Ggra4231.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4231.t1
Unique Name	Ggra4231.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	444

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000880_pilon	contig	tig00000880_pilon:305674..309115 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4231	Ggra4231	Gracilaria gracilis GNS1m male	gene	tig00000880_pilon 305674..309115 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4231.t1	Ggra4231.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000880_pilon 305674..309115 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4231.t1.start1	Ggra4231.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000880_pilon 305674..305676 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4231.t1.CDS1	Ggra4231.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000880_pilon 305674..306879 +
Ggra4231.t1.CDS2	Ggra4231.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000880_pilon 308897..308958 +
Ggra4231.t1.CDS3	Ggra4231.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000880_pilon 309052..309115 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4231.t1.exon1	Ggra4231.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000880_pilon 305674..306879 +
Ggra4231.t1.exon2	Ggra4231.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000880_pilon 308897..308958 +
Ggra4231.t1.exon3	Ggra4231.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000880_pilon 309052..309115 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4231.t1.intron1	Ggra4231.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000880_pilon 306880..308896 +
Ggra4231.t1.intron2	Ggra4231.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000880_pilon 308959..309051 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4231.t1.stop1	Ggra4231.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000880_pilon 309113..309115 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000880_pilon:305674..309115+
coding sequence from alignment at tig00000880_pilon:305674..309115+

mRNA sequence

>Ggra4231.t1 ID=Ggra4231.t1|Name=Ggra4231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MLARAVLSYLRLLLRPSQSNLYEIIIFSSTEDDVESGRRCHARCILFPNQ
DHQELQRFSAVSLGTEGTIHLLAFDAHNLFCILPRRKSITWNLRRRSSMR
DGARRDGSFVAGTPVVLPQELVQGYPDFENHMRANNELMFELESDGVKEF
KKRYKISKGGLCVADWKLSEEHEVVTNDKWNLYASHELFPYLKAATNGGH
FVLRNDCEATIIRPLKPFPDLYARVARLKAIENYCLQTEHGVLVAAPWRL
LISLLWFLLSLCVGVAAAVHNRNDWFESMESFFTATTIVAITLPAIVSLL
VQEPELIRNAIRGKKTLTTDQQVAKWFNFTERDYAAAAISLKGTFLVSEA
RGCYLSGKSNSSLSGNGYLVSAGVLQHVGILVGRALYRRIWETKNRVVEE
IDVCSSYVSEWAPIGQALFAVKRPHTGAVHQHLLFPTCVLKVI*

spliced messenger RNA

>Ggra4231.t1 ID=Ggra4231.t1|Name=Ggra4231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000880_pilon:305674..309115+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGCTAGGGCGGTCCTTTCCTACCTGCGCCTTCTGTTACGCCCTTC
ACAGTCCAATCTCTACGAGATCATTATCTTTTCTAGTACAGAGGATGATG
TAGAGTCTGGTAGACGCTGCCACGCCCGCTGCATTTTGTTTCCTAATCAG
GATCATCAGGAGCTCCAAAGATTTTCTGCAGTCTCACTTGGCACCGAAGG
AACCATCCATCTACTGGCATTTGATGCTCATAACCTCTTTTGCATTCTCC
CCAGAAGAAAATCTATCACATGGAACCTCCGACGCAGAAGCTCCATGAGG
GATGGAGCCCGGAGAGACGGATCATTCGTTGCCGGTACTCCCGTCGTTCT
TCCTCAAGAACTGGTTCAGGGTTATCCAGACTTTGAGAATCATATGCGTG
CAAACAACGAACTGATGTTTGAGCTCGAGTCTGATGGTGTAAAGGAGTTC
AAGAAGAGGTATAAGATATCTAAAGGAGGACTTTGCGTTGCAGATTGGAA
ACTCTCGGAAGAACATGAGGTCGTGACGAACGACAAATGGAATCTCTATG
CCTCTCATGAGTTGTTTCCCTACTTGAAGGCAGCAACGAATGGTGGTCAC
TTTGTTCTTCGCAACGATTGTGAAGCTACAATTATCAGACCTCTTAAGCC
GTTCCCGGACCTCTACGCCCGAGTGGCGCGTCTCAAAGCTATAGAGAACT
ATTGCCTGCAGACAGAACACGGGGTGCTAGTTGCTGCCCCGTGGCGTTTG
CTGATTAGCCTTTTATGGTTCTTGTTAAGTCTTTGCGTTGGTGTTGCTGC
AGCCGTTCACAACAGAAATGATTGGTTTGAAAGCATGGAATCGTTCTTCA
CGGCGACCACTATTGTGGCCATAACTCTCCCGGCAATCGTTTCGCTTCTT
GTGCAAGAGCCCGAGTTGATCAGGAATGCAATTCGTGGGAAGAAGACGCT
TACCACCGATCAACAAGTAGCAAAATGGTTTAACTTTACAGAGCGGGATT
ATGCAGCAGCAGCCATATCTCTCAAAGGAACGTTCTTAGTAAGTGAAGCT
AGAGGCTGCTATCTTTCCGGAAAGTCGAACTCGTCACTTTCAGGTAATGG
GTATTTGGTTTCAGCTGGAGTTCTGCAACATGTAGGAATTCTGGTTGGAA
GGGCACTATACAGGCGCATTTGGGAAACCAAGAACAGAGTCGTGGAAGAA
ATTGATGTTTGTTCGTCTTATGTCTCCGAATGGGCCCCCATAGGCCAAGC
TCTGTTTGCCGTCAAAAGACCTCATACTGGTGCTGTTCATCAGCATCTCC
TGTTTCCGACTTGTGTCTTGAAAGTGATCTAG

