Ggra4220.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4220.t1
Unique NameGgra4220.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:134640..135275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4220Ggra4220Gracilaria gracilis GNS1m malegenetig00000880_pilon 134640..135275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4220.t1.stop1Ggra4220.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 134640..134642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4220.t1.CDS1Ggra4220.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 134640..135275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4220.t1.exon1Ggra4220.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 134640..135275 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4220.t1.start1Ggra4220.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 135273..135275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4220.t1Ggra4220.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 134640..135275 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4220.t1 ID=Ggra4220.t1|Name=Ggra4220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MEIYRKRAKRKDASGVYQYVPPFKFKTAAVYLSKQPKLEAEHVKEEPREI
NQDGVGHAVSSSNEKIESEERASDMATSSENEILPLNCNKMKPAQARPPG
VKKMKQVEQLQRQSSNMNKTLQELSQKVDVGNDVLMGIKQQNEKLADTEN
DYKLLQLLAKDSDDYKLILGNLLAERKLRLGKRRPARDPDLGKPTKRVRT
IDDTGGEGIDE*
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spliced messenger RNA

>Ggra4220.t1 ID=Ggra4220.t1|Name=Ggra4220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000880_pilon:134640..135275- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTTACAGGAAACGAGCAAAACGGAAGGATGCAAGTGGTGTTTA
TCAGTACGTACCACCATTTAAATTCAAAACGGCTGCGGTATACCTCTCCA
AACAGCCCAAATTGGAGGCAGAGCATGTGAAGGAAGAACCTAGAGAGATC
AATCAAGACGGCGTAGGGCATGCTGTTTCCAGCAGCAATGAAAAGATTGA
GAGCGAAGAGAGAGCAAGTGATATGGCTACCAGTAGCGAAAACGAAATTC
TGCCATTGAACTGTAACAAGATGAAGCCCGCCCAAGCTCGCCCTCCAGGT
GTAAAGAAGATGAAGCAAGTGGAGCAACTGCAGAGACAAAGCTCAAATAT
GAATAAGACATTGCAAGAGTTGTCACAAAAAGTGGATGTAGGCAATGACG
TATTGATGGGAATAAAACAACAGAATGAAAAACTTGCTGATACGGAAAAC
GATTACAAACTACTGCAACTCCTTGCCAAGGACTCGGACGACTACAAGTT
GATATTGGGAAATTTATTAGCGGAACGCAAGTTGAGGTTGGGGAAACGTC
GGCCTGCTAGGGATCCGGACCTTGGAAAACCCACCAAGAGGGTGAGGACG
ATTGACGATACAGGAGGTGAAGGTATAGATGAGTGA
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protein sequence of Ggra4220.t1

>Ggra4220.t1 ID=Ggra4220.t1|Name=Ggra4220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MEIYRKRAKRKDASGVYQYVPPFKFKTAAVYLSKQPKLEAEHVKEEPREI
NQDGVGHAVSSSNEKIESEERASDMATSSENEILPLNCNKMKPAQARPPG
VKKMKQVEQLQRQSSNMNKTLQELSQKVDVGNDVLMGIKQQNEKLADTEN
DYKLLQLLAKDSDDYKLILGNLLAERKLRLGKRRPARDPDLGKPTKRVRT
IDDTGGEGIDE*
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mRNA from alignment at tig00000880_pilon:134640..135275-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4220.t1 ID=Ggra4220.t1|Name=Ggra4220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000880_pilon:134640..135275- (Gracilaria gracilis GNS1m male)
ATGGAAATTTACAGGAAACGAGCAAAACGGAAGGATGCAAGTGGTGTTTA
TCAGTACGTACCACCATTTAAATTCAAAACGGCTGCGGTATACCTCTCCA
AACAGCCCAAATTGGAGGCAGAGCATGTGAAGGAAGAACCTAGAGAGATC
AATCAAGACGGCGTAGGGCATGCTGTTTCCAGCAGCAATGAAAAGATTGA
GAGCGAAGAGAGAGCAAGTGATATGGCTACCAGTAGCGAAAACGAAATTC
TGCCATTGAACTGTAACAAGATGAAGCCCGCCCAAGCTCGCCCTCCAGGT
GTAAAGAAGATGAAGCAAGTGGAGCAACTGCAGAGACAAAGCTCAAATAT
GAATAAGACATTGCAAGAGTTGTCACAAAAAGTGGATGTAGGCAATGACG
TATTGATGGGAATAAAACAACAGAATGAAAAACTTGCTGATACGGAAAAC
GATTACAAACTACTGCAACTCCTTGCCAAGGACTCGGACGACTACAAGTT
GATATTGGGAAATTTATTAGCGGAACGCAAGTTGAGGTTGGGGAAACGTC
GGCCTGCTAGGGATCCGGACCTTGGAAAACCCACCAAGAGGGTGAGGACG
ATTGACGATACAGGAGGTGAAGGTATAGATGAGTGA
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Coding sequence (CDS) from alignment at tig00000880_pilon:134640..135275-

>Ggra4220.t1 ID=Ggra4220.t1|Name=Ggra4220.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000880_pilon:134640..135275- (Gracilaria gracilis GNS1m male)
ATGGAAATTTACAGGAAACGAGCAAAACGGAAGGATGCAAGTGGTGTTTA
TCAGTACGTACCACCATTTAAATTCAAAACGGCTGCGGTATACCTCTCCA
AACAGCCCAAATTGGAGGCAGAGCATGTGAAGGAAGAACCTAGAGAGATC
AATCAAGACGGCGTAGGGCATGCTGTTTCCAGCAGCAATGAAAAGATTGA
GAGCGAAGAGAGAGCAAGTGATATGGCTACCAGTAGCGAAAACGAAATTC
TGCCATTGAACTGTAACAAGATGAAGCCCGCCCAAGCTCGCCCTCCAGGT
GTAAAGAAGATGAAGCAAGTGGAGCAACTGCAGAGACAAAGCTCAAATAT
GAATAAGACATTGCAAGAGTTGTCACAAAAAGTGGATGTAGGCAATGACG
TATTGATGGGAATAAAACAACAGAATGAAAAACTTGCTGATACGGAAAAC
GATTACAAACTACTGCAACTCCTTGCCAAGGACTCGGACGACTACAAGTT
GATATTGGGAAATTTATTAGCGGAACGCAAGTTGAGGTTGGGGAAACGTC
GGCCTGCTAGGGATCCGGACCTTGGAAAACCCACCAAGAGGGTGAGGACG
ATTGACGATACAGGAGGTGAAGGTATAGATGAGTGA
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