Ggra4190.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4190.t1
Unique NameGgra4190.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:762785..763809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1280949.HAD_07570
Preferred nameubiG
PFAMsMethyltransf_11,Methyltransf_23
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568
KEGG ReactionR04988,R05614,R08769,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117
Evalue1.25e-71
EggNOG OGsCOG2227@1|root,COG2227@2|Bacteria,1MU89@1224|Proteobacteria,2TRIK@28211|Alphaproteobacteria,43WZN@69657|Hyphomonadaceae
EC2.1.1.222,2.1.1.64
DescriptionO-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4190Ggra4190Gracilaria gracilis GNS1m malegenetig00000853_pilon 762785..763809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4190.t1Ggra4190.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 762785..763809 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4190.t1.start1Ggra4190.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 762785..762787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4190.t1.CDS1Ggra4190.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 762785..763127 +
Ggra4190.t1.CDS2Ggra4190.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 763199..763809 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4190.t1.exon1Ggra4190.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 762785..763127 +
Ggra4190.t1.exon2Ggra4190.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 763199..763809 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4190.t1.intron1Ggra4190.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 763128..763198 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4190.t1.stop1Ggra4190.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 763807..763809 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4190.t1 ID=Ggra4190.t1|Name=Ggra4190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MWRSRVQITSRSFVNQRNLTRYRLIGSRPLCTSAKSSKSTVDPKEIKKFS
AQASKWWDPKGSAAPLHRLNPTRIAYIRSIIERTLGPTSPPPEALHGLPL
KPLSGIEVIDVGCGGGLVSEPMARLGAKVLGIDKSREGIFVARQHAAKDP
EISSTDILRYREAAVEDVLNAGESFDVVLALEIIEHVAEPAKFLKHCASL
VREGGVLILSTLNRTLTSYALGIVAVERVLGWLPTGTHDWTRFPTPKEVA
DVIKNETELVPEEVVGVAYSPFSRTFSVVDDLSVNYIFTATRPTITSPDS
SKDSSKTSQPSETPETG*
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spliced messenger RNA

>Ggra4190.t1 ID=Ggra4190.t1|Name=Ggra4190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000853_pilon:762785..763809+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGGTCCAGGGTTCAGATAACATCCCGGAGCTTCGTGAACCAGCG
AAACCTAACCAGGTACCGGTTAATTGGTTCGCGCCCATTGTGCACATCTG
CAAAATCATCGAAGTCAACTGTCGACCCGAAGGAAATCAAGAAGTTCTCG
GCTCAAGCAAGCAAATGGTGGGATCCTAAGGGATCAGCTGCTCCATTGCA
CAGGCTCAACCCCACAAGAATTGCGTACATCAGATCCATCATAGAACGTA
CTTTAGGTCCGACGAGTCCTCCACCAGAAGCCTTGCATGGATTACCACTT
AAGCCACTGTCTGGAATTGAGGTTATTGATGTTGGTTGTGGAGGCGGTCT
TGTTTCTGAGCCAATGGCTCGGTTAGGAGCAAAAGTACTTGGTATAGACA
AATCTCGAGAAGGAATTTTCGTTGCAAGACAGCACGCCGCGAAAGATCCC
GAGATTTCTTCAACAGATATACTTCGCTACCGAGAAGCAGCTGTCGAGGA
TGTCTTGAACGCAGGAGAGAGCTTTGACGTCGTACTGGCATTGGAGATCA
TCGAGCACGTGGCAGAGCCTGCAAAGTTCCTGAAGCATTGCGCTTCTCTT
GTTCGAGAGGGCGGGGTTCTCATTCTGTCCACTCTAAACCGCACACTAAC
GTCCTATGCATTAGGTATTGTTGCAGTGGAACGTGTACTGGGCTGGCTTC
CCACCGGAACTCATGACTGGACCAGATTCCCGACGCCAAAGGAAGTTGCG
GACGTCATAAAGAATGAAACGGAACTTGTACCAGAGGAGGTTGTCGGAGT
TGCGTACAGCCCGTTCAGTCGGACGTTTTCTGTGGTTGACGACTTGAGCG
TGAACTATATATTTACTGCAACTCGGCCTACAATAACATCCCCGGACTCA
TCCAAGGACTCCTCGAAGACGTCCCAACCGTCGGAGACCCCTGAGACGGG
ATAA
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protein sequence of Ggra4190.t1

