Ggra4201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4201.t1
Unique NameGgra4201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:59646..60647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010539194.1
PFAMsXendoU
Max annot lvl35493|Streptophyta
KEGG koko:K14648
Evalue1.79e-63
EggNOG OGsKOG2849@1|root,KOG2849@2759|Eukaryota,37NFI@33090|Viridiplantae,3GAEP@35493|Streptophyta,3HZHY@3699|Brassicales
DescriptionEndoribonuclease XendoU
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4201Ggra4201Gracilaria gracilis GNS1m malegenetig00000880_pilon 59646..60647 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4201.t1.stop1Ggra4201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 59646..59648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4201.t1.CDS1Ggra4201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 59646..60647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4201.t1.exon1Ggra4201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 59646..60647 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4201.t1.start1Ggra4201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 60645..60647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4201.t1Ggra4201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 59646..60647 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4201.t1 ID=Ggra4201.t1|Name=Ggra4201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MTRYAVADALVRSSQSLSEAISCLWELDTNRLVPGKHYTICLQGETEHRS
EDAARVPLFEYFSDDVWQIESYSLFKRLLDNYTVNQGVPERVSEEEKEEE
ERFLECICDTDCITFVYEWLRENGYKAASSMDEFKQVLSDLWFGMYGRGR
YRDSSAFEHVFCGEISGDDVKGLHNYIQVYIEEQRGNFDYMGYVDFEGDL
CGAPLSNQQALMIRFKWFGCLKNTSSMFVGTSPEFEIALFSLLWFTLGVT
EDVEQEFQLGPYFVELRLYSHRSNMCTAFPCLKGVDTETLEDSQNEAKRR
NEEQYAEHQQEGDQLEQIDAAVLQDSEEFPPLG*
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spliced messenger RNA

>Ggra4201.t1 ID=Ggra4201.t1|Name=Ggra4201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000880_pilon:59646..60647- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGCTATGCCGTTGCGGACGCGCTGGTAAGATCGTCGCAATCTTT
ATCAGAGGCCATCTCGTGCTTGTGGGAACTTGACACCAATAGGTTGGTTC
CCGGCAAACATTATACCATCTGCTTGCAGGGCGAAACCGAGCACCGTTCT
GAGGATGCTGCGCGTGTCCCGCTATTCGAATACTTCTCGGACGATGTCTG
GCAAATAGAGTCTTACAGCCTCTTCAAGCGATTGCTAGATAACTACACAG
TGAATCAGGGTGTCCCGGAACGTGTTTCAGAGGAGGAGAAGGAGGAAGAG
GAGCGATTCTTGGAATGCATCTGTGACACTGATTGCATTACGTTTGTATA
TGAGTGGCTACGAGAGAACGGATACAAAGCCGCCTCCTCTATGGACGAGT
TCAAACAAGTTCTAAGTGATTTGTGGTTTGGCATGTATGGTAGGGGCCGC
TACAGGGATTCTTCCGCGTTTGAGCACGTGTTCTGTGGTGAGATCAGTGG
CGATGATGTCAAAGGTCTCCACAACTACATTCAAGTGTACATTGAAGAGC
AACGTGGAAACTTCGATTACATGGGATATGTCGACTTCGAGGGAGATCTT
TGTGGCGCACCGTTGTCGAACCAGCAGGCTTTGATGATTCGCTTCAAGTG
GTTTGGTTGTCTCAAGAATACTTCTTCTATGTTTGTTGGCACTTCTCCGG
AATTTGAGATTGCCTTGTTTTCTTTGCTTTGGTTCACTCTGGGAGTCACC
GAAGATGTTGAACAAGAATTTCAGCTTGGGCCTTACTTTGTTGAATTAAG
GCTCTATTCTCATCGCTCTAACATGTGCACTGCATTTCCCTGCTTGAAAG
GGGTCGATACAGAGACCTTAGAGGATAGTCAAAATGAAGCAAAGAGAAGG
AATGAGGAGCAATATGCGGAGCACCAACAGGAGGGCGATCAGCTTGAGCA
GATTGACGCCGCAGTTCTGCAGGATTCAGAAGAGTTCCCACCATTGGGAT
AG
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protein sequence of Ggra4201.t1

