Ggra4187.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4187.t1
Unique NameGgra4187.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:755184..756856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1041139.KB902683_gene2765
PFAMsFMO-like,Pyr_redox_3
Max annot lvl28211|Alphaproteobacteria
Evalue3.29e-45
EggNOG OGsCOG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TTY2@28211|Alphaproteobacteria,4BM7S@82115|Rhizobiaceae
DescriptionFlavin-binding monooxygenase-like
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4187Ggra4187Gracilaria gracilis GNS1m malegenetig00000853_pilon 755184..756856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4187.t1Ggra4187.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 755184..756856 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4187.t1.start1Ggra4187.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 755184..755186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4187.t1.CDS1Ggra4187.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 755184..755615 +
Ggra4187.t1.CDS2Ggra4187.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 755696..756856 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4187.t1.exon1Ggra4187.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 755184..755615 +
Ggra4187.t1.exon2Ggra4187.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 755696..756856 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4187.t1.intron1Ggra4187.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 755616..755695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4187.t1.stop1Ggra4187.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 756854..756856 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4187.t1 ID=Ggra4187.t1|Name=Ggra4187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp
MQEQNPLQQPPATRIGIIGGGIAGICAARACILRGLNVTVFDMRSELGGI
WSSENSPIFDALTTNTATFETCTSDISPPRVFSSPSLSKYDDLCFTREEM
VDYIQIVIKNTPGLFECAMLNTEVISVKQKPSKVYDIIFQTDGALPGIEV
YKDKIMHVQKYKNPLQLKGKRVLVVGGSVSGCEAAGDMLCFEASEGPASV
TLNTRTMRFLLLKQHEGEVLMSKVCTRFHRLRDLAGRLGNEHYAKNMHTF
IPQFLSNSDFPAPEPTGPIKVPFVPAWAPVNGKLYQACQQNKLEWKISPL
ECITESGARFKDGTAGDYDVIVFSSGYKLSLPFLEEDVQRAIFADGVNLL
DLYDNTFHPDVANMAFVGMYPPGSAYTPMVDNQSRWVARVFSGDTPLPSY
ERMKKGVQQYKQTRSSPNSRFLVTGYDILDVFAKHGGFEVDLAKYPELSK
