Ggra4180.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4180.t1
Unique NameGgra4180.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:516843..517478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005642721.1
PFAMsPITH
Max annot lvl3041|Chlorophyta
Evalue2.57e-49
EggNOG OGsKOG1730@1|root,KOG1730@2759|Eukaryota,37KVQ@33090|Viridiplantae,34I8N@3041|Chlorophyta
DescriptionPITH domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4180Ggra4180Gracilaria gracilis GNS1m malegenetig00000853_pilon 516843..517478 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4180.t1.start1Ggra4180.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 516843..516845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4180.t1.CDS1Ggra4180.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 516843..517478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4180.t1.exon1Ggra4180.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 516843..517478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4180.t1.stop1Ggra4180.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 517476..517478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4180.t1Ggra4180.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 516843..517478 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4180.t1 ID=Ggra4180.t1|Name=Ggra4180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MDGGRSGHTCSHAHHEHDHDDEGGGEAWALFEQVNTSALICLNEAQPNSL
KHVLRPWYKRCDPSLPTLKSDADEQLLMCIPFVSPVKIKSICIIGAGDVE
NPSHMKAYLNDEVLDFSSVERKRPIQEWDLTERNVDGVIEYPTKYTKFQN
VSKLWLFISANFGADFTEIRYIGLKGEYTKYKREAVNTVYESRPVKASED
VKSINTPRMGM*
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spliced messenger RNA

>Ggra4180.t1 ID=Ggra4180.t1|Name=Ggra4180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000853_pilon:516843..517478+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGTGGGCGCAGTGGACATACCTGCAGTCATGCGCACCATGAGCA
TGATCACGATGACGAAGGGGGTGGCGAAGCATGGGCACTTTTTGAACAAG
TCAATACCAGCGCACTAATATGTTTGAACGAAGCACAACCAAATTCACTC
AAACATGTTCTTCGCCCGTGGTATAAGCGTTGTGATCCGTCACTACCAAC
TTTAAAAAGCGATGCTGATGAGCAATTGCTCATGTGTATTCCGTTCGTCT
CTCCCGTGAAGATTAAGTCAATTTGTATCATCGGAGCCGGAGATGTAGAG
AACCCATCCCACATGAAGGCTTATTTAAACGATGAAGTGCTTGACTTTTC
GAGCGTCGAGAGAAAGAGGCCGATACAGGAATGGGATCTAACAGAGCGGA
ATGTCGACGGTGTCATTGAATACCCGACAAAATACACAAAGTTTCAAAAC
GTAAGCAAGTTGTGGCTGTTTATCAGTGCCAACTTCGGTGCAGATTTCAC
AGAGATCCGTTATATAGGTTTGAAAGGAGAGTACACGAAGTACAAAAGGG
AAGCTGTGAATACAGTTTACGAAAGTCGCCCGGTGAAGGCGTCTGAGGAC
GTAAAGAGTATTAATACACCAAGGATGGGAATGTGA
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protein sequence of Ggra4180.t1

>Ggra4180.t1 ID=Ggra4180.t1|Name=Ggra4180.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MDGGRSGHTCSHAHHEHDHDDEGGGEAWALFEQVNTSALICLNEAQPNSL
KHVLRPWYKRCDPSLPTLKSDADEQLLMCIPFVSPVKIKSICIIGAGDVE
NPSHMKAYLNDEVLDFSSVERKRPIQEWDLTERNVDGVIEYPTKYTKFQN
VSKLWLFISANFGADFTEIRYIGLKGEYTKYKREAVNTVYESRPVKASED
VKSINTPRMGM*
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mRNA from alignment at tig00000853_pilon:516843..517478+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4180.t1 ID=Ggra4180.t1|Name=Ggra4180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000853_pilon:516843..517478+ (Gracilaria gracilis GNS1m male)
ATGGACGGTGGGCGCAGTGGACATACCTGCAGTCATGCGCACCATGAGCA
TGATCACGATGACGAAGGGGGTGGCGAAGCATGGGCACTTTTTGAACAAG
TCAATACCAGCGCACTAATATGTTTGAACGAAGCACAACCAAATTCACTC
AAACATGTTCTTCGCCCGTGGTATAAGCGTTGTGATCCGTCACTACCAAC
TTTAAAAAGCGATGCTGATGAGCAATTGCTCATGTGTATTCCGTTCGTCT
CTCCCGTGAAGATTAAGTCAATTTGTATCATCGGAGCCGGAGATGTAGAG
AACCCATCCCACATGAAGGCTTATTTAAACGATGAAGTGCTTGACTTTTC
GAGCGTCGAGAGAAAGAGGCCGATACAGGAATGGGATCTAACAGAGCGGA
ATGTCGACGGTGTCATTGAATACCCGACAAAATACACAAAGTTTCAAAAC
GTAAGCAAGTTGTGGCTGTTTATCAGTGCCAACTTCGGTGCAGATTTCAC
AGAGATCCGTTATATAGGTTTGAAAGGAGAGTACACGAAGTACAAAAGGG
AAGCTGTGAATACAGTTTACGAAAGTCGCCCGGTGAAGGCGTCTGAGGAC
GTAAAGAGTATTAATACACCAAGGATGGGAATGTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:516843..517478+

>Ggra4180.t1 ID=Ggra4180.t1|Name=Ggra4180.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000853_pilon:516843..517478+ (Gracilaria gracilis GNS1m male)
ATGGACGGTGGGCGCAGTGGACATACCTGCAGTCATGCGCACCATGAGCA
TGATCACGATGACGAAGGGGGTGGCGAAGCATGGGCACTTTTTGAACAAG
TCAATACCAGCGCACTAATATGTTTGAACGAAGCACAACCAAATTCACTC
AAACATGTTCTTCGCCCGTGGTATAAGCGTTGTGATCCGTCACTACCAAC
TTTAAAAAGCGATGCTGATGAGCAATTGCTCATGTGTATTCCGTTCGTCT
CTCCCGTGAAGATTAAGTCAATTTGTATCATCGGAGCCGGAGATGTAGAG
AACCCATCCCACATGAAGGCTTATTTAAACGATGAAGTGCTTGACTTTTC
GAGCGTCGAGAGAAAGAGGCCGATACAGGAATGGGATCTAACAGAGCGGA
ATGTCGACGGTGTCATTGAATACCCGACAAAATACACAAAGTTTCAAAAC
GTAAGCAAGTTGTGGCTGTTTATCAGTGCCAACTTCGGTGCAGATTTCAC
AGAGATCCGTTATATAGGTTTGAAAGGAGAGTACACGAAGTACAAAAGGG
AAGCTGTGAATACAGTTTACGAAAGTCGCCCGGTGAAGGCGTCTGAGGAC
GTAAAGAGTATTAATACACCAAGGATGGGAATGTGA
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