Ggra4205.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4205.t1
Unique NameGgra4205.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:70659..72230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707801.1
PFAMsPolyA_pol,PolyA_pol_RNAbd
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
Evalue7.42e-108
EggNOG OGsCOG0617@1|root,KOG2159@2759|Eukaryota
EC2.7.7.72
DescriptionCTP:tRNA cytidylyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4205Ggra4205Gracilaria gracilis GNS1m malegenetig00000880_pilon 70659..72230 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4205.t1.stop1Ggra4205.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 70659..70661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4205.t1.CDS1Ggra4205.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 70659..72230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4205.t1.exon1Ggra4205.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 70659..72230 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4205.t1.start1Ggra4205.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 72228..72230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4205.t1Ggra4205.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 70659..72230 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4205.t1 ID=Ggra4205.t1|Name=Ggra4205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MSPPDPNASRLKSSPPSQTPLSVSLTPLETKLFDVLLAVARTASPQPTLR
VAGGWVRDKILYPNDTLTNVDIDIALDTMLGIEFAERINNYLDAHHMPHA
TVGLIQKNPDQSKHLETATMRVMDVCLDLVNLRTETYSHDSRIPNIRIGT
PYEDAMRRDLTINALFYNINTRALEDFTHRGLDDIRDRIIRTPLPPLTTL
LDDPLRTLRAIRFASRLNFSFDTSLFEACRESRVHDALGAKVSRERISHE
IDRVVACDNAPHAIGLLMELGLFPVVFRLPRQLDVLDDARPPPDFASVAM
GALLNLHVLKPPDKCAAPRKIVRYAALLSPLANMKCLHTFSKKKPRVIAV
SQYILRHELRLGAKDVSDVSSLHEAALGLQELVHSGAEKLDRLKTGRVIR
SAGPYWRSALQIALVMELRPAKAEDTYAGGMEAPRDKMGNDCRVLVAKYR
EFGEKVEKLGLEGVWDIKPMIDGNRLLKLLPNLKKGPLVSIIMKEQVDWM
IENPDKGMPEITEWISDRYKKYM*
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spliced messenger RNA

>Ggra4205.t1 ID=Ggra4205.t1|Name=Ggra4205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000880_pilon:70659..72230- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCTCCCGACCCGAATGCTTCGCGCTTGAAATCGTCCCCGCCGTC
TCAGACGCCACTATCCGTGTCCCTTACGCCGCTGGAGACGAAGTTATTTG
ATGTCCTGCTTGCTGTGGCGCGAACTGCTTCGCCTCAGCCTACTCTGCGC
GTCGCGGGCGGCTGGGTGCGCGATAAGATTCTGTACCCGAATGATACGCT
TACCAATGTGGATATTGATATCGCCCTCGATACCATGCTCGGCATCGAGT
TTGCGGAGCGTATTAATAACTACCTCGACGCCCATCACATGCCCCACGCT
ACGGTTGGGCTCATTCAGAAGAACCCGGACCAAAGCAAACATCTTGAAAC
AGCCACCATGCGCGTTATGGACGTCTGTTTAGACTTGGTCAATCTTCGAA
CTGAGACATACTCTCACGACTCGCGTATCCCGAACATCAGGATCGGTACT
CCGTACGAAGATGCCATGCGCCGCGATCTCACTATTAACGCTCTCTTTTA
CAACATCAACACTCGCGCTCTCGAAGATTTTACCCATCGCGGCTTGGATG
ACATTCGCGATCGAATCATTCGCACACCGCTTCCCCCTCTAACTACATTA