>Ggra4190.t1 ID=Ggra4190.t1|Name=Ggra4190.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MWRSRVQITSRSFVNQRNLTRYRLIGSRPLCTSAKSSKSTVDPKEIKKFS
AQASKWWDPKGSAAPLHRLNPTRIAYIRSIIERTLGPTSPPPEALHGLPL
KPLSGIEVIDVGCGGGLVSEPMARLGAKVLGIDKSREGIFVARQHAAKDP
EISSTDILRYREAAVEDVLNAGESFDVVLALEIIEHVAEPAKFLKHCASL
VREGGVLILSTLNRTLTSYALGIVAVERVLGWLPTGTHDWTRFPTPKEVA
DVIKNETELVPEEVVGVAYSPFSRTFSVVDDLSVNYIFTATRPTITSPDS
SKDSSKTSQPSETPETG*
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mRNA from alignment at tig00000853_pilon:762785..763809+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4190.t1 ID=Ggra4190.t1|Name=Ggra4190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1025bp|location=Sequence derived from alignment at tig00000853_pilon:762785..763809+ (Gracilaria gracilis GNS1m male)
ATGTGGAGGTCCAGGGTTCAGATAACATCCCGGAGCTTCGTGAACCAGCG
AAACCTAACCAGGTACCGGTTAATTGGTTCGCGCCCATTGTGCACATCTG
CAAAATCATCGAAGTCAACTGTCGACCCGAAGGAAATCAAGAAGTTCTCG
GCTCAAGCAAGCAAATGGTGGGATCCTAAGGGATCAGCTGCTCCATTGCA
CAGGCTCAACCCCACAAGAATTGCGTACATCAGATCCATCATAGAACGTA
CTTTAGGTCCGACGAGTCCTCCACCAGAAGCCTTGCATGGATTACCACTT
AAGCCACTGTCTGGAATTGAGGTTATTGATGTTGGTTGTGGAGGTACGTT
ATCCGGCTACGGGATTAGGCCCTCTTCGTGATCAACATCTAACATTTTCT
TTATGTTTCATTAGGCGGTCTTGTTTCTGAGCCAATGGCTCGGTTAGGAG
CAAAAGTACTTGGTATAGACAAATCTCGAGAAGGAATTTTCGTTGCAAGA
CAGCACGCCGCGAAAGATCCCGAGATTTCTTCAACAGATATACTTCGCTA
CCGAGAAGCAGCTGTCGAGGATGTCTTGAACGCAGGAGAGAGCTTTGACG
TCGTACTGGCATTGGAGATCATCGAGCACGTGGCAGAGCCTGCAAAGTTC
CTGAAGCATTGCGCTTCTCTTGTTCGAGAGGGCGGGGTTCTCATTCTGTC
CACTCTAAACCGCACACTAACGTCCTATGCATTAGGTATTGTTGCAGTGG
AACGTGTACTGGGCTGGCTTCCCACCGGAACTCATGACTGGACCAGATTC
CCGACGCCAAAGGAAGTTGCGGACGTCATAAAGAATGAAACGGAACTTGT
ACCAGAGGAGGTTGTCGGAGTTGCGTACAGCCCGTTCAGTCGGACGTTTT
CTGTGGTTGACGACTTGAGCGTGAACTATATATTTACTGCAACTCGGCCT
ACAATAACATCCCCGGACTCATCCAAGGACTCCTCGAAGACGTCCCAACC
GTCGGAGACCCCTGAGACGGGATAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:762785..763809+

>Ggra4190.t1 ID=Ggra4190.t1|Name=Ggra4190.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000853_pilon:762785..763809+ (Gracilaria gracilis GNS1m male)
ATGTGGAGGTCCAGGGTTCAGATAACATCCCGGAGCTTCGTGAACCAGCG
AAACCTAACCAGGTACCGGTTAATTGGTTCGCGCCCATTGTGCACATCTG
CAAAATCATCGAAGTCAACTGTCGACCCGAAGGAAATCAAGAAGTTCTCG
GCTCAAGCAAGCAAATGGTGGGATCCTAAGGGATCAGCTGCTCCATTGCA
CAGGCTCAACCCCACAAGAATTGCGTACATCAGATCCATCATAGAACGTA
CTTTAGGTCCGACGAGTCCTCCACCAGAAGCCTTGCATGGATTACCACTT
AAGCCACTGTCTGGAATTGAGGTTATTGATGTTGGTTGTGGAGGCGGTCT
TGTTTCTGAGCCAATGGCTCGGTTAGGAGCAAAAGTACTTGGTATAGACA
AATCTCGAGAAGGAATTTTCGTTGCAAGACAGCACGCCGCGAAAGATCCC
GAGATTTCTTCAACAGATATACTTCGCTACCGAGAAGCAGCTGTCGAGGA
TGTCTTGAACGCAGGAGAGAGCTTTGACGTCGTACTGGCATTGGAGATCA
TCGAGCACGTGGCAGAGCCTGCAAAGTTCCTGAAGCATTGCGCTTCTCTT
GTTCGAGAGGGCGGGGTTCTCATTCTGTCCACTCTAAACCGCACACTAAC
GTCCTATGCATTAGGTATTGTTGCAGTGGAACGTGTACTGGGCTGGCTTC
CCACCGGAACTCATGACTGGACCAGATTCCCGACGCCAAAGGAAGTTGCG
GACGTCATAAAGAATGAAACGGAACTTGTACCAGAGGAGGTTGTCGGAGT
TGCGTACAGCCCGTTCAGTCGGACGTTTTCTGTGGTTGACGACTTGAGCG
TGAACTATATATTTACTGCAACTCGGCCTACAATAACATCCCCGGACTCA
TCCAAGGACTCCTCGAAGACGTCCCAACCGTCGGAGACCCCTGAGACGGG
ATAA
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