Ggra4185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4185.t1
Unique NameGgra4185.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:736810..738198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_92730
PFAMsPGK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00927
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
Evalue1.38e-206
EggNOG OGsCOG0126@1|root,KOG1367@2759|Eukaryota
EC2.7.2.3
Descriptionphosphoglycerate kinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4185Ggra4185Gracilaria gracilis GNS1m malegenetig00000853_pilon 736810..738198 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4185.t1.start1Ggra4185.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 736810..736812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4185.t1.CDS1Ggra4185.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 736810..738198 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4185.t1.exon1Ggra4185.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 736810..738198 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4185.t1.stop1Ggra4185.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 738196..738198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4185.t1Ggra4185.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 736810..738198 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4185.t1 ID=Ggra4185.t1|Name=Ggra4185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp
MNAGFVSCSGAVTAAAVRPCANAPHSVSSRRSSFTTAAVRRVCAPSTPSS
PLALPRMAAAAVAAKKSVKDLSAADLSGKRVLVRCDLNVPLDGNTITDDT
RIRASVPTIQYLTERGAKVLLCSHLGRPKDGPEDKFSLKPVAARLSELLG
KSVTMAPDCIGEQVAALVRAMNDGDVTLLENVRFYKQESSNDGEFAAKLA
ANAQLFVNDAFGTAHRAHGSTAGVTAHLRPSVAGLLLEKELEYLGATVAN
PARPFAAIVGGSKVSSKIGVIESLLEKVDKLIIGGGMVFTFLKARGLSVG
SSLVEDDKLALAQRLEQVAAEKGVKIILPSDVVVADKFSADANTQVVSVD
AIPDGWMGLDQGEASTAMIQDELKECKTVIWNGPMGVFEMDKFAKGTFAV
ADTLAQLTDGGCVTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEG
KVLPGVAALDDN*
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spliced messenger RNA

>Ggra4185.t1 ID=Ggra4185.t1|Name=Ggra4185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000853_pilon:736810..738198+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCGGCTTTGTGAGCTGCTCCGGCGCGGTGACGGCGGCCGCCGT
GCGACCGTGCGCCAACGCGCCGCACAGCGTGTCCAGCAGAAGGTCGTCCT
TCACCACGgcggccgtgcgtcgcgtgtgcgcgccgagcacgccgtcgtcg
ccgctggcgctgcctcgcatggcggcggcggccgtggccgcCAAGAAGTC
GGTCAAGGACCTGTCGGCCGCCGATCTGAGCGGCAAACGCGTGCTGGTAC
GCTGCGACCTCAACGTTCCGCTGGACGGCAACACCATCACGGACGATACG
CGTATCCGCGCGTCCGTGCCCACCATCCAGTACCTCACGGAGCGCGGCGC
AAAGGTGCTGCTGTGCTCGCATCTGGGCCGTCCAAAGGACGGGCCGGAGG