ALLLGPLVPAQFRLFGEQHSESAMEDTIRQFEAGGFKVGDNVVSMETYEE
LNTVCQILQEQGNCPPSLPAAIRNLVVSDR*
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spliced messenger RNA

>Ggra4187.t1 ID=Ggra4187.t1|Name=Ggra4187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00000853_pilon:755184..756856+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAACAAAATCCGCTTCAGCAACCACCCGCTACTAGAATTGGCAT
AATAGGCGGAGGAATCGCCGGAATATGCGCAGCACGAGCATGCATTCTCC
GCGGTCTTAATGTCACAGTATTCGACATGCGTTCTGAGCTGGGTGGCATC
TGGTCCTCAGAAAACTCGCCCATCTTCGATGCACTCACCACCAATACGGC
CACTTTCGAAACGTGCACTTCTGATATTTCACCACCCCGTGTTTTCTCAA
GTCCAAGTCTCTCGAAATATGACGATCTCTGTTTTACTCGTGAAGAAATG
GTCGACTACATCCAGATCGTCATTAAGAACACCCCTGGATTGTTTGAATG
CGCAATGCTAAATACAGAAGTTATTTCCGTCAAACAAAAGCCTTCCAAGG
TATATGATATTATCTTTCAAACAGATGGAGCTCTACCAGGAATAGAAGTA
TACAAGGATAAGATTATGCATGTCCAGAAATACAAGAACCCTTTGCAGCT
AAAGGGAAAGCGTGTTTTGGTTGTCGGAGGCTCTGTGTCTGGTTGTGAAG
CGGCTGGTGACATGCTTTGCTTCGAGGCCTCTGAAGGTCCAGCAAGCGTT
ACCCTGAATACCAGAACGATGCGTTTCCTTCTTCTCAAACAACACGAGGG
TGAAGTTCTCATGTCGAAGGTATGCACCCGTTTCCATAGACTTCGTGATC
TTGCGGGGCGATTAGGAAATGAACATTATGCCAAAAACATGCATACGTTC
ATTCCTCAGTTTCTTTCAAACAGTGATTTCCCTGCCCCAGAACCAACCGG
TCCTATAAAGGTTCCATTTGTCCCAGCCTGGGCCCCCGTCAATGGAAAGT
TGTACCAAGCCTGTCAACAGAACAAGCTTGAATGGAAGATATCTCCCCTT
GAGTGTATTACCGAGAGTGGTGCCCGGTTTAAAGATGGTACTGCTGGTGA
CTATGACGTTATAGTGTTTTCGTCGGGTTATAAGCTTTCCCTTCCCTTTC
TGGAGGAAGATGTTCAAAGGGCTATATTTGCCGATGGAGTGAACCTGCTG
GATTTATATGATAACACATTTCACCCCGATGTGGCCAATATGGCATTCGT
GGGCATGTATCCGCCTGGTTCGGCGTATACTCCTATGGTTGATAACCAGT
CAAGGTGGGTGGCTCGGGTTTTCAGTGGTGACACCCCACTTCCAAGCTAC
GAAAGGATGAAGAAAGGTGTACAACAATACAAACAAACCCGTAGTTCCCC
AAACTCTCGCTTCTTGGTTACTGGCTATGACATTCTCGACGTTTTCGCCA
AGCACGGTGGCTTCGAAGTGGATCTTGCGAAATACCCTGAGTTAAGCAAG
GCGCTTCTCTTGGGTCCATTGGTTCCAGCCCAATTTCGCTTATTCGGAGA
ACAGCATTCAGAAAGTGCTATGGAAGACACAATCAGACAATTTGAAGCCG
GTGGGTTTAAGGTTGGGGACAACGTTGTGAGCATGGAAACCTATGAAGAG
CTCAATACGGTTTGCCAGATTTTGCAAGAGCAAGGTAACTGTCCACCCAG
CCTTCCGGCAGCAATTAGGAATTTAGTAGTATCCGATAGATAG
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protein sequence of Ggra4187.t1

>Ggra4187.t1 ID=Ggra4187.t1|Name=Ggra4187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=531bp
MQEQNPLQQPPATRIGIIGGGIAGICAARACILRGLNVTVFDMRSELGGI
WSSENSPIFDALTTNTATFETCTSDISPPRVFSSPSLSKYDDLCFTREEM