CTGGACGATCCACTCCGTACCCTGCGCGCTATCCGTTTTGCCTCTCGCCT
GAACTTTAGCTTTGATACGTCATTGTTTGAAGCCTGCCGTGAATCCCGTG
TTCATGACGCGCTGGGCGCCAAAGTGTCACGTGAACGTATCTCGCATGAA
ATCGATCGTGTAGTTGCATGTGACAATGCTCCGCACGCTATAGGACTTCT
GATGGAACTTGGTCTATTCCCGGTCGTATTCCGCCTTCCTCGCCAACTTG
ATGTTCTAGACGACGCTCGCCCACCACCCGACTTCGCGTCCGTAGCGATG
GGCGCGTTGCTCAACCTGCACGTTCTGAAACCGCCTGACAAATGTGCTGC
ACCGAGAAAGATTGTACGTTACGCCGCCTTATTATCACCGCTTGCAAACA
TGAAATGCCTGCACACGTTTTCCAAGAAGAAGCCAAGGGTCATCGCGGTT
AGTCAATATATTCTGCGACATGAGCTCCGCCTTGGGGCTAAGGACGTGTC
GGATGTATCCTCCCTTCATGAGGCTGCGCTTGGTTTGCAAGAACTTGTGC
ACAGCGGCGCGGAAAAGCTGGATAGACTCAAAACCGGGCGTGTAATTCGA
TCTGCCGGTCCCTACTGGCGTAGTGCACTTCAGATAGCTTTGGTCATGGA
ACTACGACCTGCCAAGGCGGAGGACACGTATGCAGGGGGCATGGAAGCAC
CTCGCGATAAGATGGGCAATGATTGTCGTGTGCTGGTCGCGAAATACAGA
GAGTTTGGAGAGAAAGTTGAGAAGTTGGGACTTGAAGGTGTTTGGGATAT
CAAACCGATGATTGATGGAAATCGACTGCTCAAGTTGCTCCCTAATCTAA
AGAAAGGACCACTTGTGAGTATCATTATGAAAGAACAGGTCGACTGGATG
ATTGAGAATCCAGATAAAGGTATGCCGGAAATAACAGAGTGGATATCTGA
CAGGTACAAGAAATACATGTAA
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protein sequence of Ggra4205.t1

>Ggra4205.t1 ID=Ggra4205.t1|Name=Ggra4205.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MSPPDPNASRLKSSPPSQTPLSVSLTPLETKLFDVLLAVARTASPQPTLR
VAGGWVRDKILYPNDTLTNVDIDIALDTMLGIEFAERINNYLDAHHMPHA
TVGLIQKNPDQSKHLETATMRVMDVCLDLVNLRTETYSHDSRIPNIRIGT
PYEDAMRRDLTINALFYNINTRALEDFTHRGLDDIRDRIIRTPLPPLTTL
LDDPLRTLRAIRFASRLNFSFDTSLFEACRESRVHDALGAKVSRERISHE
IDRVVACDNAPHAIGLLMELGLFPVVFRLPRQLDVLDDARPPPDFASVAM
GALLNLHVLKPPDKCAAPRKIVRYAALLSPLANMKCLHTFSKKKPRVIAV
SQYILRHELRLGAKDVSDVSSLHEAALGLQELVHSGAEKLDRLKTGRVIR
SAGPYWRSALQIALVMELRPAKAEDTYAGGMEAPRDKMGNDCRVLVAKYR
EFGEKVEKLGLEGVWDIKPMIDGNRLLKLLPNLKKGPLVSIIMKEQVDWM
IENPDKGMPEITEWISDRYKKYM*
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mRNA from alignment at tig00000880_pilon:70659..72230-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4205.t1 ID=Ggra4205.t1|Name=Ggra4205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000880_pilon:70659..72230- (Gracilaria gracilis GNS1m male)
ATGAGCCCTCCCGACCCGAATGCTTCGCGCTTGAAATCGTCCCCGCCGTC
TCAGACGCCACTATCCGTGTCCCTTACGCCGCTGGAGACGAAGTTATTTG
ATGTCCTGCTTGCTGTGGCGCGAACTGCTTCGCCTCAGCCTACTCTGCGC
GTCGCGGGCGGCTGGGTGCGCGATAAGATTCTGTACCCGAATGATACGCT
TACCAATGTGGATATTGATATCGCCCTCGATACCATGCTCGGCATCGAGT
TTGCGGAGCGTATTAATAACTACCTCGACGCCCATCACATGCCCCACGCT
ACGGTTGGGCTCATTCAGAAGAACCCGGACCAAAGCAAACATCTTGAAAC
AGCCACCATGCGCGTTATGGACGTCTGTTTAGACTTGGTCAATCTTCGAA
CTGAGACATACTCTCACGACTCGCGTATCCCGAACATCAGGATCGGTACT
CCGTACGAAGATGCCATGCGCCGCGATCTCACTATTAACGCTCTCTTTTA
CAACATCAACACTCGCGCTCTCGAAGATTTTACCCATCGCGGCTTGGATG
ACATTCGCGATCGAATCATTCGCACACCGCTTCCCCCTCTAACTACATTA
CTGGACGATCCACTCCGTACCCTGCGCGCTATCCGTTTTGCCTCTCGCCT
GAACTTTAGCTTTGATACGTCATTGTTTGAAGCCTGCCGTGAATCCCGTG
TTCATGACGCGCTGGGCGCCAAAGTGTCACGTGAACGTATCTCGCATGAA