protein sequence of Ggra4231.t1

>Ggra4231.t1 ID=Ggra4231.t1|Name=Ggra4231.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MLARAVLSYLRLLLRPSQSNLYEIIIFSSTEDDVESGRRCHARCILFPNQ
DHQELQRFSAVSLGTEGTIHLLAFDAHNLFCILPRRKSITWNLRRRSSMR
DGARRDGSFVAGTPVVLPQELVQGYPDFENHMRANNELMFELESDGVKEF
KKRYKISKGGLCVADWKLSEEHEVVTNDKWNLYASHELFPYLKAATNGGH
FVLRNDCEATIIRPLKPFPDLYARVARLKAIENYCLQTEHGVLVAAPWRL
LISLLWFLLSLCVGVAAAVHNRNDWFESMESFFTATTIVAITLPAIVSLL
VQEPELIRNAIRGKKTLTTDQQVAKWFNFTERDYAAAAISLKGTFLVSEA
RGCYLSGKSNSSLSGNGYLVSAGVLQHVGILVGRALYRRIWETKNRVVEE
IDVCSSYVSEWAPIGQALFAVKRPHTGAVHQHLLFPTCVLKVI*

mRNA from alignment at tig00000880_pilon:305674..309115+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4231.t1 ID=Ggra4231.t1|Name=Ggra4231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3442bp|location=Sequence derived from alignment at tig00000880_pilon:305674..309115+ (Gracilaria gracilis GNS1m male)
ATGCTAGCTAGGGCGGTCCTTTCCTACCTGCGCCTTCTGTTACGCCCTTC
ACAGTCCAATCTCTACGAGATCATTATCTTTTCTAGTACAGAGGATGATG
TAGAGTCTGGTAGACGCTGCCACGCCCGCTGCATTTTGTTTCCTAATCAG
GATCATCAGGAGCTCCAAAGATTTTCTGCAGTCTCACTTGGCACCGAAGG
AACCATCCATCTACTGGCATTTGATGCTCATAACCTCTTTTGCATTCTCC
CCAGAAGAAAATCTATCACATGGAACCTCCGACGCAGAAGCTCCATGAGG
GATGGAGCCCGGAGAGACGGATCATTCGTTGCCGGTACTCCCGTCGTTCT
TCCTCAAGAACTGGTTCAGGGTTATCCAGACTTTGAGAATCATATGCGTG
CAAACAACGAACTGATGTTTGAGCTCGAGTCTGATGGTGTAAAGGAGTTC
AAGAAGAGGTATAAGATATCTAAAGGAGGACTTTGCGTTGCAGATTGGAA
ACTCTCGGAAGAACATGAGGTCGTGACGAACGACAAATGGAATCTCTATG
CCTCTCATGAGTTGTTTCCCTACTTGAAGGCAGCAACGAATGGTGGTCAC
TTTGTTCTTCGCAACGATTGTGAAGCTACAATTATCAGACCTCTTAAGCC
GTTCCCGGACCTCTACGCCCGAGTGGCGCGTCTCAAAGCTATAGAGAACT
ATTGCCTGCAGACAGAACACGGGGTGCTAGTTGCTGCCCCGTGGCGTTTG
CTGATTAGCCTTTTATGGTTCTTGTTAAGTCTTTGCGTTGGTGTTGCTGC
AGCCGTTCACAACAGAAATGATTGGTTTGAAAGCATGGAATCGTTCTTCA
CGGCGACCACTATTGTGGCCATAACTCTCCCGGCAATCGTTTCGCTTCTT
GTGCAAGAGCCCGAGTTGATCAGGAATGCAATTCGTGGGAAGAAGACGCT
TACCACCGATCAACAAGTAGCAAAATGGTTTAACTTTACAGAGCGGGATT
ATGCAGCAGCAGCCATATCTCTCAAAGGAACGTTCTTAGTAAGTGAAGCT
AGAGGCTGCTATCTTTCCGGAAAGTCGAACTCGTCACTTTCAGGTAATGG
GTATTTGGTTTCAGCTGGAGTTCTGCAACATGTAGGAATTCTGGTTGGAA
GGGCACTATACAGGCGCATTTGGGAAACCAAGAACAGAGTCGTGGAAGAA
ATTGATGTAAATGTGAGCCACCTCACAGCCCTGGAAAGAACGCGGGATCC
TCGATGTTGGGCAGCCAGCCGAGTAGACGACAGACTTGTGGGCTAAATGA