VDYIQIVIKNTPGLFECAMLNTEVISVKQKPSKVYDIIFQTDGALPGIEV
YKDKIMHVQKYKNPLQLKGKRVLVVGGSVSGCEAAGDMLCFEASEGPASV
TLNTRTMRFLLLKQHEGEVLMSKVCTRFHRLRDLAGRLGNEHYAKNMHTF
IPQFLSNSDFPAPEPTGPIKVPFVPAWAPVNGKLYQACQQNKLEWKISPL
ECITESGARFKDGTAGDYDVIVFSSGYKLSLPFLEEDVQRAIFADGVNLL
DLYDNTFHPDVANMAFVGMYPPGSAYTPMVDNQSRWVARVFSGDTPLPSY
ERMKKGVQQYKQTRSSPNSRFLVTGYDILDVFAKHGGFEVDLAKYPELSK
ALLLGPLVPAQFRLFGEQHSESAMEDTIRQFEAGGFKVGDNVVSMETYEE
LNTVCQILQEQGNCPPSLPAAIRNLVVSDR*
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mRNA from alignment at tig00000853_pilon:755184..756856+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4187.t1 ID=Ggra4187.t1|Name=Ggra4187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1673bp|location=Sequence derived from alignment at tig00000853_pilon:755184..756856+ (Gracilaria gracilis GNS1m male)
ATGCAGGAACAAAATCCGCTTCAGCAACCACCCGCTACTAGAATTGGCAT
AATAGGCGGAGGAATCGCCGGAATATGCGCAGCACGAGCATGCATTCTCC
GCGGTCTTAATGTCACAGTATTCGACATGCGTTCTGAGCTGGGTGGCATC
TGGTCCTCAGAAAACTCGCCCATCTTCGATGCACTCACCACCAATACGGC
CACTTTCGAAACGTGCACTTCTGATATTTCACCACCCCGTGTTTTCTCAA
GTCCAAGTCTCTCGAAATATGACGATCTCTGTTTTACTCGTGAAGAAATG
GTCGACTACATCCAGATCGTCATTAAGAACACCCCTGGATTGTTTGAATG
CGCAATGCTAAATACAGAAGTTATTTCCGTCAAACAAAAGCCTTCCAAGG
TATATGATATTATCTTTCAAACAGATGGAGCTGTTCTTAAAGAGCTGGAA
TTCGACAAGGTTGTCATAGCTACTGGATATTTTCACACTCCTTTCTCCCA
CCGCCTTCCGAGCTACCAGGAATAGAAGTATACAAGGATAAGATTATGCA
TGTCCAGAAATACAAGAACCCTTTGCAGCTAAAGGGAAAGCGTGTTTTGG
TTGTCGGAGGCTCTGTGTCTGGTTGTGAAGCGGCTGGTGACATGCTTTGC
TTCGAGGCCTCTGAAGGTCCAGCAAGCGTTACCCTGAATACCAGAACGAT
GCGTTTCCTTCTTCTCAAACAACACGAGGGTGAAGTTCTCATGTCGAAGG
TATGCACCCGTTTCCATAGACTTCGTGATCTTGCGGGGCGATTAGGAAAT
GAACATTATGCCAAAAACATGCATACGTTCATTCCTCAGTTTCTTTCAAA
CAGTGATTTCCCTGCCCCAGAACCAACCGGTCCTATAAAGGTTCCATTTG
TCCCAGCCTGGGCCCCCGTCAATGGAAAGTTGTACCAAGCCTGTCAACAG
AACAAGCTTGAATGGAAGATATCTCCCCTTGAGTGTATTACCGAGAGTGG
TGCCCGGTTTAAAGATGGTACTGCTGGTGACTATGACGTTATAGTGTTTT
CGTCGGGTTATAAGCTTTCCCTTCCCTTTCTGGAGGAAGATGTTCAAAGG
GCTATATTTGCCGATGGAGTGAACCTGCTGGATTTATATGATAACACATT
TCACCCCGATGTGGCCAATATGGCATTCGTGGGCATGTATCCGCCTGGTT
CGGCGTATACTCCTATGGTTGATAACCAGTCAAGGTGGGTGGCTCGGGTT
TTCAGTGGTGACACCCCACTTCCAAGCTACGAAAGGATGAAGAAAGGTGT
ACAACAATACAAACAAACCCGTAGTTCCCCAAACTCTCGCTTCTTGGTTA
CTGGCTATGACATTCTCGACGTTTTCGCCAAGCACGGTGGCTTCGAAGTG
