Ggra4193.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4193.t1
Unique NameGgra4193.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:28485..29246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4193Ggra4193Gracilaria gracilis GNS1m malegenetig00000880_pilon 28485..29246 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4193.t1.stop1Ggra4193.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 28485..28487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4193.t1.CDS1Ggra4193.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 28485..29246 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4193.t1.exon1Ggra4193.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 28485..29246 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4193.t1.start1Ggra4193.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 29244..29246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4193.t1Ggra4193.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 28485..29246 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4193.t1 ID=Ggra4193.t1|Name=Ggra4193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MKLLTMTIPIPSLSLAAADSGLGLLCFTRMYRGQSALSTHNVHVNRENAR
MTSTLQLLPSKAFSFLSALDKPKKLVGVFSRDLEPQSSVGDEVHYSDEGL
QEEMEHLKNMNTHFRRIIVEKSKKLVALKKTTSALEETVAGKDKTIEQLR
AALEDERVVLQQHQAAFSSCERFVTQMRQDHCSQISRCAEEIQLLQAEIE
SAQQNVQAFLRRHPFLEMDIDLALHRERYQTQSLSCSFSPIEGANECYET
QEV*
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spliced messenger RNA

>Ggra4193.t1 ID=Ggra4193.t1|Name=Ggra4193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000880_pilon:28485..29246- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCTTAACCATGACCATCCCGATTCCATCTCTTTCTCTTGCTGC
GGCTGATTCGGGACTCGGATTGTTGTGTTTTACCCGAATGTATCGTGGTC
AATCCGCCCTCAGTACGCACAACGTTCATGTGAATCGCGAGAATGCCAGG
ATGACTTCCACTCTCCAACTCCTTCCGAGTAAAGCGTTTTCCTTTCTGTC
CGCATTGGACAAACCCAAGAAGTTGGTTGGTGTGTTTTCTCGCGACTTGG
AACCACAGTCATCGGTGGGAGATGAAGTCCACTACTCTGACGAGGGACTT
CAAGAAGAGATGGAACACTTGAAGAACATGAACACCCATTTTCGGAGAAT
TATAGTGGAAAAGAGCAAAAAACTTGTAGCCCTAAAGAAAACTACAAGTG
CGCTTGAGGAGACCGTTGCAGGTAAGGACAAAACAATTGAACAGCTGCGA
GCAGCGCTGGAGGACGAACGTGTTGTCTTACAGCAGCATCAAGCTGCCTT
TTCTTCATGCGAACGGTTCGTTACGCAAATGAGACAGGACCATTGTTCTC
AAATCAGTCGGTGCGCTGAAGAAATTCAGTTGCTTCAAGCCGAGATCGAG
AGTGCTCAGCAGAATGTGCAAGCTTTTCTACGCAGGCATCCGTTCCTGGA
GATGGACATCGACCTAGCCCTTCACAGGGAGCGTTATCAGACGCAGTCTT
TGTCTTGTTCTTTCTCGCCTATCGAAGGTGCCAACGAGTGTTATGAAACC
CAAGAAGTTTGA
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protein sequence of Ggra4193.t1

