Ggra4227.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4227.t1
Unique NameGgra4227.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:301307..302626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72664.XP_006392177.1
PFAMsFer4_14,Radical_SAM
Max annot lvl35493|Streptophyta
KEGG koko:K06941
Evalue1.96e-131
EggNOG OGsCOG0820@1|root,2QV91@2759|Eukaryota,37KF1@33090|Viridiplantae,3GDQQ@35493|Streptophyta,3HSMH@3699|Brassicales
EC2.1.1.192
Description4Fe-4S single cluster domain
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4227Ggra4227Gracilaria gracilis GNS1m malegenetig00000880_pilon 301307..302626 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4227.t1.start1Ggra4227.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 301307..301309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4227.t1.CDS1Ggra4227.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 301307..302626 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4227.t1.exon1Ggra4227.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 301307..302626 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4227.t1.stop1Ggra4227.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 302624..302626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4227.t1Ggra4227.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 301307..302626 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4227.t1 ID=Ggra4227.t1|Name=Ggra4227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
MSHSSNAQRVRKRRLATQRSVQPDGKIHHLKGDVSPATITAKPFELPIDS
GGMVLLKSLTLPEMEDWVENSLDEKRFRARQLWQWMYKAERLAATFDEMT
DLSKSFRELLKKHARLDALGLNSVHKSADGTRKITYRLDSGGVIETVLIP
AEGRTTICVSSQWGCALNCQFCLTGRTGYKRSLTQGEIVDQLVQSMRLFG
AESRITNVVFMGEGEPAHNLDNVLRAVDTMIHDQGLHVSPRKVTVSTSGL
VPEIKRFADESRANLAVSLHATNDELRNWLMPINRKYGLSELMQTLRDVF
PRKNGHQRKVMFQYVMLKGVNDSLQDAKELLRLTAGVPCKINLIQFNWHE
GTEFEASDEGTMLAFQEYLSGKGLTVTIRRSRGDDKMMACGQLGKLGSVQ
APRLRVPDKYANAVRNTGNAQRDGGQGGVRAMRTKARSA*
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spliced messenger RNA

>Ggra4227.t1 ID=Ggra4227.t1|Name=Ggra4227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000880_pilon:301307..302626+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCATTCCTCTAATGCTCAAAGAGTCAGAAAACGGCGTCTTGCTAC
GCAGCGAAGCGTCCAACCAGACGGAAAGATCCATCACCTAAAAGGGGATG
TCTCTCCAGCCACGATTACCGCCAAACCGTTTGAGCTACCTATAGATTCG
GGCGGAATGGTGCTGCTCAAGTCTCTTACTCTGCCCGAAATGGAAGACTG
GGTTGAAAATAGTCTTGATGAGAAAAGGTTTCGTGCAAGACAACTCTGGC
AGTGGATGTACAAAGCAGAGAGACTGGCCGCTACATTCGATGAAATGACG