GATCTTGCGAAATACCCTGAGTTAAGCAAGGCGCTTCTCTTGGGTCCATT
GGTTCCAGCCCAATTTCGCTTATTCGGAGAACAGCATTCAGAAAGTGCTA
TGGAAGACACAATCAGACAATTTGAAGCCGGTGGGTTTAAGGTTGGGGAC
AACGTTGTGAGCATGGAAACCTATGAAGAGCTCAATACGGTTTGCCAGAT
TTTGCAAGAGCAAGGTAACTGTCCACCCAGCCTTCCGGCAGCAATTAGGA
ATTTAGTAGTATCCGATAGATAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:755184..756856+

>Ggra4187.t1 ID=Ggra4187.t1|Name=Ggra4187.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1593bp|location=Sequence derived from alignment at tig00000853_pilon:755184..756856+ (Gracilaria gracilis GNS1m male)
ATGCAGGAACAAAATCCGCTTCAGCAACCACCCGCTACTAGAATTGGCAT
AATAGGCGGAGGAATCGCCGGAATATGCGCAGCACGAGCATGCATTCTCC
GCGGTCTTAATGTCACAGTATTCGACATGCGTTCTGAGCTGGGTGGCATC
TGGTCCTCAGAAAACTCGCCCATCTTCGATGCACTCACCACCAATACGGC
CACTTTCGAAACGTGCACTTCTGATATTTCACCACCCCGTGTTTTCTCAA
GTCCAAGTCTCTCGAAATATGACGATCTCTGTTTTACTCGTGAAGAAATG
GTCGACTACATCCAGATCGTCATTAAGAACACCCCTGGATTGTTTGAATG
CGCAATGCTAAATACAGAAGTTATTTCCGTCAAACAAAAGCCTTCCAAGG
TATATGATATTATCTTTCAAACAGATGGAGCTCTACCAGGAATAGAAGTA
TACAAGGATAAGATTATGCATGTCCAGAAATACAAGAACCCTTTGCAGCT
AAAGGGAAAGCGTGTTTTGGTTGTCGGAGGCTCTGTGTCTGGTTGTGAAG
CGGCTGGTGACATGCTTTGCTTCGAGGCCTCTGAAGGTCCAGCAAGCGTT
ACCCTGAATACCAGAACGATGCGTTTCCTTCTTCTCAAACAACACGAGGG
TGAAGTTCTCATGTCGAAGGTATGCACCCGTTTCCATAGACTTCGTGATC
TTGCGGGGCGATTAGGAAATGAACATTATGCCAAAAACATGCATACGTTC
ATTCCTCAGTTTCTTTCAAACAGTGATTTCCCTGCCCCAGAACCAACCGG
TCCTATAAAGGTTCCATTTGTCCCAGCCTGGGCCCCCGTCAATGGAAAGT
TGTACCAAGCCTGTCAACAGAACAAGCTTGAATGGAAGATATCTCCCCTT
GAGTGTATTACCGAGAGTGGTGCCCGGTTTAAAGATGGTACTGCTGGTGA
CTATGACGTTATAGTGTTTTCGTCGGGTTATAAGCTTTCCCTTCCCTTTC
TGGAGGAAGATGTTCAAAGGGCTATATTTGCCGATGGAGTGAACCTGCTG
GATTTATATGATAACACATTTCACCCCGATGTGGCCAATATGGCATTCGT
GGGCATGTATCCGCCTGGTTCGGCGTATACTCCTATGGTTGATAACCAGT
CAAGGTGGGTGGCTCGGGTTTTCAGTGGTGACACCCCACTTCCAAGCTAC
GAAAGGATGAAGAAAGGTGTACAACAATACAAACAAACCCGTAGTTCCCC
AAACTCTCGCTTCTTGGTTACTGGCTATGACATTCTCGACGTTTTCGCCA
AGCACGGTGGCTTCGAAGTGGATCTTGCGAAATACCCTGAGTTAAGCAAG
GCGCTTCTCTTGGGTCCATTGGTTCCAGCCCAATTTCGCTTATTCGGAGA
ACAGCATTCAGAAAGTGCTATGGAAGACACAATCAGACAATTTGAAGCCG
GTGGGTTTAAGGTTGGGGACAACGTTGTGAGCATGGAAACCTATGAAGAG
CTCAATACGGTTTGCCAGATTTTGCAAGAGCAAGGTAACTGTCCACCCAG
CCTTCCGGCAGCAATTAGGAATTTAGTAGTATCCGATAGATAG
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