Ggra419.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra419.t1
Unique NameGgra419.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000928_piloncontigtig00000928_pilon:146711..148102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMV013CT
Preferred namerbcL
PFAMsRuBisCO_large,RuBisCO_large_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00172,RC00253,RC00367,RC00859
KEGG koko:K01601,ko:K01963
KEGG ReactionR00024,R00742,R03140,R04386
KEGG Pathwayko00061,ko00620,ko00630,ko00640,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00630,map00640,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00165,M00166,M00376,M00532
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.47e-302
EggNOG OGsCOG1850@1|root,2QTI9@2759|Eukaryota
EC2.1.3.15,4.1.1.39,6.4.1.2
Descriptionribulose-bisphosphate carboxylase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra419Ggra419Gracilaria gracilis GNS1m malegenetig00000928_pilon 146711..148102 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra419.t1.start1Ggra419.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000928_pilon 146711..146713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra419.t1.CDS1Ggra419.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000928_pilon 146711..148102 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra419.t1.exon1Ggra419.t1.exon1Gracilaria gracilis GNS1m maleexontig00000928_pilon 146711..148102 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra419.t1.stop1Ggra419.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000928_pilon 148100..148102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra419.t1Ggra419.t1Gracilaria gracilis GNS1m malepolypeptidetig00000928_pilon 146711..148102 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra419.t1 ID=Ggra419.t1|Name=Ggra419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp
MGYWDPDYVVKDTDVLALFRVTPQPGVDPVEASAAVAGESSTATWTVVWT
DLLTACDLYRAKAYKVDAVPNAPDQYFAFISYDIDLFEEGSIANLTASII
GNVFGFKAVKALRLEDMRIPVAYLKTFQGPATGLVVERERMDKFGRPFLG
ATVKPKLGLSGKNYGRVVYEGLKGGLDFLKDDENINSQPFMRWKERFLYS
MEGVNRAIAASGEVKGHYMNVTAATMEDMYERAEFAKQLGSVIIMIDLVI
GYTAIQTMAIWARKNDMILHLHRAGNSTYSRQKSHGMNFRVICKWMRMSG
VDHIHAGTVVGKLEGDPLMIRGFYNTLLQTHLKVNLPQGIFFEQDWASLR
KVTPVASGGIHCGQMHQLLDYLGNDVVLQFGGGTIGHPDGIQAGATANRV
ALESMVLARNESRDYVAEGPQILRDAAKTCGPLQTALDLWKDITFNYTST
DTADFVETPTANV*
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spliced messenger RNA

>Ggra419.t1 ID=Ggra419.t1|Name=Ggra419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000928_pilon:146711..148102+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATATTGGGATCCTGACTATGTGGTTAAGGATACAGACGTACTAGC
TTTATTTCGTGTTACTCCACAACCAGGAGTTGATCCAGTAGAAGCTTCTG
CTGCGGTTGCAGGAGAATCATCTACAGCTACTTGGACTGTTGTGTGGACA
