Ggra4234.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4234.t1
Unique NameGgra4234.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:313697..314734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH114CT
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
Evalue4.51e-47
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
DescriptionFK506 binding
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4234Ggra4234Gracilaria gracilis GNS1m malegenetig00000880_pilon 313697..314734 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4234.t1.stop1Ggra4234.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 313697..313699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4234.t1.CDS1Ggra4234.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 313697..314734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4234.t1.exon1Ggra4234.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 313697..314734 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4234.t1.start1Ggra4234.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 314732..314734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4234.t1Ggra4234.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 313697..314734 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4234.t1 ID=Ggra4234.t1|Name=Ggra4234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MAAGPTAPSKQRKSLSSNKPSKSPGDAKQQPESSASTKTTEKKVTRALGT
RRETKPSKVDTKKTREDFIAEGIVDDIDDSAGQFETADIRFGIDDVQDPF
KIDQAQIVKQDAEEEAEKIRKAVGQSLDVTGDGGVAKVVVRQGRGEVAET
GATVKVQYQGKLEDGSVFDDSSSRGAFEFVLGSGTVIKGWEAGVATMRKG
EIAQFTIQPNYAYGRRGMPPVIPSNAVLTFEIELISVAGGKEESIKKVSD
FNPDVARTPADIAREYEAKIEKQAERKKNMTLLDRFYIISPFASQSGEKP
PWWINPNITFFLIAGMVAVGFYFVWISGAIHIGYVDHPVDVNIFK*
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spliced messenger RNA

>Ggra4234.t1 ID=Ggra4234.t1|Name=Ggra4234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000880_pilon:313697..314734- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGGTCCAACCGCGCCGTCAAAGCAGCGAAAGTCATTGAGCTC
AAACAAGCCGTCCAAATCCCCTGGCGATGCGAAGCAGCAGCCTGAATCAT
CCGCGAGTACTAAGACCACTGAGAAGAAAGTAACTCGTGCCCTTGGAACA
CGCCGAGAGACAAAGCCATCCAAAGTAGACACGAAGAAGACGAGGGAAGA
CTTCATCGCAGAGGGTATCGTCGATGACATCGATGATAGTGCTGGACAGT
TTGAGACTGCAGATATCCGATTTGGTATAGATGACGTGCAAGACCCATTC
AAGATTGACCAAGCACAAATTGTGAAGCAGGACGCTGAGGAGGAGGCCGA
AAAGATACGAAAAGCTGTCGGTCAATCTTTGGATGTTACTGGCGATGGTG
GTGTAGCCAAAGTTGTCGTTCGTCAAGGCAGAGGGGAAGTCGCTGAGACA
GGCGCTACCGTCAAAGTCCAGTACCAAGGGAAGCTGGAAGACGGGTCTGT
TTTTGATGATAGCTCCTCTCGTGGAGCTTTCGAGTTTGTGCTCGGGAGCG
GTACAGTCATTAAAGGTTGGGAAGCTGGAGTTGCGACGATGCGAAAAGGA
GAAATTGCTCAGTTCACCATTCAACCAAACTATGCGTATGGCCGCAGAGG
TATGCCACCTGTTATTCCGAGCAATGCCGTATTGACATTTGAGATTGAAT
TGATCTCTGTTGCAGGAGGGAAAGAGGAATCAATCAAGAAAGTGTCAGAC
TTTAACCCGGATGTTGCTCGAACCCCGGCGGATATTGCAAGGGAGTACGA
AGCCAAAATTGAAAAGCAGGCAGAACGAAAGAAGAACATGACACTTCTAG
ATCGCTTTTACATCATCAGTCCGTTTGCAAGCCAGAGCGGAGAGAAGCCA
CCGTGGTGGATCAATCCTAACATAACATTTTTTCTCATTGCTGGAATGGT
CGCGGTTGGCTTTTACTTTGTGTGGATTTCAGGAGCAATCCATATCGGAT
ATGTTGACCACCCTGTAGATGTGAACATATTCAAATAG
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protein sequence of Ggra4234.t1

