Ggra4219.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4219.t1
Unique Name	Ggra4219.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000880_pilon	contig	tig00000880_pilon:133421..134398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AES79342
PFAMs	Plant_tran
Max annot lvl	35493\|Streptophyta
Evalue	7.24e-41
EggNOG OGs	28IUF@1\|root,2QR5Z@2759\|Eukaryota,37STI@33090\|Viridiplantae,3GB85@35493\|Streptophyta,4JTJK@91835\|fabids
Description	Ribosomal protein-like protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4219	Ggra4219	Gracilaria gracilis GNS1m male	gene	tig00000880_pilon 133421..134398 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4219.t1.start1	Ggra4219.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000880_pilon 133421..133423 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4219.t1.CDS1	Ggra4219.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000880_pilon 133421..134398 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4219.t1.exon1	Ggra4219.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000880_pilon 133421..134398 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4219.t1.stop1	Ggra4219.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000880_pilon 134396..134398 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4219.t1	Ggra4219.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000880_pilon 133421..134398 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000880_pilon:133421..134398+
coding sequence from alignment at tig00000880_pilon:133421..134398+

mRNA sequence

>Ggra4219.t1 ID=Ggra4219.t1|Name=Ggra4219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MSAEILRQYFEHFCRHIVELYGSSFLNRRPSRAELDAIQDRYTAFGFARC
IGAVNCSKLEWKNCPYSLKGQYHNSKESKLTTLEIEAWCDRDLYIWHWFA
GRCGTNNDQTMLPVSPLFNDTLNDTHKFRLSTDYRIPASTAMRELPYYLA
DGIYPDCPLVAKPLHHPSNDGQTWYTKRQEGLRKGKERAFRVIQARFFVM
IRENYQWYKEDIVLVSQTCLILHNMIVRMNQNGKFRDDEAEEGAVLDIVG
EMYEMEQEYANTGRAENEQHNLEREEETQSTSMDWEAFGIKERYMTTTTA
FRELQADLIESVKATKNTTYSRTYK*

spliced messenger RNA

>Ggra4219.t1 ID=Ggra4219.t1|Name=Ggra4219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000880_pilon:133421..134398+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCAGAAATATTACGTCAGTACTTTGAACATTTCTGCAGACACAT
TGTGGAGTTGTACGGAAGTAGTTTCTTGAACAGAAGACCAAGTAGGGCGG
AGTTGGATGCAATTCAAGATCGATATACGGCATTTGGTTTTGCCAGATGT
ATTGGTGCTGTAAATTGCAGTAAACTGGAATGGAAGAATTGCCCGTATTC
GTTGAAGGGCCAATACCACAATTCGAAGGAGAGCAAACTTACCACTTTAG
AAATTGAAGCATGGTGCGACAGAGATTTATACATATGGCATTGGTTCGCG
GGAAGATGTGGCACCAACAACGACCAGACAATGCTACCTGTTTCACCTCT
TTTCAATGACACACTGAATGATACGCATAAGTTCCGGCTCTCAACTGACT
ATAGAATTCCTGCGTCTACGGCGATGCGAGAACTACCATATTATCTAGCA
GATGGTATTTATCCCGACTGTCCGTTAGTTGCGAAACCACTCCATCACCC
CTCCAACGATGGGCAAACATGGTATACAAAGCGACAGGAAGGACTACGCA
AGGGTAAAGAGCGTGCCTTCAGAGTGATTCAGGCTCGGTTTTTTGTGATG
ATACGTGAGAACTATCAGTGGTACAAAGAAGATATAGTACTGGTGAGTCA
AACATGTCTAATTCTACACAACATGATTGTTCGTATGAATCAAAATGGGA
AGTTTAGAGACGATGAGGCAGAAGAAGGTGCAGTTCTAGACATTGTGGGG
GAGATGTATGAAATGGAGCAAGAATATGCAAATACAGGACGTGCTGAGAA
CGAGCAACACAATTTAGAACGCGAGGAAGAGACACAAAGCACATCGATGG
ATTGGGAAGCATTTGGTATAAAAGAGCGCTACATGACAACGACAACGGCA
TTTAGAGAATTACAAGCGGACTTGATTGAAAGTGTGAAAGCTACGAAGAA
TACCACATACAGTAGGACATATAAATAG

protein sequence of Ggra4219.t1

>Ggra4219.t1 ID=Ggra4219.t1|Name=Ggra4219.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MSAEILRQYFEHFCRHIVELYGSSFLNRRPSRAELDAIQDRYTAFGFARC
IGAVNCSKLEWKNCPYSLKGQYHNSKESKLTTLEIEAWCDRDLYIWHWFA
GRCGTNNDQTMLPVSPLFNDTLNDTHKFRLSTDYRIPASTAMRELPYYLA
DGIYPDCPLVAKPLHHPSNDGQTWYTKRQEGLRKGKERAFRVIQARFFVM
IRENYQWYKEDIVLVSQTCLILHNMIVRMNQNGKFRDDEAEEGAVLDIVG
EMYEMEQEYANTGRAENEQHNLEREEETQSTSMDWEAFGIKERYMTTTTA
FRELQADLIESVKATKNTTYSRTYK*