>Ggra4201.t1 ID=Ggra4201.t1|Name=Ggra4201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MTRYAVADALVRSSQSLSEAISCLWELDTNRLVPGKHYTICLQGETEHRS
EDAARVPLFEYFSDDVWQIESYSLFKRLLDNYTVNQGVPERVSEEEKEEE
ERFLECICDTDCITFVYEWLRENGYKAASSMDEFKQVLSDLWFGMYGRGR
YRDSSAFEHVFCGEISGDDVKGLHNYIQVYIEEQRGNFDYMGYVDFEGDL
CGAPLSNQQALMIRFKWFGCLKNTSSMFVGTSPEFEIALFSLLWFTLGVT
EDVEQEFQLGPYFVELRLYSHRSNMCTAFPCLKGVDTETLEDSQNEAKRR
NEEQYAEHQQEGDQLEQIDAAVLQDSEEFPPLG*
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mRNA from alignment at tig00000880_pilon:59646..60647-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4201.t1 ID=Ggra4201.t1|Name=Ggra4201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000880_pilon:59646..60647- (Gracilaria gracilis GNS1m male)
ATGACTCGCTATGCCGTTGCGGACGCGCTGGTAAGATCGTCGCAATCTTT
ATCAGAGGCCATCTCGTGCTTGTGGGAACTTGACACCAATAGGTTGGTTC
CCGGCAAACATTATACCATCTGCTTGCAGGGCGAAACCGAGCACCGTTCT
GAGGATGCTGCGCGTGTCCCGCTATTCGAATACTTCTCGGACGATGTCTG
GCAAATAGAGTCTTACAGCCTCTTCAAGCGATTGCTAGATAACTACACAG
TGAATCAGGGTGTCCCGGAACGTGTTTCAGAGGAGGAGAAGGAGGAAGAG
GAGCGATTCTTGGAATGCATCTGTGACACTGATTGCATTACGTTTGTATA
TGAGTGGCTACGAGAGAACGGATACAAAGCCGCCTCCTCTATGGACGAGT
TCAAACAAGTTCTAAGTGATTTGTGGTTTGGCATGTATGGTAGGGGCCGC
TACAGGGATTCTTCCGCGTTTGAGCACGTGTTCTGTGGTGAGATCAGTGG
CGATGATGTCAAAGGTCTCCACAACTACATTCAAGTGTACATTGAAGAGC
AACGTGGAAACTTCGATTACATGGGATATGTCGACTTCGAGGGAGATCTT
TGTGGCGCACCGTTGTCGAACCAGCAGGCTTTGATGATTCGCTTCAAGTG
GTTTGGTTGTCTCAAGAATACTTCTTCTATGTTTGTTGGCACTTCTCCGG
AATTTGAGATTGCCTTGTTTTCTTTGCTTTGGTTCACTCTGGGAGTCACC
GAAGATGTTGAACAAGAATTTCAGCTTGGGCCTTACTTTGTTGAATTAAG
GCTCTATTCTCATCGCTCTAACATGTGCACTGCATTTCCCTGCTTGAAAG
GGGTCGATACAGAGACCTTAGAGGATAGTCAAAATGAAGCAAAGAGAAGG
AATGAGGAGCAATATGCGGAGCACCAACAGGAGGGCGATCAGCTTGAGCA
GATTGACGCCGCAGTTCTGCAGGATTCAGAAGAGTTCCCACCATTGGGAT
AG
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Coding sequence (CDS) from alignment at tig00000880_pilon:59646..60647-

>Ggra4201.t1 ID=Ggra4201.t1|Name=Ggra4201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000880_pilon:59646..60647- (Gracilaria gracilis GNS1m male)
ATGACTCGCTATGCCGTTGCGGACGCGCTGGTAAGATCGTCGCAATCTTT
ATCAGAGGCCATCTCGTGCTTGTGGGAACTTGACACCAATAGGTTGGTTC
CCGGCAAACATTATACCATCTGCTTGCAGGGCGAAACCGAGCACCGTTCT
GAGGATGCTGCGCGTGTCCCGCTATTCGAATACTTCTCGGACGATGTCTG
GCAAATAGAGTCTTACAGCCTCTTCAAGCGATTGCTAGATAACTACACAG
TGAATCAGGGTGTCCCGGAACGTGTTTCAGAGGAGGAGAAGGAGGAAGAG
GAGCGATTCTTGGAATGCATCTGTGACACTGATTGCATTACGTTTGTATA
TGAGTGGCTACGAGAGAACGGATACAAAGCCGCCTCCTCTATGGACGAGT
TCAAACAAGTTCTAAGTGATTTGTGGTTTGGCATGTATGGTAGGGGCCGC
TACAGGGATTCTTCCGCGTTTGAGCACGTGTTCTGTGGTGAGATCAGTGG
CGATGATGTCAAAGGTCTCCACAACTACATTCAAGTGTACATTGAAGAGC
AACGTGGAAACTTCGATTACATGGGATATGTCGACTTCGAGGGAGATCTT
TGTGGCGCACCGTTGTCGAACCAGCAGGCTTTGATGATTCGCTTCAAGTG
GTTTGGTTGTCTCAAGAATACTTCTTCTATGTTTGTTGGCACTTCTCCGG
AATTTGAGATTGCCTTGTTTTCTTTGCTTTGGTTCACTCTGGGAGTCACC
GAAGATGTTGAACAAGAATTTCAGCTTGGGCCTTACTTTGTTGAATTAAG
GCTCTATTCTCATCGCTCTAACATGTGCACTGCATTTCCCTGCTTGAAAG
GGGTCGATACAGAGACCTTAGAGGATAGTCAAAATGAAGCAAAGAGAAGG
AATGAGGAGCAATATGCGGAGCACCAACAGGAGGGCGATCAGCTTGAGCA
GATTGACGCCGCAGTTCTGCAGGATTCAGAAGAGTTCCCACCATTGGGAT
AG
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