ATCGATCGTGTAGTTGCATGTGACAATGCTCCGCACGCTATAGGACTTCT
GATGGAACTTGGTCTATTCCCGGTCGTATTCCGCCTTCCTCGCCAACTTG
ATGTTCTAGACGACGCTCGCCCACCACCCGACTTCGCGTCCGTAGCGATG
GGCGCGTTGCTCAACCTGCACGTTCTGAAACCGCCTGACAAATGTGCTGC
ACCGAGAAAGATTGTACGTTACGCCGCCTTATTATCACCGCTTGCAAACA
TGAAATGCCTGCACACGTTTTCCAAGAAGAAGCCAAGGGTCATCGCGGTT
AGTCAATATATTCTGCGACATGAGCTCCGCCTTGGGGCTAAGGACGTGTC
GGATGTATCCTCCCTTCATGAGGCTGCGCTTGGTTTGCAAGAACTTGTGC
ACAGCGGCGCGGAAAAGCTGGATAGACTCAAAACCGGGCGTGTAATTCGA
TCTGCCGGTCCCTACTGGCGTAGTGCACTTCAGATAGCTTTGGTCATGGA
ACTACGACCTGCCAAGGCGGAGGACACGTATGCAGGGGGCATGGAAGCAC
CTCGCGATAAGATGGGCAATGATTGTCGTGTGCTGGTCGCGAAATACAGA
GAGTTTGGAGAGAAAGTTGAGAAGTTGGGACTTGAAGGTGTTTGGGATAT
CAAACCGATGATTGATGGAAATCGACTGCTCAAGTTGCTCCCTAATCTAA
AGAAAGGACCACTTGTGAGTATCATTATGAAAGAACAGGTCGACTGGATG
ATTGAGAATCCAGATAAAGGTATGCCGGAAATAACAGAGTGGATATCTGA
CAGGTACAAGAAATACATGTAA
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Coding sequence (CDS) from alignment at tig00000880_pilon:70659..72230-

>Ggra4205.t1 ID=Ggra4205.t1|Name=Ggra4205.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000880_pilon:70659..72230- (Gracilaria gracilis GNS1m male)
ATGAGCCCTCCCGACCCGAATGCTTCGCGCTTGAAATCGTCCCCGCCGTC
TCAGACGCCACTATCCGTGTCCCTTACGCCGCTGGAGACGAAGTTATTTG
ATGTCCTGCTTGCTGTGGCGCGAACTGCTTCGCCTCAGCCTACTCTGCGC
GTCGCGGGCGGCTGGGTGCGCGATAAGATTCTGTACCCGAATGATACGCT
TACCAATGTGGATATTGATATCGCCCTCGATACCATGCTCGGCATCGAGT
TTGCGGAGCGTATTAATAACTACCTCGACGCCCATCACATGCCCCACGCT
ACGGTTGGGCTCATTCAGAAGAACCCGGACCAAAGCAAACATCTTGAAAC
AGCCACCATGCGCGTTATGGACGTCTGTTTAGACTTGGTCAATCTTCGAA
CTGAGACATACTCTCACGACTCGCGTATCCCGAACATCAGGATCGGTACT
CCGTACGAAGATGCCATGCGCCGCGATCTCACTATTAACGCTCTCTTTTA
CAACATCAACACTCGCGCTCTCGAAGATTTTACCCATCGCGGCTTGGATG
ACATTCGCGATCGAATCATTCGCACACCGCTTCCCCCTCTAACTACATTA
CTGGACGATCCACTCCGTACCCTGCGCGCTATCCGTTTTGCCTCTCGCCT
GAACTTTAGCTTTGATACGTCATTGTTTGAAGCCTGCCGTGAATCCCGTG
TTCATGACGCGCTGGGCGCCAAAGTGTCACGTGAACGTATCTCGCATGAA
ATCGATCGTGTAGTTGCATGTGACAATGCTCCGCACGCTATAGGACTTCT
GATGGAACTTGGTCTATTCCCGGTCGTATTCCGCCTTCCTCGCCAACTTG
ATGTTCTAGACGACGCTCGCCCACCACCCGACTTCGCGTCCGTAGCGATG
GGCGCGTTGCTCAACCTGCACGTTCTGAAACCGCCTGACAAATGTGCTGC
ACCGAGAAAGATTGTACGTTACGCCGCCTTATTATCACCGCTTGCAAACA
TGAAATGCCTGCACACGTTTTCCAAGAAGAAGCCAAGGGTCATCGCGGTT
AGTCAATATATTCTGCGACATGAGCTCCGCCTTGGGGCTAAGGACGTGTC
GGATGTATCCTCCCTTCATGAGGCTGCGCTTGGTTTGCAAGAACTTGTGC
ACAGCGGCGCGGAAAAGCTGGATAGACTCAAAACCGGGCGTGTAATTCGA
TCTGCCGGTCCCTACTGGCGTAGTGCACTTCAGATAGCTTTGGTCATGGA
ACTACGACCTGCCAAGGCGGAGGACACGTATGCAGGGGGCATGGAAGCAC
CTCGCGATAAGATGGGCAATGATTGTCGTGTGCTGGTCGCGAAATACAGA
GAGTTTGGAGAGAAAGTTGAGAAGTTGGGACTTGAAGGTGTTTGGGATAT
CAAACCGATGATTGATGGAAATCGACTGCTCAAGTTGCTCCCTAATCTAA
AGAAAGGACCACTTGTGAGTATCATTATGAAAGAACAGGTCGACTGGATG
ATTGAGAATCCAGATAAAGGTATGCCGGAAATAACAGAGTGGATATCTGA
CAGGTACAAGAAATACATGTAA
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