GACTTGTCGAAATCATTTCGCGAACTGCTGAAGAAGCATGCTCGATTGGA
TGCGCTCGGTCTGAATTCGGTGCACAAGAGCGCGGATGGGACACGAAAGA
TAACGTATAGACTGGACTCAGGTGGTGTGATTGAGACGGTGCTCATCCCC
GCCGAGGGTCGCACGACGATCTGCGTGTCCAGTCAATGGGGATGTGCATT
GAACTGTCAGTTTTGTCTGACGGGACGGACAGGTTACAAGCGCTCATTAA
CGCAAGGCGAGATTGTGGATCAGTTGGTACAGTCCATGCGTCTGTTCGGC
GCAGAAAGCCGAATTACGAACGTGGTGTTCATGGGTGAAGGGGAGCCTGC
TCATAATCTAGACAACGTTCTTCGCGCCGTGGACACAATGATACACGATC
AAGGACTGCATGTTAGCCCGAGAAAGGTGACGGTGTCTACGTCTGGGTTG
GTTCCAGAGATCAAACGATTTGCCGACGAAAGCAGAGCAAATCTTGCAGT
TTCTTTACATGCTACGAATGATGAGTTGAGAAACTGGCTAATGCCGATCA
ACCGCAAGTACGGGCTATCCGAACTAATGCAAACGTTACGTGATGTGTTT
CCTCGCAAGAACGGTCACCAACGCAAGGTGATGTTTCAGTACGTGATGCT
CAAAGGTGTGAATGACTCGCTGCAAGACGCGAAAGAGTTATTACGATTGA
CGGCCGGAGTGCCGTGCAAAATCAACTTGATTCAGTTCAATTGGCATGAG
GGTACGGAGTTTGAGGCTAGTGATGAGGGCACGATGTTGGCGTTCCAGGA
GTATCTTAGCGGAAAAGGATTGACCGTGACGATCCGACGCTCCAGAGGCG
ATGACAAGATGATGGCATGCGGTCAACTGGGGAAGCTGGGTAGCGTACAG
GCGCCACGTCTGCGGGTGCCTGACAAATACGCAAATGCTGTGCGGAACAC
GGGAAATGCGcagcgcgacggaggccagggcggtgtgcgagcgatgcgta
ccaaagccaggagcgcttag
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protein sequence of Ggra4227.t1

>Ggra4227.t1 ID=Ggra4227.t1|Name=Ggra4227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
MSHSSNAQRVRKRRLATQRSVQPDGKIHHLKGDVSPATITAKPFELPIDS
GGMVLLKSLTLPEMEDWVENSLDEKRFRARQLWQWMYKAERLAATFDEMT
DLSKSFRELLKKHARLDALGLNSVHKSADGTRKITYRLDSGGVIETVLIP
AEGRTTICVSSQWGCALNCQFCLTGRTGYKRSLTQGEIVDQLVQSMRLFG
AESRITNVVFMGEGEPAHNLDNVLRAVDTMIHDQGLHVSPRKVTVSTSGL
VPEIKRFADESRANLAVSLHATNDELRNWLMPINRKYGLSELMQTLRDVF
PRKNGHQRKVMFQYVMLKGVNDSLQDAKELLRLTAGVPCKINLIQFNWHE
GTEFEASDEGTMLAFQEYLSGKGLTVTIRRSRGDDKMMACGQLGKLGSVQ
APRLRVPDKYANAVRNTGNAQRDGGQGGVRAMRTKARSA*
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mRNA from alignment at tig00000880_pilon:301307..302626+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4227.t1 ID=Ggra4227.t1|Name=Ggra4227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000880_pilon:301307..302626+ (Gracilaria gracilis GNS1m male)
ATGTCTCATTCCTCTAATGCTCAAAGAGTCAGAAAACGGCGTCTTGCTAC
GCAGCGAAGCGTCCAACCAGACGGAAAGATCCATCACCTAAAAGGGGATG
TCTCTCCAGCCACGATTACCGCCAAACCGTTTGAGCTACCTATAGATTCG
GGCGGAATGGTGCTGCTCAAGTCTCTTACTCTGCCCGAAATGGAAGACTG
GGTTGAAAATAGTCTTGATGAGAAAAGGTTTCGTGCAAGACAACTCTGGC
AGTGGATGTACAAAGCAGAGAGACTGGCCGCTACATTCGATGAAATGACG
GACTTGTCGAAATCATTTCGCGAACTGCTGAAGAAGCATGCTCGATTGGA
TGCGCTCGGTCTGAATTCGGTGCACAAGAGCGCGGATGGGACACGAAAGA
TAACGTATAGACTGGACTCAGGTGGTGTGATTGAGACGGTGCTCATCCCC
GCCGAGGGTCGCACGACGATCTGCGTGTCCAGTCAATGGGGATGTGCATT