GATTTATTAACAGCTTGTGATTTATATAGAGCAAAAGCATATAAAGTAGA
TGCTGTTCCAAATGCTCCAGATCAATATTTTGCTTTTATCTCATATGACA
TAGACTTATTTGAGGAAGGTTCTATTGCTAATTTAACAGCTTCAATTATT
GGTAATGTATTTGGTTTTAAAGCAGTAAAAGCTCTACGACTAGAAGACAT
GCGTATACCTGTTGCTTACTTAAAAACTTTCCAAGGTCCTGCTACTGGAT
TAGTAGTAGAACGTGAACGTATGGATAAATTTGGTCGTCCGTTTTTAGGT
GCAACAGTTAAGCCTAAATTAGGTCTTTCTGGTAAAAACTATGGTAGAGT
TGTATACGAAGGTCTTAAAGGTGGTTTAGATTTCTTAAAAGACGATGAAA
ATATTAACTCTCAACCTTTCATGCGTTGGAAAGAAAGATTTTTATACTCA
ATGGAAGGCGTAAATAGAGCAATTGCAGCAAGTGGTGAAGTTAAAGGACA
TTACATGAATGTCACAGCTGCTACAATGGAAGATATGTATGAAAGAGCTG
AGTTTGCTAAACAATTAGGAAGTGTCATCATTATGATTGACCTTGTTATT
GGTTATACAGCAATTCAAACTATGGCTATATGGGCACGCAAGAATGATAT
GATTTTACATTTACACCGTGCTGGTAACTCAACATATTCTCGTCAAAAAA
GCCATGGCATGAATTTCCGTGTTATTTGTAAGTGGATGCGTATGTCTGGC
GTAGACCATATTCACGCAGGTACTGTAGTTGGTAAACTTGAAGGTGACCC
ATTAATGATTAGAGGTTTCTATAATACTTTATTACAAACTCATTTAAAAG
TTAATCTACCTCAAGGTATATTCTTTGAACAAGACTGGGCTTCTTTACGT
AAAGTTACACCTGTTGCTTCAGGTGGTATTCATTGTGGACAGATGCATCA
GTTATTAGATTACTTAGGTAATGATGTAGTACTTCAATTTGGAGGAGGAA
CAATTGGGCATCCAGATGGTATACAAGCTGGAGCAACAGCTAATCGTGTG
GCTTTAGAATCTATGGTTTTAGCTCGTAATGAAAGTCGTGACTATGTTGC
AGAAGGACCACAAATTTTACGTGATGCTGCTAAGACATGTGGACCTTTAC
AAACAGCTTTAGATTTATGGAAAGATATTACTTTTAATTATACTTCTACA
GATACAGCTGATTTTGTTGAAACTCCAACAGCTAATGTATAG
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protein sequence of Ggra419.t1

>Ggra419.t1 ID=Ggra419.t1|Name=Ggra419.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MGYWDPDYVVKDTDVLALFRVTPQPGVDPVEASAAVAGESSTATWTVVWT
DLLTACDLYRAKAYKVDAVPNAPDQYFAFISYDIDLFEEGSIANLTASII
GNVFGFKAVKALRLEDMRIPVAYLKTFQGPATGLVVERERMDKFGRPFLG
ATVKPKLGLSGKNYGRVVYEGLKGGLDFLKDDENINSQPFMRWKERFLYS
MEGVNRAIAASGEVKGHYMNVTAATMEDMYERAEFAKQLGSVIIMIDLVI
GYTAIQTMAIWARKNDMILHLHRAGNSTYSRQKSHGMNFRVICKWMRMSG
VDHIHAGTVVGKLEGDPLMIRGFYNTLLQTHLKVNLPQGIFFEQDWASLR
KVTPVASGGIHCGQMHQLLDYLGNDVVLQFGGGTIGHPDGIQAGATANRV
ALESMVLARNESRDYVAEGPQILRDAAKTCGPLQTALDLWKDITFNYTST
DTADFVETPTANV*
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mRNA from alignment at tig00000928_pilon:146711..148102+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra419.t1 ID=Ggra419.t1|Name=Ggra419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000928_pilon:146711..148102+ (Gracilaria gracilis GNS1m male)
ATGGGATATTGGGATCCTGACTATGTGGTTAAGGATACAGACGTACTAGC
TTTATTTCGTGTTACTCCACAACCAGGAGTTGATCCAGTAGAAGCTTCTG
CTGCGGTTGCAGGAGAATCATCTACAGCTACTTGGACTGTTGTGTGGACA
GATTTATTAACAGCTTGTGATTTATATAGAGCAAAAGCATATAAAGTAGA
TGCTGTTCCAAATGCTCCAGATCAATATTTTGCTTTTATCTCATATGACA
TAGACTTATTTGAGGAAGGTTCTATTGCTAATTTAACAGCTTCAATTATT
GGTAATGTATTTGGTTTTAAAGCAGTAAAAGCTCTACGACTAGAAGACAT
GCGTATACCTGTTGCTTACTTAAAAACTTTCCAAGGTCCTGCTACTGGAT
TAGTAGTAGAACGTGAACGTATGGATAAATTTGGTCGTCCGTTTTTAGGT
