Ggra4213.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4213.t1
Unique NameGgra4213.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:88900..90264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010552497.1
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K12178
GOsGO:0000338,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008180,GO:0009987,GO:0010389,GO:0010564,GO:0010971,GO:0019538,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751
Evalue6.36e-73
EggNOG OGsKOG1497@1|root,KOG1497@2759|Eukaryota,37IJ1@33090|Viridiplantae,3G7CY@35493|Streptophyta,3HQTN@3699|Brassicales
DescriptionPCI domain
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4213Ggra4213Gracilaria gracilis GNS1m malegenetig00000880_pilon 88900..90264 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4213.t1.stop1Ggra4213.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 88900..88902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4213.t1.CDS1Ggra4213.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 88900..90264 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4213.t1.exon1Ggra4213.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 88900..90264 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4213.t1.start1Ggra4213.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 90262..90264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4213.t1Ggra4213.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 88900..90264 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4213.t1 ID=Ggra4213.t1|Name=Ggra4213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MAQVQHANDCTPHQTSAATPSHATNAAMTPPDLQQAPPTANAANEDMLSP
EDEEKRRLILEQLSALAETPNASAYDPFIRSAINDNDFDRITVLTAFLYQ
NSLPLPTARSVFASMANVILNLPSTSFEQCMNGVLSVRGSVARSFAYEST
LLPLRERLAKEFETRGDFGRALVVLNGVDIEALPSLSESALLRFNLRIAK
LFAAAGDIAGAERCLSRAASQLTNCTDDSLRLQHRAIHARLLDAKGRFVD
ASIKYYSLSQVAEAEQYMDAMSDASPALVSAVTCAILAPAGPRRSRVLAV
LYNDERSRNLELFPLLESIHMGRLLRQDQIERFRPTLQPHQVEALPDGDT
VLDRAVMEHNMLATSRLYQTIGFNELGELLGVSATKAETTAAHMIYEDRM
KATIDQVEGILQFVSTSSSIERWDSYIASLSTAIDDCVEAIINNFPQFAK
HLET*
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spliced messenger RNA

>Ggra4213.t1 ID=Ggra4213.t1|Name=Ggra4213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000880_pilon:88900..90264- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAGGTTCAGCATGCAAACGACTGCACCCCGCATCAAACCTCAGC
AGCCACCCCATCGCATGCCACAAATGCTGCCATGACCCCTCCTGATCTTC
AACAAGCGCCACCCACTGCCAATGCTGCCAACGAGGATATGCTCTCGCCA
GAGGATGAAGAGAAGCGACGTCTTATCTTGGAACAACTCTCCGCGCTCGC
AGAAACTCCGAACGCCTCAGCATATGATCCGTTCATACGCAGTGCCATCA
ATGACAATGACTTCGACCGCATCACCGTGCTTACGGCGTTTTTGTACCAA