mRNA from alignment at tig00000880_pilon:133421..134398+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4219.t1 ID=Ggra4219.t1|Name=Ggra4219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000880_pilon:133421..134398+ (Gracilaria gracilis GNS1m male)
ATGTCGGCAGAAATATTACGTCAGTACTTTGAACATTTCTGCAGACACAT
TGTGGAGTTGTACGGAAGTAGTTTCTTGAACAGAAGACCAAGTAGGGCGG
AGTTGGATGCAATTCAAGATCGATATACGGCATTTGGTTTTGCCAGATGT
ATTGGTGCTGTAAATTGCAGTAAACTGGAATGGAAGAATTGCCCGTATTC
GTTGAAGGGCCAATACCACAATTCGAAGGAGAGCAAACTTACCACTTTAG
AAATTGAAGCATGGTGCGACAGAGATTTATACATATGGCATTGGTTCGCG
GGAAGATGTGGCACCAACAACGACCAGACAATGCTACCTGTTTCACCTCT
TTTCAATGACACACTGAATGATACGCATAAGTTCCGGCTCTCAACTGACT
ATAGAATTCCTGCGTCTACGGCGATGCGAGAACTACCATATTATCTAGCA
GATGGTATTTATCCCGACTGTCCGTTAGTTGCGAAACCACTCCATCACCC
CTCCAACGATGGGCAAACATGGTATACAAAGCGACAGGAAGGACTACGCA
AGGGTAAAGAGCGTGCCTTCAGAGTGATTCAGGCTCGGTTTTTTGTGATG
ATACGTGAGAACTATCAGTGGTACAAAGAAGATATAGTACTGGTGAGTCA
AACATGTCTAATTCTACACAACATGATTGTTCGTATGAATCAAAATGGGA
AGTTTAGAGACGATGAGGCAGAAGAAGGTGCAGTTCTAGACATTGTGGGG
GAGATGTATGAAATGGAGCAAGAATATGCAAATACAGGACGTGCTGAGAA
CGAGCAACACAATTTAGAACGCGAGGAAGAGACACAAAGCACATCGATGG
ATTGGGAAGCATTTGGTATAAAAGAGCGCTACATGACAACGACAACGGCA
TTTAGAGAATTACAAGCGGACTTGATTGAAAGTGTGAAAGCTACGAAGAA
TACCACATACAGTAGGACATATAAATAG

Coding sequence (CDS) from alignment at tig00000880_pilon:133421..134398+

>Ggra4219.t1 ID=Ggra4219.t1|Name=Ggra4219.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000880_pilon:133421..134398+ (Gracilaria gracilis GNS1m male)
ATGTCGGCAGAAATATTACGTCAGTACTTTGAACATTTCTGCAGACACAT
TGTGGAGTTGTACGGAAGTAGTTTCTTGAACAGAAGACCAAGTAGGGCGG
AGTTGGATGCAATTCAAGATCGATATACGGCATTTGGTTTTGCCAGATGT
ATTGGTGCTGTAAATTGCAGTAAACTGGAATGGAAGAATTGCCCGTATTC
GTTGAAGGGCCAATACCACAATTCGAAGGAGAGCAAACTTACCACTTTAG
AAATTGAAGCATGGTGCGACAGAGATTTATACATATGGCATTGGTTCGCG
GGAAGATGTGGCACCAACAACGACCAGACAATGCTACCTGTTTCACCTCT
TTTCAATGACACACTGAATGATACGCATAAGTTCCGGCTCTCAACTGACT
ATAGAATTCCTGCGTCTACGGCGATGCGAGAACTACCATATTATCTAGCA
GATGGTATTTATCCCGACTGTCCGTTAGTTGCGAAACCACTCCATCACCC
CTCCAACGATGGGCAAACATGGTATACAAAGCGACAGGAAGGACTACGCA
AGGGTAAAGAGCGTGCCTTCAGAGTGATTCAGGCTCGGTTTTTTGTGATG
ATACGTGAGAACTATCAGTGGTACAAAGAAGATATAGTACTGGTGAGTCA
AACATGTCTAATTCTACACAACATGATTGTTCGTATGAATCAAAATGGGA
AGTTTAGAGACGATGAGGCAGAAGAAGGTGCAGTTCTAGACATTGTGGGG
GAGATGTATGAAATGGAGCAAGAATATGCAAATACAGGACGTGCTGAGAA
CGAGCAACACAATTTAGAACGCGAGGAAGAGACACAAAGCACATCGATGG
ATTGGGAAGCATTTGGTATAAAAGAGCGCTACATGACAACGACAACGGCA
TTTAGAGAATTACAAGCGGACTTGATTGAAAGTGTGAAAGCTACGAAGAA
TACCACATACAGTAGGACATATAAATAG