GCACGTCATGCGTTTATCTACTTCAATCCTGAGCAACCTTCACTCTCTAC
CTTATAGTCAGGGCATAAAGTCCACACATCTACTGCTTATGACGTGATCG
TGTTCCTCTCTAGGTATGTCGATTATGACGTATTCCAACTATTAATACGA
AGGTACGTTCGGTTCCGCTGATATTCGAGAGAGTGTGGATACCATTCAAG
TCAAGTAGGACTTAGGGCGTTCACAAGCTCCTACAGAAGGAATAGACCTA
AACAAGTACCTCCACCTGGCGTTCAACGCGCGGCGGCGGTACTTCTGTTA
AACGAATCCCCTTGCGGAGATCTCGACATATGGTGTGGCGGATCGGTGGG
AACACAAGAAAACCCACAACAGAAGTCGAGTCGTGTCCCTGTCGCACGGG
ATCATCGGGAACAACTTCGTTTTTCGGCACTCACTGCGGGCATCTTCGTC
ACAAGACACGCTCCACTAATTGTCGTCACTGTCAACTTGACAGAAGGGCT
CGGGAAATTTAACATTCCAAGAAAAAAGATTTTAACCCACGCAACGATTG
AGTACCGTTGGTAGTACCAACTACCGTTGGTACCAACTACCGTTGGTACC
AACTTGGTACCTGTCCAGAACTTGAGGTACAACAACTGTACAGCGGTAGC
GGTCTACTTCTCTGTACTGCGATCGTGCATGGAGACCTCCATCCTATCAA
ACCGCATGCGACAGTGATATATTGTATACAGGGTATGAGACAAGCTGAAG
TTTCTTTAGAAGTGGCAAATGTCTACATACATGTGGGAAAGAAAGATCAG
GGACGTTCTCAGTGTATTGGACGGATTCGGAGAAATCGTTCCAAATTGCT
TTCGGAGAGGGAAGCAAACAACATCTCTACGATTAGACAATCCACTGCGT
GTAGTCGGTAAACCACATCTGATATTGAAAGCCGAGTCTCCTAGTACAAC
TGAGGTACTGAACATTATGATGCAGATGGTATTCAGAGACGATGATACTC
TACACATCTTGCCACGATACAAATCAAGAGGCAGTCATTCCCTTATCCAA
ATTTGGAGAACACCCTCATCCGGCATTACTGTAAGTCTGAAACATCATCA
GACAAGATTCTTGTGATGAATTCAAGATGTTGTGAAATGGGGATCAGTGC
TGCACAAGTGCCTACCGAAGGGACCAACGGTACATCACAGTCACTCAAGA
TCTCAAAAACCCGCAGATCACCCCCGCGTTCAGCGTGTGTTAGTCAACCG
TGAGAAGCGTTTTGAGTACCGGTTGAAGGTGAACAGACAGCAGTCACTGG
AGGACGGGTTCCATTGATGTAGTTATCCAGAGGCTGAAAGCTATGCACAC
TGAATTGGAGTGCGCCTCCGAATTGAGATTTCGTGGAGAGGGGAAGGGGA
ACACGTACCTTCGTAGTTACATGTCTTGCCTTGCGCAGCTGGTACACGGA
AAACTGAAGAAAGCTCGGTTTTCGTCACATGCCGATTGCTGCCTCTGACT
CTGTATATATACAGCAACATGAAGAGAAGAAAGCTGGGAAAGACTTCTGC
AGCAGTCGAAAAAGCGCAAACAGTCAGGACACCAGCCCTGTTGCGGCCAA
GCGCCTCTTCTAGTCTAGCGGTGCACACACTTTGGCTCAGCGGCAGGGTT
CAGACTCGTTTTTGTTGTTGTTCCTTTCACGTATTGTGGAACAAACTCTG
CCGCGTTGGGATTGAGAAGGAACGATTGACGTGAACTGTCTACAACGCCT
AGCACAAATTCTGTGGCGTTCGGATTTAGTGGCGCTCTGCGTGTTGGTGC
AGGTTTGGTGCGGCCTCTGGCAACATCCGGCAGCATCACTTGCCTAGCCG
TCTCTGCGTCTGGACTGATTCGCGTGCGAACCATTATTTTGTTGCGAGTC
GGAGACTTTGTACTGGTGTACAGGTTTGTTCGTCTTATGTCTCCGAATGG
GCCCCCATAGGCCAAGCTCTGTTTGCCGTCAAAAGGTATCGTATGCCGTA
AATAACAGCGCGTAGGCGTATGAGGGGCCTCAGTCTTTCTGCCCACACCA
CTGAGAACACACGCTAATCCCAATCCAGACCTCATACTGGTGCTGTTCAT
CAGCATCTCCTGTTTCCGACTTGTGTCTTGAAAGTGATCTAG

