Ggra4225.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4225.t1
Unique NameGgra4225.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:298016..298606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4225Ggra4225Gracilaria gracilis GNS1m malegenetig00000880_pilon 298016..298606 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4225.t1.stop1Ggra4225.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 298016..298018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4225.t1.CDS1Ggra4225.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 298016..298606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4225.t1.exon1Ggra4225.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 298016..298606 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4225.t1.start1Ggra4225.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 298604..298606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4225.t1Ggra4225.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 298016..298606 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4225.t1 ID=Ggra4225.t1|Name=Ggra4225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=197bp
MSQEESLQPQQAESPDVAAPLLPDLSGVQHIQDTFTEGKRRYKVNNAEIN
LSFNRAMIKINARNANVNIKGDFGIVAINQASGNVKVTLRAGIVFVSQNY
GYTQVCMGSGIVGCATGVGVNVICVGVGAAASAVGAGVNIALVALGAVAN
ASALGIGISALGIGAGAIATGAGISFIAHLVGAAASATAFGYSKKL*
back to top

spliced messenger RNA

>Ggra4225.t1 ID=Ggra4225.t1|Name=Ggra4225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000880_pilon:298016..298606- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCAGGAAGAATCTCTTCAACCACAGCAGGCTGAAAGCCCCGACGT
GGCCGCTCCGCTTCTTCCAGACCTCTCGGGCGTCCAACATATCCAAGACA
CATTCACTGAAGGGAAACGCCGTTACAAAGTCAACAATGCTGAAATCAAC
CTCTCTTTCAACAGGGCAATGATCAAGATCAACGCCCGCAATGCAAATGT
GAATATCAAAGGAGACTTTGGGATAGTCGCAATCAACCAGGCGTCCGGAA
ACGTCAAAGTTACTCTTCGCGCAGGTATTGTGTTTGTGTCGCAGAATTAT
GGTTATACTCAGGTTTGCATGGGCAGCGGCATTGTTGGCTGTGCCACAGG
CGTGGGTGTGAACGTCATCTGTGTAGGCGTTGGCGCTGCAGCATCGGCTG
TCGGTGCCGGCGTTAATATTGCACTTGTTGCTCTCGGTGCTGTCGCAAAC
GCTTCCGCGCTGGGGATAGGTATATCCGCGCTTGGCATTGGCGCCGGGGC
CATCGCAACAGGCGCCGGCATCAGTTTCATCGCTCATCTTGTCGGCGCTG
CTGCTTCAGCAACTGCATTTGGTTATTCGAAAAAACTGTGA
back to top

protein sequence of Ggra4225.t1

>Ggra4225.t1 ID=Ggra4225.t1|Name=Ggra4225.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MSQEESLQPQQAESPDVAAPLLPDLSGVQHIQDTFTEGKRRYKVNNAEIN
LSFNRAMIKINARNANVNIKGDFGIVAINQASGNVKVTLRAGIVFVSQNY
GYTQVCMGSGIVGCATGVGVNVICVGVGAAASAVGAGVNIALVALGAVAN
ASALGIGISALGIGAGAIATGAGISFIAHLVGAAASATAFGYSKKL*
back to top

mRNA from alignment at tig00000880_pilon:298016..298606-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4225.t1 ID=Ggra4225.t1|Name=Ggra4225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000880_pilon:298016..298606- (Gracilaria gracilis GNS1m male)
ATGTCCCAGGAAGAATCTCTTCAACCACAGCAGGCTGAAAGCCCCGACGT
GGCCGCTCCGCTTCTTCCAGACCTCTCGGGCGTCCAACATATCCAAGACA
CATTCACTGAAGGGAAACGCCGTTACAAAGTCAACAATGCTGAAATCAAC
CTCTCTTTCAACAGGGCAATGATCAAGATCAACGCCCGCAATGCAAATGT
GAATATCAAAGGAGACTTTGGGATAGTCGCAATCAACCAGGCGTCCGGAA
ACGTCAAAGTTACTCTTCGCGCAGGTATTGTGTTTGTGTCGCAGAATTAT
GGTTATACTCAGGTTTGCATGGGCAGCGGCATTGTTGGCTGTGCCACAGG
CGTGGGTGTGAACGTCATCTGTGTAGGCGTTGGCGCTGCAGCATCGGCTG
TCGGTGCCGGCGTTAATATTGCACTTGTTGCTCTCGGTGCTGTCGCAAAC
GCTTCCGCGCTGGGGATAGGTATATCCGCGCTTGGCATTGGCGCCGGGGC
CATCGCAACAGGCGCCGGCATCAGTTTCATCGCTCATCTTGTCGGCGCTG
CTGCTTCAGCAACTGCATTTGGTTATTCGAAAAAACTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000880_pilon:298016..298606-

>Ggra4225.t1 ID=Ggra4225.t1|Name=Ggra4225.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000880_pilon:298016..298606- (Gracilaria gracilis GNS1m male)
ATGTCCCAGGAAGAATCTCTTCAACCACAGCAGGCTGAAAGCCCCGACGT
GGCCGCTCCGCTTCTTCCAGACCTCTCGGGCGTCCAACATATCCAAGACA
CATTCACTGAAGGGAAACGCCGTTACAAAGTCAACAATGCTGAAATCAAC
CTCTCTTTCAACAGGGCAATGATCAAGATCAACGCCCGCAATGCAAATGT
GAATATCAAAGGAGACTTTGGGATAGTCGCAATCAACCAGGCGTCCGGAA
ACGTCAAAGTTACTCTTCGCGCAGGTATTGTGTTTGTGTCGCAGAATTAT
GGTTATACTCAGGTTTGCATGGGCAGCGGCATTGTTGGCTGTGCCACAGG
CGTGGGTGTGAACGTCATCTGTGTAGGCGTTGGCGCTGCAGCATCGGCTG
TCGGTGCCGGCGTTAATATTGCACTTGTTGCTCTCGGTGCTGTCGCAAAC
GCTTCCGCGCTGGGGATAGGTATATCCGCGCTTGGCATTGGCGCCGGGGC
CATCGCAACAGGCGCCGGCATCAGTTTCATCGCTCATCTTGTCGGCGCTG
CTGCTTCAGCAACTGCATTTGGTTATTCGAAAAAACTGTGA
back to top