Ggra4212.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4212.t1
Unique NameGgra4212.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:85556..86413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog358681.BBR47_21130
Preferred nameczcD
PFAMsCation_efflux,ZT_dimer
Max annot lvl91061|Bacilli
KEGG koko:K16264
KEGG TC2.A.4.1
Evalue1.58e-32
EggNOG OGsCOG1230@1|root,COG1230@2|Bacteria,1TR92@1239|Firmicutes,4HBCQ@91061|Bacilli,26QAH@186822|Paenibacillaceae
Descriptioncation diffusion facilitator family transporter
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4212Ggra4212Gracilaria gracilis GNS1m malegenetig00000880_pilon 85556..86413 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4212.t1.stop1Ggra4212.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 85556..85558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4212.t1.CDS1Ggra4212.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 85556..86413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4212.t1.exon1Ggra4212.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 85556..86413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4212.t1.start1Ggra4212.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 86411..86413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4212.t1Ggra4212.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 85556..86413 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4212.t1 ID=Ggra4212.t1|Name=Ggra4212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MVEALHTALDGLTVVISLISVLISRRDPDKRFSYGYARAEVLSALLSVLA
LGLLCLKLFTTGVRRLWLISNGRRIVVHGKYVVIAEGLTLLSNVAMASVL
TRGSSTKSLNLRALRAHVIADCIENVVVLIGGMIMWYFPGAAILDPILTV
VIVILILVMNMSICKETVAALMQAAPSGVVEGIADTVGKLDGVVEVRELH
VWTLTSGFLVGSVVVSTDLETGVKGVKANVKKVFEEFGVENVTVQVDEMS
EVEDRADVEIPAGEHSGFLHGANGYGPVPNDDEVV*
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spliced messenger RNA

>Ggra4212.t1 ID=Ggra4212.t1|Name=Ggra4212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000880_pilon:85556..86413- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAGGCGCTACACACCGCACTAGACGGACTCACCGTGGTAATCTC
GCTCATCTCCGTTCTCATCTCCCGTCGCGACCCCGACAAACGCTTTTCAT
ACGGTTATGCACGCGCCGAAGTACTATCCGCACTTCTCAGTGTTCTGGCA
CTTGGTCTGCTATGCCTCAAGCTTTTCACCACAGGCGTGCGGCGCTTGTG
GCTCATTTCGAACGGCAGGCGAATCGTCGTGCATGGAAAGTACGTCGTGA
TTGCTGAAGGCTTGACGCTTCTTTCGAACGTGGCCATGGCGTCCGTGCTC
ACGCGCGGCTCCAGCACGAAGAGCCTTAACTTGCGCGCACTGCGTGCGCA
CGTGATTGCTGATTGTATTGAGAACGTGGTCGTGTTGATTGGCGGCATGA
TCATGTGGTACTTTCCTGGCGCTGCGATTTTGGACCCCATCCTGACCGTG
GTGATTGTGATTTTGATACTTGTCATGAACATGAGCATATGTAAGGAAAC
GGTAGCTGCATTGATGCAAGCGGCACCGTCGGGCGTTGTAGAGGGGATTG
CGGACACTGTTGGCAAGCTTGATGGCGTAGTCGAAGTGCGTGAATTGCAT
GTGTGGACTCTTACCAGTGGCTTTCTGGTAGGAAGTGTTGTGGTTTCTAC
CGATCTGGAGACAGGTGTGAAAGGAGTGAAAGCGAACGTGAAGAAAGTGT
TCGAGGAGTTTGGAGTGGAGAACGTTACCGTGCAGGTAGACGAGATGAGT
GAGGTGGAAGACAGAGCAGACGTTGAGATACCTGCAGGAGAGCACTCAGG
TTTTTTGCACGGAGCTAACGGATATGGACCTGTTCCTAACGACGATGAAG
TTGTGTGA
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protein sequence of Ggra4212.t1