Coding sequence (CDS) from alignment at tig00000880_pilon:305674..309115+

>Ggra4231.t1 ID=Ggra4231.t1|Name=Ggra4231.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000880_pilon:305674..309115+ (Gracilaria gracilis GNS1m male)
ATGCTAGCTAGGGCGGTCCTTTCCTACCTGCGCCTTCTGTTACGCCCTTC
ACAGTCCAATCTCTACGAGATCATTATCTTTTCTAGTACAGAGGATGATG
TAGAGTCTGGTAGACGCTGCCACGCCCGCTGCATTTTGTTTCCTAATCAG
GATCATCAGGAGCTCCAAAGATTTTCTGCAGTCTCACTTGGCACCGAAGG
AACCATCCATCTACTGGCATTTGATGCTCATAACCTCTTTTGCATTCTCC
CCAGAAGAAAATCTATCACATGGAACCTCCGACGCAGAAGCTCCATGAGG
GATGGAGCCCGGAGAGACGGATCATTCGTTGCCGGTACTCCCGTCGTTCT
TCCTCAAGAACTGGTTCAGGGTTATCCAGACTTTGAGAATCATATGCGTG
CAAACAACGAACTGATGTTTGAGCTCGAGTCTGATGGTGTAAAGGAGTTC
AAGAAGAGGTATAAGATATCTAAAGGAGGACTTTGCGTTGCAGATTGGAA
ACTCTCGGAAGAACATGAGGTCGTGACGAACGACAAATGGAATCTCTATG
CCTCTCATGAGTTGTTTCCCTACTTGAAGGCAGCAACGAATGGTGGTCAC
TTTGTTCTTCGCAACGATTGTGAAGCTACAATTATCAGACCTCTTAAGCC
GTTCCCGGACCTCTACGCCCGAGTGGCGCGTCTCAAAGCTATAGAGAACT
ATTGCCTGCAGACAGAACACGGGGTGCTAGTTGCTGCCCCGTGGCGTTTG
CTGATTAGCCTTTTATGGTTCTTGTTAAGTCTTTGCGTTGGTGTTGCTGC
AGCCGTTCACAACAGAAATGATTGGTTTGAAAGCATGGAATCGTTCTTCA
CGGCGACCACTATTGTGGCCATAACTCTCCCGGCAATCGTTTCGCTTCTT
GTGCAAGAGCCCGAGTTGATCAGGAATGCAATTCGTGGGAAGAAGACGCT
TACCACCGATCAACAAGTAGCAAAATGGTTTAACTTTACAGAGCGGGATT
ATGCAGCAGCAGCCATATCTCTCAAAGGAACGTTCTTAGTAAGTGAAGCT
AGAGGCTGCTATCTTTCCGGAAAGTCGAACTCGTCACTTTCAGGTAATGG
GTATTTGGTTTCAGCTGGAGTTCTGCAACATGTAGGAATTCTGGTTGGAA
GGGCACTATACAGGCGCATTTGGGAAACCAAGAACAGAGTCGTGGAAGAA
ATTGATGTTTGTTCGTCTTATGTCTCCGAATGGGCCCCCATAGGCCAAGC
TCTGTTTGCCGTCAAAAGACCTCATACTGGTGCTGTTCATCAGCATCTCC
TGTTTCCGACTTGTGTCTTGAAAGTGATCTAG