Ggra4179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4179.t1
Unique NameGgra4179.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:515869..516178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708562.1
Preferred nameSNRPG
PFAMsLSM
Max annot lvl2759|Eukaryota
KEGG koko:K11099
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Evalue8.81e-23
EggNOG OGsKOG1780@1|root,KOG1780@2759|Eukaryota
Descriptionspliceosomal snRNP assembly
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4179Ggra4179Gracilaria gracilis GNS1m malegenetig00000853_pilon 515869..516178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4179.t1Ggra4179.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 515869..516178 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4179.t1.stop1Ggra4179.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 515869..515871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4179.t1.CDS1Ggra4179.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 515869..516047 -
Ggra4179.t1.CDS2Ggra4179.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 516127..516178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4179.t1.exon1Ggra4179.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 515869..516047 -
Ggra4179.t1.exon2Ggra4179.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 516127..516178 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4179.t1.intron1Ggra4179.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 516048..516126 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4179.t1.start1Ggra4179.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 516176..516178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4179.t1 ID=Ggra4179.t1|Name=Ggra4179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=77bp
MAKYLPEMKQLMEKRLNLGLNANRRVEGTLRGYDQFMNIVLDDCVEITAG
GQRRSMGMSVIRGNSILTMETLVSPR*
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spliced messenger RNA

>Ggra4179.t1 ID=Ggra4179.t1|Name=Ggra4179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp|location=Sequence derived from alignment at tig00000853_pilon:515869..516178- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAAATACTTGCCCGAAATGAAACAACTAATGGAAAAGCGTTTGAA
TCTTGGCCTCAACGCGAATCGAAGAGTTGAAGGAACACTACGAGGATACG
ATCAGTTTATGAACATTGTTTTGGATGATTGCGTGGAAATCACAGCGGGC
GGACAGAGAAGAAGTATGGGTATGAGCGTCATTCGCGGCAATTCTATCTT
GACAATGGAGACATTGGTCTCACCTAGATGA
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protein sequence of Ggra4179.t1

>Ggra4179.t1 ID=Ggra4179.t1|Name=Ggra4179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=77bp
MAKYLPEMKQLMEKRLNLGLNANRRVEGTLRGYDQFMNIVLDDCVEITAG
GQRRSMGMSVIRGNSILTMETLVSPR*
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mRNA from alignment at tig00000853_pilon:515869..516178-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4179.t1 ID=Ggra4179.t1|Name=Ggra4179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp|location=Sequence derived from alignment at tig00000853_pilon:515869..516178- (Gracilaria gracilis GNS1m male)
ATGGCTAAATACTTGCCCGAAATGAAACAACTAATGGAAAAGCGTTTGAA
TCGTATGTTTCTCGACAGTATCGCCACCTTTTTCAATAGATCTGAATGAC
TGACATTTCCATGTTTCTTCTTTTGTTGCAGTTGGCCTCAACGCGAATCG
AAGAGTTGAAGGAACACTACGAGGATACGATCAGTTTATGAACATTGTTT
TGGATGATTGCGTGGAAATCACAGCGGGCGGACAGAGAAGAAGTATGGGT
ATGAGCGTCATTCGCGGCAATTCTATCTTGACAATGGAGACATTGGTCTC
ACCTAGATGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:515869..516178-

>Ggra4179.t1 ID=Ggra4179.t1|Name=Ggra4179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=231bp|location=Sequence derived from alignment at tig00000853_pilon:515869..516178- (Gracilaria gracilis GNS1m male)
ATGGCTAAATACTTGCCCGAAATGAAACAACTAATGGAAAAGCGTTTGAA
TCTTGGCCTCAACGCGAATCGAAGAGTTGAAGGAACACTACGAGGATACG
ATCAGTTTATGAACATTGTTTTGGATGATTGCGTGGAAATCACAGCGGGC
GGACAGAGAAGAAGTATGGGTATGAGCGTCATTCGCGGCAATTCTATCTT
GACAATGGAGACATTGGTCTCACCTAGATGA
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