AACTCGCTTCCACTTCCCACCGCCCGTTCGGTGTTTGCATCGATGGCCAA
CGTGATTCTAAACCTCCCGTCAACCAGTTTTGAACAATGCATGAACGGTG
TTCTCTCTGTTCGCGGCTCTGTTGCTCGTTCGTTCGCCTACGAATCAACG
TTACTTCCGCTCCGAGAACGTCTTGCAAAGGAGTTTGAAACGCGCGGCGA
CTTTGGTCGTGCTCTTGTTGTTCTCAACGGCGTAGATATCGAAGCGCTTC
CAAGTCTTTCCGAATCTGCCTTGCTTCGATTCAATCTTCGCATTGCAAAA
TTGTTTGCTGCAGCTGGGGATATAGCTGGAGCAGAGCGCTGTTTAAGTCG
TGCTGCTTCACAGCTAACAAATTGTACAGATGATTCGTTGCGGCTTCAAC
ATCGCGCCATTCATGCTCGCTTGCTTGATGCAAAGGGACGCTTTGTCGAT
GCTTCTATCAAGTACTACTCTCTCTCTCAAGTGGCTGAAGCTGAACAGTA
CATGGACGCTATGTCAGACGCATCTCCCGCGTTGGTCAGCGCTGTCACAT
GCGCCATTTTGGCGCCTGCTGGGCCTCGGCGATCGAGGGTGCTTGCAGTT
TTGTACAACGACGAGCGTTCACGTAATTTGGAGTTGTTTCCATTGTTGGA
GAGCATACATATGGGTAGATTGTTGCGGCAGGATCAGATCGAAAGATTTA
GACCTACTTTACAACCACATCAAGTAGAAGCGTTACCAGACGGCGACACG
GTGCTCGATCGCGCAGTGATGGAACATAACATGCTGGCAACGAGTCGGCT
ATATCAAACCATTGGCTTCAACGAGCTTGGGGAGTTGCTTGGAGTGAGTG
CAACCAAAGCCGAAACAACAGCGGCACATATGATTTATGAGGATCGAATG
AAGGCTACAATAGACCAGGTTGAAGGAATACTACAGTTCGTATCTACGTC
AAGTTCAATAGAGCGGTGGGATTCGTACATAGCCTCACTTAGCACAGCGA
TAGATGATTGCGTTGAAGCGATCATTAACAACTTTCCACAATTCGCCAAG
CACTTGGAGACATGA
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protein sequence of Ggra4213.t1

>Ggra4213.t1 ID=Ggra4213.t1|Name=Ggra4213.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MAQVQHANDCTPHQTSAATPSHATNAAMTPPDLQQAPPTANAANEDMLSP
EDEEKRRLILEQLSALAETPNASAYDPFIRSAINDNDFDRITVLTAFLYQ
NSLPLPTARSVFASMANVILNLPSTSFEQCMNGVLSVRGSVARSFAYEST
LLPLRERLAKEFETRGDFGRALVVLNGVDIEALPSLSESALLRFNLRIAK
LFAAAGDIAGAERCLSRAASQLTNCTDDSLRLQHRAIHARLLDAKGRFVD
ASIKYYSLSQVAEAEQYMDAMSDASPALVSAVTCAILAPAGPRRSRVLAV
LYNDERSRNLELFPLLESIHMGRLLRQDQIERFRPTLQPHQVEALPDGDT
VLDRAVMEHNMLATSRLYQTIGFNELGELLGVSATKAETTAAHMIYEDRM
KATIDQVEGILQFVSTSSSIERWDSYIASLSTAIDDCVEAIINNFPQFAK
HLET*
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mRNA from alignment at tig00000880_pilon:88900..90264-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4213.t1 ID=Ggra4213.t1|Name=Ggra4213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000880_pilon:88900..90264- (Gracilaria gracilis GNS1m male)
ATGGCACAGGTTCAGCATGCAAACGACTGCACCCCGCATCAAACCTCAGC
AGCCACCCCATCGCATGCCACAAATGCTGCCATGACCCCTCCTGATCTTC
AACAAGCGCCACCCACTGCCAATGCTGCCAACGAGGATATGCTCTCGCCA
GAGGATGAAGAGAAGCGACGTCTTATCTTGGAACAACTCTCCGCGCTCGC
AGAAACTCCGAACGCCTCAGCATATGATCCGTTCATACGCAGTGCCATCA
ATGACAATGACTTCGACCGCATCACCGTGCTTACGGCGTTTTTGTACCAA
AACTCGCTTCCACTTCCCACCGCCCGTTCGGTGTTTGCATCGATGGCCAA
CGTGATTCTAAACCTCCCGTCAACCAGTTTTGAACAATGCATGAACGGTG
TTCTCTCTGTTCGCGGCTCTGTTGCTCGTTCGTTCGCCTACGAATCAACG
TTACTTCCGCTCCGAGAACGTCTTGCAAAGGAGTTTGAAACGCGCGGCGA