GAACTGTCAGTTTTGTCTGACGGGACGGACAGGTTACAAGCGCTCATTAA
CGCAAGGCGAGATTGTGGATCAGTTGGTACAGTCCATGCGTCTGTTCGGC
GCAGAAAGCCGAATTACGAACGTGGTGTTCATGGGTGAAGGGGAGCCTGC
TCATAATCTAGACAACGTTCTTCGCGCCGTGGACACAATGATACACGATC
AAGGACTGCATGTTAGCCCGAGAAAGGTGACGGTGTCTACGTCTGGGTTG
GTTCCAGAGATCAAACGATTTGCCGACGAAAGCAGAGCAAATCTTGCAGT
TTCTTTACATGCTACGAATGATGAGTTGAGAAACTGGCTAATGCCGATCA
ACCGCAAGTACGGGCTATCCGAACTAATGCAAACGTTACGTGATGTGTTT
CCTCGCAAGAACGGTCACCAACGCAAGGTGATGTTTCAGTACGTGATGCT
CAAAGGTGTGAATGACTCGCTGCAAGACGCGAAAGAGTTATTACGATTGA
CGGCCGGAGTGCCGTGCAAAATCAACTTGATTCAGTTCAATTGGCATGAG
GGTACGGAGTTTGAGGCTAGTGATGAGGGCACGATGTTGGCGTTCCAGGA
GTATCTTAGCGGAAAAGGATTGACCGTGACGATCCGACGCTCCAGAGGCG
ATGACAAGATGATGGCATGCGGTCAACTGGGGAAGCTGGGTAGCGTACAG
GCGCCACGTCTGCGGGTGCCTGACAAATACGCAAATGCTGTGCGGAACAC
GGGAAATGCGcagcgcgacggaggccagggcggtgtgcgagcgatgcgta
ccaaagccaggagcgcttag
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Coding sequence (CDS) from alignment at tig00000880_pilon:301307..302626+

>Ggra4227.t1 ID=Ggra4227.t1|Name=Ggra4227.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000880_pilon:301307..302626+ (Gracilaria gracilis GNS1m male)
ATGTCTCATTCCTCTAATGCTCAAAGAGTCAGAAAACGGCGTCTTGCTAC
GCAGCGAAGCGTCCAACCAGACGGAAAGATCCATCACCTAAAAGGGGATG
TCTCTCCAGCCACGATTACCGCCAAACCGTTTGAGCTACCTATAGATTCG
GGCGGAATGGTGCTGCTCAAGTCTCTTACTCTGCCCGAAATGGAAGACTG
GGTTGAAAATAGTCTTGATGAGAAAAGGTTTCGTGCAAGACAACTCTGGC
AGTGGATGTACAAAGCAGAGAGACTGGCCGCTACATTCGATGAAATGACG
GACTTGTCGAAATCATTTCGCGAACTGCTGAAGAAGCATGCTCGATTGGA
TGCGCTCGGTCTGAATTCGGTGCACAAGAGCGCGGATGGGACACGAAAGA
TAACGTATAGACTGGACTCAGGTGGTGTGATTGAGACGGTGCTCATCCCC
GCCGAGGGTCGCACGACGATCTGCGTGTCCAGTCAATGGGGATGTGCATT
GAACTGTCAGTTTTGTCTGACGGGACGGACAGGTTACAAGCGCTCATTAA
CGCAAGGCGAGATTGTGGATCAGTTGGTACAGTCCATGCGTCTGTTCGGC
GCAGAAAGCCGAATTACGAACGTGGTGTTCATGGGTGAAGGGGAGCCTGC
TCATAATCTAGACAACGTTCTTCGCGCCGTGGACACAATGATACACGATC
AAGGACTGCATGTTAGCCCGAGAAAGGTGACGGTGTCTACGTCTGGGTTG
GTTCCAGAGATCAAACGATTTGCCGACGAAAGCAGAGCAAATCTTGCAGT
TTCTTTACATGCTACGAATGATGAGTTGAGAAACTGGCTAATGCCGATCA
ACCGCAAGTACGGGCTATCCGAACTAATGCAAACGTTACGTGATGTGTTT
CCTCGCAAGAACGGTCACCAACGCAAGGTGATGTTTCAGTACGTGATGCT
CAAAGGTGTGAATGACTCGCTGCAAGACGCGAAAGAGTTATTACGATTGA
CGGCCGGAGTGCCGTGCAAAATCAACTTGATTCAGTTCAATTGGCATGAG
GGTACGGAGTTTGAGGCTAGTGATGAGGGCACGATGTTGGCGTTCCAGGA
GTATCTTAGCGGAAAAGGATTGACCGTGACGATCCGACGCTCCAGAGGCG
ATGACAAGATGATGGCATGCGGTCAACTGGGGAAGCTGGGTAGCGTACAG
GCGCCACGTCTGCGGGTGCCTGACAAATACGCAAATGCTGTGCGGAACAC
GGGAAATGCGcagcgcgacggaggccagggcggtgtgcgagcgatgcgta
ccaaagccaggagcgcttag
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