GCAACAGTTAAGCCTAAATTAGGTCTTTCTGGTAAAAACTATGGTAGAGT
TGTATACGAAGGTCTTAAAGGTGGTTTAGATTTCTTAAAAGACGATGAAA
ATATTAACTCTCAACCTTTCATGCGTTGGAAAGAAAGATTTTTATACTCA
ATGGAAGGCGTAAATAGAGCAATTGCAGCAAGTGGTGAAGTTAAAGGACA
TTACATGAATGTCACAGCTGCTACAATGGAAGATATGTATGAAAGAGCTG
AGTTTGCTAAACAATTAGGAAGTGTCATCATTATGATTGACCTTGTTATT
GGTTATACAGCAATTCAAACTATGGCTATATGGGCACGCAAGAATGATAT
GATTTTACATTTACACCGTGCTGGTAACTCAACATATTCTCGTCAAAAAA
GCCATGGCATGAATTTCCGTGTTATTTGTAAGTGGATGCGTATGTCTGGC
GTAGACCATATTCACGCAGGTACTGTAGTTGGTAAACTTGAAGGTGACCC
ATTAATGATTAGAGGTTTCTATAATACTTTATTACAAACTCATTTAAAAG
TTAATCTACCTCAAGGTATATTCTTTGAACAAGACTGGGCTTCTTTACGT
AAAGTTACACCTGTTGCTTCAGGTGGTATTCATTGTGGACAGATGCATCA
GTTATTAGATTACTTAGGTAATGATGTAGTACTTCAATTTGGAGGAGGAA
CAATTGGGCATCCAGATGGTATACAAGCTGGAGCAACAGCTAATCGTGTG
GCTTTAGAATCTATGGTTTTAGCTCGTAATGAAAGTCGTGACTATGTTGC
AGAAGGACCACAAATTTTACGTGATGCTGCTAAGACATGTGGACCTTTAC
AAACAGCTTTAGATTTATGGAAAGATATTACTTTTAATTATACTTCTACA
GATACAGCTGATTTTGTTGAAACTCCAACAGCTAATGTATAG
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Coding sequence (CDS) from alignment at tig00000928_pilon:146711..148102+

>Ggra419.t1 ID=Ggra419.t1|Name=Ggra419.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000928_pilon:146711..148102+ (Gracilaria gracilis GNS1m male)
ATGGGATATTGGGATCCTGACTATGTGGTTAAGGATACAGACGTACTAGC
TTTATTTCGTGTTACTCCACAACCAGGAGTTGATCCAGTAGAAGCTTCTG
CTGCGGTTGCAGGAGAATCATCTACAGCTACTTGGACTGTTGTGTGGACA
GATTTATTAACAGCTTGTGATTTATATAGAGCAAAAGCATATAAAGTAGA
TGCTGTTCCAAATGCTCCAGATCAATATTTTGCTTTTATCTCATATGACA
TAGACTTATTTGAGGAAGGTTCTATTGCTAATTTAACAGCTTCAATTATT
GGTAATGTATTTGGTTTTAAAGCAGTAAAAGCTCTACGACTAGAAGACAT
GCGTATACCTGTTGCTTACTTAAAAACTTTCCAAGGTCCTGCTACTGGAT
TAGTAGTAGAACGTGAACGTATGGATAAATTTGGTCGTCCGTTTTTAGGT
GCAACAGTTAAGCCTAAATTAGGTCTTTCTGGTAAAAACTATGGTAGAGT
TGTATACGAAGGTCTTAAAGGTGGTTTAGATTTCTTAAAAGACGATGAAA
ATATTAACTCTCAACCTTTCATGCGTTGGAAAGAAAGATTTTTATACTCA
ATGGAAGGCGTAAATAGAGCAATTGCAGCAAGTGGTGAAGTTAAAGGACA
TTACATGAATGTCACAGCTGCTACAATGGAAGATATGTATGAAAGAGCTG
AGTTTGCTAAACAATTAGGAAGTGTCATCATTATGATTGACCTTGTTATT
GGTTATACAGCAATTCAAACTATGGCTATATGGGCACGCAAGAATGATAT
GATTTTACATTTACACCGTGCTGGTAACTCAACATATTCTCGTCAAAAAA
GCCATGGCATGAATTTCCGTGTTATTTGTAAGTGGATGCGTATGTCTGGC
GTAGACCATATTCACGCAGGTACTGTAGTTGGTAAACTTGAAGGTGACCC
ATTAATGATTAGAGGTTTCTATAATACTTTATTACAAACTCATTTAAAAG
TTAATCTACCTCAAGGTATATTCTTTGAACAAGACTGGGCTTCTTTACGT
AAAGTTACACCTGTTGCTTCAGGTGGTATTCATTGTGGACAGATGCATCA
GTTATTAGATTACTTAGGTAATGATGTAGTACTTCAATTTGGAGGAGGAA
CAATTGGGCATCCAGATGGTATACAAGCTGGAGCAACAGCTAATCGTGTG
GCTTTAGAATCTATGGTTTTAGCTCGTAATGAAAGTCGTGACTATGTTGC
AGAAGGACCACAAATTTTACGTGATGCTGCTAAGACATGTGGACCTTTAC
AAACAGCTTTAGATTTATGGAAAGATATTACTTTTAATTATACTTCTACA
GATACAGCTGATTTTGTTGAAACTCCAACAGCTAATGTATAG
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