ACAAGTTCTCGCTCAAGCCCGTGGCCGCGCGGCTGTCGGAGCTGCTGGGC
AAGTCGGTCACCATGGCGCCCGACTGCATTGGCGAGCAGGTGGCGGCGCT
GGTGCGCGCCATGAACGACGGCGACGTGACGCTGCTGGAAAACGTGCGCT
TCTACAAGCAGGAAAGCAGCAACGACGGCGAATTTGCGGCCAAGCTGGCC
GCCAACGCGCAGCTGTTTGTGAACGACGCGTTCGGCACGGCGCACCGCGC
GCACGGCTCCACGGCCGGCGTGACGGCGCACCTCAGGCCGTCCGTGGCCG
GGCTGTTGCTGGAGAAGGAGCTGGAGTATCTGGGCGCCACGGTGGCCAAC
CCGGCGCGGCCGTTCGCGGCCATTGTGGGCGGGTCCAAAGTGTCGTCCAA
GATCGGGGTGATTGAAAGCCTGCTGGAAAAGGTGGACAAGCTCATCATTG
GCGGCGGTATGGTGTTCACCTTCCTCAAGGCGCGCGGACTCAGCGTGGGC
TCGTCGCTGGTGGAGGACGACAAGCTGGCGCTGGCGCAGAGACTGGAGCA
AGTGGCGGCCGAAAAGGGCGTCAAAATCATCCTGCCGTCCGACGTGGTGG
TTGCCGATAAGTTTTCGGCGGACGCTAACACGCAGGTGGTGAGCGTGGAC
GCCATACCCGACGGGTGGATGGGGCTGGATCAGGGCGAGGCGTCCACGGC
CATGATCCAAGACGAGCTCAAGGAGTGCAAGACGGTGATCTGGAACGGGC
CCATGGGCGTGTTCGAGATGGACAAGTTCGCAAAGGGCACGTTCGCCGTG
GCGGACACGCTGGCGCAACTCACCGACGGCGGCTGCGTGACTATCATCGG
CGGTGGCGACTCGGTAGCGGCGGTGGAAAAGGCCGGACTGGCCGATAAAA
TGTCGCACATCTCCACCGGCGGCGGCGCGTCGCTGGAGCTGCTCGAGGGC
AAAGTGCTGCCGGGCGTCGCCGCGCTGGACGACAATTGA
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protein sequence of Ggra4185.t1

>Ggra4185.t1 ID=Ggra4185.t1|Name=Ggra4185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=463bp
MNAGFVSCSGAVTAAAVRPCANAPHSVSSRRSSFTTAAVRRVCAPSTPSS
PLALPRMAAAAVAAKKSVKDLSAADLSGKRVLVRCDLNVPLDGNTITDDT
RIRASVPTIQYLTERGAKVLLCSHLGRPKDGPEDKFSLKPVAARLSELLG
KSVTMAPDCIGEQVAALVRAMNDGDVTLLENVRFYKQESSNDGEFAAKLA
ANAQLFVNDAFGTAHRAHGSTAGVTAHLRPSVAGLLLEKELEYLGATVAN
PARPFAAIVGGSKVSSKIGVIESLLEKVDKLIIGGGMVFTFLKARGLSVG
SSLVEDDKLALAQRLEQVAAEKGVKIILPSDVVVADKFSADANTQVVSVD
AIPDGWMGLDQGEASTAMIQDELKECKTVIWNGPMGVFEMDKFAKGTFAV
ADTLAQLTDGGCVTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEG
KVLPGVAALDDN*
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mRNA from alignment at tig00000853_pilon:736810..738198+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4185.t1 ID=Ggra4185.t1|Name=Ggra4185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000853_pilon:736810..738198+ (Gracilaria gracilis GNS1m male)
ATGAACGCCGGCTTTGTGAGCTGCTCCGGCGCGGTGACGGCGGCCGCCGT
GCGACCGTGCGCCAACGCGCCGCACAGCGTGTCCAGCAGAAGGTCGTCCT
TCACCACGgcggccgtgcgtcgcgtgtgcgcgccgagcacgccgtcgtcg
ccgctggcgctgcctcgcatggcggcggcggccgtggccgcCAAGAAGTC
GGTCAAGGACCTGTCGGCCGCCGATCTGAGCGGCAAACGCGTGCTGGTAC
GCTGCGACCTCAACGTTCCGCTGGACGGCAACACCATCACGGACGATACG
CGTATCCGCGCGTCCGTGCCCACCATCCAGTACCTCACGGAGCGCGGCGC
AAAGGTGCTGCTGTGCTCGCATCTGGGCCGTCCAAAGGACGGGCCGGAGG
ACAAGTTCTCGCTCAAGCCCGTGGCCGCGCGGCTGTCGGAGCTGCTGGGC
AAGTCGGTCACCATGGCGCCCGACTGCATTGGCGAGCAGGTGGCGGCGCT
GGTGCGCGCCATGAACGACGGCGACGTGACGCTGCTGGAAAACGTGCGCT