>Ggra4212.t1 ID=Ggra4212.t1|Name=Ggra4212.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MVEALHTALDGLTVVISLISVLISRRDPDKRFSYGYARAEVLSALLSVLA
LGLLCLKLFTTGVRRLWLISNGRRIVVHGKYVVIAEGLTLLSNVAMASVL
TRGSSTKSLNLRALRAHVIADCIENVVVLIGGMIMWYFPGAAILDPILTV
VIVILILVMNMSICKETVAALMQAAPSGVVEGIADTVGKLDGVVEVRELH
VWTLTSGFLVGSVVVSTDLETGVKGVKANVKKVFEEFGVENVTVQVDEMS
EVEDRADVEIPAGEHSGFLHGANGYGPVPNDDEVV*
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mRNA from alignment at tig00000880_pilon:85556..86413-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4212.t1 ID=Ggra4212.t1|Name=Ggra4212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000880_pilon:85556..86413- (Gracilaria gracilis GNS1m male)
ATGGTTGAGGCGCTACACACCGCACTAGACGGACTCACCGTGGTAATCTC
GCTCATCTCCGTTCTCATCTCCCGTCGCGACCCCGACAAACGCTTTTCAT
ACGGTTATGCACGCGCCGAAGTACTATCCGCACTTCTCAGTGTTCTGGCA
CTTGGTCTGCTATGCCTCAAGCTTTTCACCACAGGCGTGCGGCGCTTGTG
GCTCATTTCGAACGGCAGGCGAATCGTCGTGCATGGAAAGTACGTCGTGA
TTGCTGAAGGCTTGACGCTTCTTTCGAACGTGGCCATGGCGTCCGTGCTC
ACGCGCGGCTCCAGCACGAAGAGCCTTAACTTGCGCGCACTGCGTGCGCA
CGTGATTGCTGATTGTATTGAGAACGTGGTCGTGTTGATTGGCGGCATGA
TCATGTGGTACTTTCCTGGCGCTGCGATTTTGGACCCCATCCTGACCGTG
GTGATTGTGATTTTGATACTTGTCATGAACATGAGCATATGTAAGGAAAC
GGTAGCTGCATTGATGCAAGCGGCACCGTCGGGCGTTGTAGAGGGGATTG
CGGACACTGTTGGCAAGCTTGATGGCGTAGTCGAAGTGCGTGAATTGCAT
GTGTGGACTCTTACCAGTGGCTTTCTGGTAGGAAGTGTTGTGGTTTCTAC
CGATCTGGAGACAGGTGTGAAAGGAGTGAAAGCGAACGTGAAGAAAGTGT
TCGAGGAGTTTGGAGTGGAGAACGTTACCGTGCAGGTAGACGAGATGAGT
GAGGTGGAAGACAGAGCAGACGTTGAGATACCTGCAGGAGAGCACTCAGG
TTTTTTGCACGGAGCTAACGGATATGGACCTGTTCCTAACGACGATGAAG
TTGTGTGA
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Coding sequence (CDS) from alignment at tig00000880_pilon:85556..86413-

>Ggra4212.t1 ID=Ggra4212.t1|Name=Ggra4212.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000880_pilon:85556..86413- (Gracilaria gracilis GNS1m male)
ATGGTTGAGGCGCTACACACCGCACTAGACGGACTCACCGTGGTAATCTC
GCTCATCTCCGTTCTCATCTCCCGTCGCGACCCCGACAAACGCTTTTCAT
ACGGTTATGCACGCGCCGAAGTACTATCCGCACTTCTCAGTGTTCTGGCA
CTTGGTCTGCTATGCCTCAAGCTTTTCACCACAGGCGTGCGGCGCTTGTG
GCTCATTTCGAACGGCAGGCGAATCGTCGTGCATGGAAAGTACGTCGTGA
TTGCTGAAGGCTTGACGCTTCTTTCGAACGTGGCCATGGCGTCCGTGCTC
ACGCGCGGCTCCAGCACGAAGAGCCTTAACTTGCGCGCACTGCGTGCGCA
CGTGATTGCTGATTGTATTGAGAACGTGGTCGTGTTGATTGGCGGCATGA
TCATGTGGTACTTTCCTGGCGCTGCGATTTTGGACCCCATCCTGACCGTG
GTGATTGTGATTTTGATACTTGTCATGAACATGAGCATATGTAAGGAAAC
GGTAGCTGCATTGATGCAAGCGGCACCGTCGGGCGTTGTAGAGGGGATTG
CGGACACTGTTGGCAAGCTTGATGGCGTAGTCGAAGTGCGTGAATTGCAT
GTGTGGACTCTTACCAGTGGCTTTCTGGTAGGAAGTGTTGTGGTTTCTAC
CGATCTGGAGACAGGTGTGAAAGGAGTGAAAGCGAACGTGAAGAAAGTGT
TCGAGGAGTTTGGAGTGGAGAACGTTACCGTGCAGGTAGACGAGATGAGT
GAGGTGGAAGACAGAGCAGACGTTGAGATACCTGCAGGAGAGCACTCAGG
TTTTTTGCACGGAGCTAACGGATATGGACCTGTTCCTAACGACGATGAAG
TTGTGTGA
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