CTTTGGTCGTGCTCTTGTTGTTCTCAACGGCGTAGATATCGAAGCGCTTC
CAAGTCTTTCCGAATCTGCCTTGCTTCGATTCAATCTTCGCATTGCAAAA
TTGTTTGCTGCAGCTGGGGATATAGCTGGAGCAGAGCGCTGTTTAAGTCG
TGCTGCTTCACAGCTAACAAATTGTACAGATGATTCGTTGCGGCTTCAAC
ATCGCGCCATTCATGCTCGCTTGCTTGATGCAAAGGGACGCTTTGTCGAT
GCTTCTATCAAGTACTACTCTCTCTCTCAAGTGGCTGAAGCTGAACAGTA
CATGGACGCTATGTCAGACGCATCTCCCGCGTTGGTCAGCGCTGTCACAT
GCGCCATTTTGGCGCCTGCTGGGCCTCGGCGATCGAGGGTGCTTGCAGTT
TTGTACAACGACGAGCGTTCACGTAATTTGGAGTTGTTTCCATTGTTGGA
GAGCATACATATGGGTAGATTGTTGCGGCAGGATCAGATCGAAAGATTTA
GACCTACTTTACAACCACATCAAGTAGAAGCGTTACCAGACGGCGACACG
GTGCTCGATCGCGCAGTGATGGAACATAACATGCTGGCAACGAGTCGGCT
ATATCAAACCATTGGCTTCAACGAGCTTGGGGAGTTGCTTGGAGTGAGTG
CAACCAAAGCCGAAACAACAGCGGCACATATGATTTATGAGGATCGAATG
AAGGCTACAATAGACCAGGTTGAAGGAATACTACAGTTCGTATCTACGTC
AAGTTCAATAGAGCGGTGGGATTCGTACATAGCCTCACTTAGCACAGCGA
TAGATGATTGCGTTGAAGCGATCATTAACAACTTTCCACAATTCGCCAAG
CACTTGGAGACATGA
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Coding sequence (CDS) from alignment at tig00000880_pilon:88900..90264-

>Ggra4213.t1 ID=Ggra4213.t1|Name=Ggra4213.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000880_pilon:88900..90264- (Gracilaria gracilis GNS1m male)
ATGGCACAGGTTCAGCATGCAAACGACTGCACCCCGCATCAAACCTCAGC
AGCCACCCCATCGCATGCCACAAATGCTGCCATGACCCCTCCTGATCTTC
AACAAGCGCCACCCACTGCCAATGCTGCCAACGAGGATATGCTCTCGCCA
GAGGATGAAGAGAAGCGACGTCTTATCTTGGAACAACTCTCCGCGCTCGC
AGAAACTCCGAACGCCTCAGCATATGATCCGTTCATACGCAGTGCCATCA
ATGACAATGACTTCGACCGCATCACCGTGCTTACGGCGTTTTTGTACCAA
AACTCGCTTCCACTTCCCACCGCCCGTTCGGTGTTTGCATCGATGGCCAA
CGTGATTCTAAACCTCCCGTCAACCAGTTTTGAACAATGCATGAACGGTG
TTCTCTCTGTTCGCGGCTCTGTTGCTCGTTCGTTCGCCTACGAATCAACG
TTACTTCCGCTCCGAGAACGTCTTGCAAAGGAGTTTGAAACGCGCGGCGA
CTTTGGTCGTGCTCTTGTTGTTCTCAACGGCGTAGATATCGAAGCGCTTC
CAAGTCTTTCCGAATCTGCCTTGCTTCGATTCAATCTTCGCATTGCAAAA
TTGTTTGCTGCAGCTGGGGATATAGCTGGAGCAGAGCGCTGTTTAAGTCG
TGCTGCTTCACAGCTAACAAATTGTACAGATGATTCGTTGCGGCTTCAAC
ATCGCGCCATTCATGCTCGCTTGCTTGATGCAAAGGGACGCTTTGTCGAT
GCTTCTATCAAGTACTACTCTCTCTCTCAAGTGGCTGAAGCTGAACAGTA
CATGGACGCTATGTCAGACGCATCTCCCGCGTTGGTCAGCGCTGTCACAT
GCGCCATTTTGGCGCCTGCTGGGCCTCGGCGATCGAGGGTGCTTGCAGTT
TTGTACAACGACGAGCGTTCACGTAATTTGGAGTTGTTTCCATTGTTGGA
GAGCATACATATGGGTAGATTGTTGCGGCAGGATCAGATCGAAAGATTTA
GACCTACTTTACAACCACATCAAGTAGAAGCGTTACCAGACGGCGACACG
GTGCTCGATCGCGCAGTGATGGAACATAACATGCTGGCAACGAGTCGGCT
ATATCAAACCATTGGCTTCAACGAGCTTGGGGAGTTGCTTGGAGTGAGTG
CAACCAAAGCCGAAACAACAGCGGCACATATGATTTATGAGGATCGAATG
AAGGCTACAATAGACCAGGTTGAAGGAATACTACAGTTCGTATCTACGTC
AAGTTCAATAGAGCGGTGGGATTCGTACATAGCCTCACTTAGCACAGCGA
TAGATGATTGCGTTGAAGCGATCATTAACAACTTTCCACAATTCGCCAAG
CACTTGGAGACATGA
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