCCATGCGTCTGTCGTCGCTTGCACGTACCGGTGT
GATCAATGTGATCACTCATGACTCTGTGTTCCTTGGAGAGGATGGTCCTA
CACATCAGCCCATCGAGCATTTGGCTTCGTTCAGAGCCATGCCCAACCAC
TACATGTACCGTTGGTACCGACCGGCTGACCCGATGGAGACGGCTGCGGC
GTACTCTATTGCTCTGCAGAGCACCAAGACGCCCACTACCATGGCGTACA
CGCGACAGAAGACTTGCATTCTGGAGGGTGGCTCTTTCGAGGGCGCCAAG
AAGGGTATGTACGTATGTACGTTCTGAGCGATGACTCGGACAACGGTATC
CCAGACATGATTCTGATTGGAACTGGGTCTGAGACTGAGCTGGCACAAGA
GGCAGCCAAGCAATTGAGAGAGAGTGGAAAGACTGTGCGCGTTGTTTCTG
CGCCTTGCGTGGATATCTTTGAGGAACAGAGTGAGTCGTACAAGGACAGC
GTTCCGTCAGCGATTGTGTCCAAGTCGAAGAGACTGGTAGTGGAGGCTGC
TACGAGCTATGGATGGTCAAAGTACGCAGAAAACTTTGTGTGCATTGATG
GATTCGGTATCTCGGCACCCGGAAAGGATGACATGAAGAAACACTTTGGT
ATGACTGTTGAGAACGTTGTGGAGAAGGCAAAGGCTATGTAG
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Coding sequence (CDS) from alignment at tig00000880_pilon:343065..344206+

>Ggra4248.t1 ID=Ggra4248.t1|Name=Ggra4248.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000880_pilon:343065..344206+ (Gracilaria gracilis GNS1m male)
ATGGATCACTACCGTGAGAAGGTGGCTGACGGTGCCGCCTGCGAAGCGGC
GTGGAACGACACCTTTGCCGCGTACAAGGCCAAATATCCGGAACTGGCCG
CCCAATTCGAGAAGTTCGTCATCAACAAAGAGCGGCCGCCTGAGGTCGAG
CAGGCTCTGTCGAGCAGGCTCTGGGCTTTGGCGACTTCCAGAAGGCTACG
CCGGAGGGTCGCAACCCTCGCTTTGGTGTGCGTGAACACGGCCATTCCCA
ACGGTATCTCGCTGGCTGGCTATGGGCTCAGGCCGTACACTGCTACCTTC
TTCGTATTTACTGATTACGCTCGTGGTGCCATGCGTCTGTCGTCGCTTGC
ACGTACCGGTGTGATCAATGTGATCACTCATGACTCTGTGTTCCTTGGAG
AGGATGGTCCTACACATCAGCCCATCGAGCATTTGGCTTCGTTCAGAGCC
ATGCCCAACCACTACATGTACCGTTGGTACCGACCGGCTGACCCGATGGA
GACGGCTGCGGCGTACTCTATTGCTCTGCAGAGCACCAAGACGCCCACTA
CCATGGCGTACACGCGACAGAAGACTTGCATTCTGGAGGGTGGCTCTTTC
GAGGGCGCCAAGAAGGACATGATTCTGATTGGAACTGGGTCTGAGACTGA
GCTGGCACAAGAGGCAGCCAAGCAATTGAGAGAGAGTGGAAAGACTGTGC
GCGTTGTTTCTGCGCCTTGCGTGGATATCTTTGAGGAACAGAGTGAGTCG
TACAAGGACAGCGTTCCGTCAGCGATTGTGTCCAAGTCGAAGAGACTGGT
AGTGGAGGCTGCTACGAGCTATGGATGGTCAAAGTACGCAGAAAACTTTG
TGTGCATTGATGGATTCGGTATCTCGGCACCCGGAAAGGATGACATGAAG
AAACACTTTGGTATGACTGTTGAGAACGTTGTGGAGAAGGCAAAGGCTAT
GTAG
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