>Ggra4193.t1 ID=Ggra4193.t1|Name=Ggra4193.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MKLLTMTIPIPSLSLAAADSGLGLLCFTRMYRGQSALSTHNVHVNRENAR
MTSTLQLLPSKAFSFLSALDKPKKLVGVFSRDLEPQSSVGDEVHYSDEGL
QEEMEHLKNMNTHFRRIIVEKSKKLVALKKTTSALEETVAGKDKTIEQLR
AALEDERVVLQQHQAAFSSCERFVTQMRQDHCSQISRCAEEIQLLQAEIE
SAQQNVQAFLRRHPFLEMDIDLALHRERYQTQSLSCSFSPIEGANECYET
QEV*
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mRNA from alignment at tig00000880_pilon:28485..29246-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4193.t1 ID=Ggra4193.t1|Name=Ggra4193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000880_pilon:28485..29246- (Gracilaria gracilis GNS1m male)
ATGAAGCTCTTAACCATGACCATCCCGATTCCATCTCTTTCTCTTGCTGC
GGCTGATTCGGGACTCGGATTGTTGTGTTTTACCCGAATGTATCGTGGTC
AATCCGCCCTCAGTACGCACAACGTTCATGTGAATCGCGAGAATGCCAGG
ATGACTTCCACTCTCCAACTCCTTCCGAGTAAAGCGTTTTCCTTTCTGTC
CGCATTGGACAAACCCAAGAAGTTGGTTGGTGTGTTTTCTCGCGACTTGG
AACCACAGTCATCGGTGGGAGATGAAGTCCACTACTCTGACGAGGGACTT
CAAGAAGAGATGGAACACTTGAAGAACATGAACACCCATTTTCGGAGAAT
TATAGTGGAAAAGAGCAAAAAACTTGTAGCCCTAAAGAAAACTACAAGTG
CGCTTGAGGAGACCGTTGCAGGTAAGGACAAAACAATTGAACAGCTGCGA
GCAGCGCTGGAGGACGAACGTGTTGTCTTACAGCAGCATCAAGCTGCCTT
TTCTTCATGCGAACGGTTCGTTACGCAAATGAGACAGGACCATTGTTCTC
AAATCAGTCGGTGCGCTGAAGAAATTCAGTTGCTTCAAGCCGAGATCGAG
AGTGCTCAGCAGAATGTGCAAGCTTTTCTACGCAGGCATCCGTTCCTGGA
GATGGACATCGACCTAGCCCTTCACAGGGAGCGTTATCAGACGCAGTCTT
TGTCTTGTTCTTTCTCGCCTATCGAAGGTGCCAACGAGTGTTATGAAACC
CAAGAAGTTTGA
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Coding sequence (CDS) from alignment at tig00000880_pilon:28485..29246-

>Ggra4193.t1 ID=Ggra4193.t1|Name=Ggra4193.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000880_pilon:28485..29246- (Gracilaria gracilis GNS1m male)
ATGAAGCTCTTAACCATGACCATCCCGATTCCATCTCTTTCTCTTGCTGC
GGCTGATTCGGGACTCGGATTGTTGTGTTTTACCCGAATGTATCGTGGTC
AATCCGCCCTCAGTACGCACAACGTTCATGTGAATCGCGAGAATGCCAGG
ATGACTTCCACTCTCCAACTCCTTCCGAGTAAAGCGTTTTCCTTTCTGTC
CGCATTGGACAAACCCAAGAAGTTGGTTGGTGTGTTTTCTCGCGACTTGG
AACCACAGTCATCGGTGGGAGATGAAGTCCACTACTCTGACGAGGGACTT
CAAGAAGAGATGGAACACTTGAAGAACATGAACACCCATTTTCGGAGAAT
TATAGTGGAAAAGAGCAAAAAACTTGTAGCCCTAAAGAAAACTACAAGTG
CGCTTGAGGAGACCGTTGCAGGTAAGGACAAAACAATTGAACAGCTGCGA
GCAGCGCTGGAGGACGAACGTGTTGTCTTACAGCAGCATCAAGCTGCCTT
TTCTTCATGCGAACGGTTCGTTACGCAAATGAGACAGGACCATTGTTCTC
AAATCAGTCGGTGCGCTGAAGAAATTCAGTTGCTTCAAGCCGAGATCGAG
AGTGCTCAGCAGAATGTGCAAGCTTTTCTACGCAGGCATCCGTTCCTGGA
GATGGACATCGACCTAGCCCTTCACAGGGAGCGTTATCAGACGCAGTCTT
TGTCTTGTTCTTTCTCGCCTATCGAAGGTGCCAACGAGTGTTATGAAACC
CAAGAAGTTTGA
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