TCTACAAGCAGGAAAGCAGCAACGACGGCGAATTTGCGGCCAAGCTGGCC
GCCAACGCGCAGCTGTTTGTGAACGACGCGTTCGGCACGGCGCACCGCGC
GCACGGCTCCACGGCCGGCGTGACGGCGCACCTCAGGCCGTCCGTGGCCG
GGCTGTTGCTGGAGAAGGAGCTGGAGTATCTGGGCGCCACGGTGGCCAAC
CCGGCGCGGCCGTTCGCGGCCATTGTGGGCGGGTCCAAAGTGTCGTCCAA
GATCGGGGTGATTGAAAGCCTGCTGGAAAAGGTGGACAAGCTCATCATTG
GCGGCGGTATGGTGTTCACCTTCCTCAAGGCGCGCGGACTCAGCGTGGGC
TCGTCGCTGGTGGAGGACGACAAGCTGGCGCTGGCGCAGAGACTGGAGCA
AGTGGCGGCCGAAAAGGGCGTCAAAATCATCCTGCCGTCCGACGTGGTGG
TTGCCGATAAGTTTTCGGCGGACGCTAACACGCAGGTGGTGAGCGTGGAC
GCCATACCCGACGGGTGGATGGGGCTGGATCAGGGCGAGGCGTCCACGGC
CATGATCCAAGACGAGCTCAAGGAGTGCAAGACGGTGATCTGGAACGGGC
CCATGGGCGTGTTCGAGATGGACAAGTTCGCAAAGGGCACGTTCGCCGTG
GCGGACACGCTGGCGCAACTCACCGACGGCGGCTGCGTGACTATCATCGG
CGGTGGCGACTCGGTAGCGGCGGTGGAAAAGGCCGGACTGGCCGATAAAA
TGTCGCACATCTCCACCGGCGGCGGCGCGTCGCTGGAGCTGCTCGAGGGC
AAAGTGCTGCCGGGCGTCGCCGCGCTGGACGACAATTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:736810..738198+

>Ggra4185.t1 ID=Ggra4185.t1|Name=Ggra4185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000853_pilon:736810..738198+ (Gracilaria gracilis GNS1m male)
ATGAACGCCGGCTTTGTGAGCTGCTCCGGCGCGGTGACGGCGGCCGCCGT
GCGACCGTGCGCCAACGCGCCGCACAGCGTGTCCAGCAGAAGGTCGTCCT
TCACCACGgcggccgtgcgtcgcgtgtgcgcgccgagcacgccgtcgtcg
ccgctggcgctgcctcgcatggcggcggcggccgtggccgcCAAGAAGTC
GGTCAAGGACCTGTCGGCCGCCGATCTGAGCGGCAAACGCGTGCTGGTAC
GCTGCGACCTCAACGTTCCGCTGGACGGCAACACCATCACGGACGATACG
CGTATCCGCGCGTCCGTGCCCACCATCCAGTACCTCACGGAGCGCGGCGC
AAAGGTGCTGCTGTGCTCGCATCTGGGCCGTCCAAAGGACGGGCCGGAGG
ACAAGTTCTCGCTCAAGCCCGTGGCCGCGCGGCTGTCGGAGCTGCTGGGC
AAGTCGGTCACCATGGCGCCCGACTGCATTGGCGAGCAGGTGGCGGCGCT
GGTGCGCGCCATGAACGACGGCGACGTGACGCTGCTGGAAAACGTGCGCT
TCTACAAGCAGGAAAGCAGCAACGACGGCGAATTTGCGGCCAAGCTGGCC
GCCAACGCGCAGCTGTTTGTGAACGACGCGTTCGGCACGGCGCACCGCGC
GCACGGCTCCACGGCCGGCGTGACGGCGCACCTCAGGCCGTCCGTGGCCG
GGCTGTTGCTGGAGAAGGAGCTGGAGTATCTGGGCGCCACGGTGGCCAAC
CCGGCGCGGCCGTTCGCGGCCATTGTGGGCGGGTCCAAAGTGTCGTCCAA
GATCGGGGTGATTGAAAGCCTGCTGGAAAAGGTGGACAAGCTCATCATTG
GCGGCGGTATGGTGTTCACCTTCCTCAAGGCGCGCGGACTCAGCGTGGGC
TCGTCGCTGGTGGAGGACGACAAGCTGGCGCTGGCGCAGAGACTGGAGCA
AGTGGCGGCCGAAAAGGGCGTCAAAATCATCCTGCCGTCCGACGTGGTGG
TTGCCGATAAGTTTTCGGCGGACGCTAACACGCAGGTGGTGAGCGTGGAC
GCCATACCCGACGGGTGGATGGGGCTGGATCAGGGCGAGGCGTCCACGGC
CATGATCCAAGACGAGCTCAAGGAGTGCAAGACGGTGATCTGGAACGGGC
CCATGGGCGTGTTCGAGATGGACAAGTTCGCAAAGGGCACGTTCGCCGTG
GCGGACACGCTGGCGCAACTCACCGACGGCGGCTGCGTGACTATCATCGG
CGGTGGCGACTCGGTAGCGGCGGTGGAAAAGGCCGGACTGGCCGATAAAA
TGTCGCACATCTCCACCGGCGGCGGCGCGTCGCTGGAGCTGCTCGAGGGC
AAAGTGCTGCCGGGCGTCGCCGCGCTGGACGACAATTGA
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