>Ggra4234.t1 ID=Ggra4234.t1|Name=Ggra4234.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MAAGPTAPSKQRKSLSSNKPSKSPGDAKQQPESSASTKTTEKKVTRALGT
RRETKPSKVDTKKTREDFIAEGIVDDIDDSAGQFETADIRFGIDDVQDPF
KIDQAQIVKQDAEEEAEKIRKAVGQSLDVTGDGGVAKVVVRQGRGEVAET
GATVKVQYQGKLEDGSVFDDSSSRGAFEFVLGSGTVIKGWEAGVATMRKG
EIAQFTIQPNYAYGRRGMPPVIPSNAVLTFEIELISVAGGKEESIKKVSD
FNPDVARTPADIAREYEAKIEKQAERKKNMTLLDRFYIISPFASQSGEKP
PWWINPNITFFLIAGMVAVGFYFVWISGAIHIGYVDHPVDVNIFK*
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mRNA from alignment at tig00000880_pilon:313697..314734-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4234.t1 ID=Ggra4234.t1|Name=Ggra4234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000880_pilon:313697..314734- (Gracilaria gracilis GNS1m male)
ATGGCTGCCGGTCCAACCGCGCCGTCAAAGCAGCGAAAGTCATTGAGCTC
AAACAAGCCGTCCAAATCCCCTGGCGATGCGAAGCAGCAGCCTGAATCAT
CCGCGAGTACTAAGACCACTGAGAAGAAAGTAACTCGTGCCCTTGGAACA
CGCCGAGAGACAAAGCCATCCAAAGTAGACACGAAGAAGACGAGGGAAGA
CTTCATCGCAGAGGGTATCGTCGATGACATCGATGATAGTGCTGGACAGT
TTGAGACTGCAGATATCCGATTTGGTATAGATGACGTGCAAGACCCATTC
AAGATTGACCAAGCACAAATTGTGAAGCAGGACGCTGAGGAGGAGGCCGA
AAAGATACGAAAAGCTGTCGGTCAATCTTTGGATGTTACTGGCGATGGTG
GTGTAGCCAAAGTTGTCGTTCGTCAAGGCAGAGGGGAAGTCGCTGAGACA
GGCGCTACCGTCAAAGTCCAGTACCAAGGGAAGCTGGAAGACGGGTCTGT
TTTTGATGATAGCTCCTCTCGTGGAGCTTTCGAGTTTGTGCTCGGGAGCG
GTACAGTCATTAAAGGTTGGGAAGCTGGAGTTGCGACGATGCGAAAAGGA
GAAATTGCTCAGTTCACCATTCAACCAAACTATGCGTATGGCCGCAGAGG
TATGCCACCTGTTATTCCGAGCAATGCCGTATTGACATTTGAGATTGAAT
TGATCTCTGTTGCAGGAGGGAAAGAGGAATCAATCAAGAAAGTGTCAGAC
TTTAACCCGGATGTTGCTCGAACCCCGGCGGATATTGCAAGGGAGTACGA
AGCCAAAATTGAAAAGCAGGCAGAACGAAAGAAGAACATGACACTTCTAG
ATCGCTTTTACATCATCAGTCCGTTTGCAAGCCAGAGCGGAGAGAAGCCA
CCGTGGTGGATCAATCCTAACATAACATTTTTTCTCATTGCTGGAATGGT
CGCGGTTGGCTTTTACTTTGTGTGGATTTCAGGAGCAATCCATATCGGAT
ATGTTGACCACCCTGTAGATGTGAACATATTCAAATAG
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Coding sequence (CDS) from alignment at tig00000880_pilon:313697..314734-

>Ggra4234.t1 ID=Ggra4234.t1|Name=Ggra4234.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000880_pilon:313697..314734- (Gracilaria gracilis GNS1m male)
ATGGCTGCCGGTCCAACCGCGCCGTCAAAGCAGCGAAAGTCATTGAGCTC
AAACAAGCCGTCCAAATCCCCTGGCGATGCGAAGCAGCAGCCTGAATCAT
CCGCGAGTACTAAGACCACTGAGAAGAAAGTAACTCGTGCCCTTGGAACA
CGCCGAGAGACAAAGCCATCCAAAGTAGACACGAAGAAGACGAGGGAAGA
CTTCATCGCAGAGGGTATCGTCGATGACATCGATGATAGTGCTGGACAGT
TTGAGACTGCAGATATCCGATTTGGTATAGATGACGTGCAAGACCCATTC
AAGATTGACCAAGCACAAATTGTGAAGCAGGACGCTGAGGAGGAGGCCGA
AAAGATACGAAAAGCTGTCGGTCAATCTTTGGATGTTACTGGCGATGGTG
GTGTAGCCAAAGTTGTCGTTCGTCAAGGCAGAGGGGAAGTCGCTGAGACA
GGCGCTACCGTCAAAGTCCAGTACCAAGGGAAGCTGGAAGACGGGTCTGT
TTTTGATGATAGCTCCTCTCGTGGAGCTTTCGAGTTTGTGCTCGGGAGCG
GTACAGTCATTAAAGGTTGGGAAGCTGGAGTTGCGACGATGCGAAAAGGA
GAAATTGCTCAGTTCACCATTCAACCAAACTATGCGTATGGCCGCAGAGG
TATGCCACCTGTTATTCCGAGCAATGCCGTATTGACATTTGAGATTGAAT
TGATCTCTGTTGCAGGAGGGAAAGAGGAATCAATCAAGAAAGTGTCAGAC
TTTAACCCGGATGTTGCTCGAACCCCGGCGGATATTGCAAGGGAGTACGA
AGCCAAAATTGAAAAGCAGGCAGAACGAAAGAAGAACATGACACTTCTAG
ATCGCTTTTACATCATCAGTCCGTTTGCAAGCCAGAGCGGAGAGAAGCCA
CCGTGGTGGATCAATCCTAACATAACATTTTTTCTCATTGCTGGAATGGT
CGCGGTTGGCTTTTACTTTGTGTGGATTTCAGGAGCAATCCATATCGGAT
ATGTTGACCACCCTGTAGATGTGAACATATTCAAATAG
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