Ggra4177.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4177.t1
Unique Name	Ggra4177.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	651

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:511763..513715 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708614.1
PFAMs	ADK,Dpy-30,NAD_kinase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K00858,ko:K00939
KEGG Reaction	R00104,R00127,R01547,R11319
KEGG Pathway	ko00230,ko00730,ko00760,ko01100,ko01110,ko01130,map00230,map00730,map00760,map01100,map01110,map01130
KEGG Module	M00049
Evalue	3.93e-204
EggNOG OGs	COG0061@1\|root,COG0563@1\|root,KOG2178@2759\|Eukaryota,KOG3078@2759\|Eukaryota
EC	2.7.1.23,2.7.4.3
Description	adenylate kinase activity
COG category	F
BiGG Reaction	iRC1080.CRv4_Au5_s7_g13893_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4177	Ggra4177	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 511763..513715 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4177.t1.stop1	Ggra4177.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 511763..511765 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4177.t1.CDS1	Ggra4177.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 511763..513715 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4177.t1.exon1	Ggra4177.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 511763..513715 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4177.t1.start1	Ggra4177.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 513713..513715 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4177.t1	Ggra4177.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 511763..513715 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:511763..513715-
coding sequence from alignment at tig00000853_pilon:511763..513715-

mRNA sequence

>Ggra4177.t1 ID=Ggra4177.t1|Name=Ggra4177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp
MFWGPPGSGKSTLCEALSQTHGLVHISTGSLLRAHVLYETQLGMKAKPFV
QRSAPVPDEIVIPMVLERLRHVDCRKRGYLLDGFPRNVDQLHALNRAGFH
YRIAFMLQATRDTLERRIRYRRLDPETDSLYNLKLRPADSQEVLERLVIL
DKDRAANVPELFASYGRTTGEMFELLSPRSVRIDADRAFDDVFEDISSRI
ERCGVRRMHKKPSLKSRVAPLVATPPDSLGRANAVREHKVGDRPASAAAA
MRAMKATTTNQHPDGVFANEKTPITLVRCDGYMCERESVDGSHIAFRGAA
TEQVMLVWNQRPRTVLLLVKKDPNLIGSVLEAARYLIEVENLKVIVEPQV
QTRALANGLFLDTFASSETLYQNVDLVLCLGGDGLILHVCTLFRTAVPPV
VSFNLGSLGFLTPFQFKDFQSEIVAVLKGNCNLSLRMRLTCGIIRDGYVE
QEFQVLNEVVVDRGASPYLSNLDCYCDGKYITTVQADGIIMSTPTGSTAY
SMSAGGSMVHPSVPAILFTPICPHSLSFRPIVFPDSAKLRIEISDDARSH
AWASFDGKSRQQLRRGDGLLIEMNLFPVPTVNKTDHTGDWFQSLDRAFNF
NSRAMQKPISRKRLLRPPVKGNGTQKAKGMNKEIKVEENGVPHVDVGDGF
*

spliced messenger RNA

>Ggra4177.t1 ID=Ggra4177.t1|Name=Ggra4177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00000853_pilon:511763..513715- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGGGGACCACCGGGCTCAGGGAAGTCAACTCTATGTGAGGCACT
CTCTCAAACCCATGGCCTGGTTCATATATCAACCGGCAGTTTGCTTCGGG
CTCATGTGCTGTACGAAACGCAATTAGGTATGAAAGCGAAACCATTCGTT
CAGCGATCAGCACCAGTTCCGGATGAAATTGTTATTCCAATGGTGCTGGA
ACGATTGAGGCATGTCGATTGTAGGAAACGTGGGTACTTGCTGGACGGGT
TTCCGAGGAACGTGGACCAGCTTCATGCTCTCAATAGAGCTGGTTTTCAT
TATCGGATTGCCTTCATGCTGCAAGCTACTCGTGACACCCTAGAGAGACG
CATCCGCTACCGTCGCCTTGACCCAGAAACTGACAGCTTGTACAACTTGA
AGTTGCGGCCTGCCGATAGTCAAGAAGTTCTCGAACGCCTGGTGATTTTG
GACAAGGACCGCGCAGCGAACGTACCGGAACTGTTCGCGAGCTATGGGCG
TACCACCGGTGAAATGTTTGAGCTTTTGTCTCCTCGCTCCGTGCGTATAG
ACGCTGACCGCGCATTTGATGATGTGTTCGAAGATATCAGTTCACGTATC
GAACGTTGTGGAGTTCGCAGGATGCACAAGAAGCCCAGCTTGAAGTCTCG
TGTTGCACCTTTGGTAGCCACCCCTCCAGACAGTTTGGGGAGAGCAAACG
CGGTTCGCGAACACAAAGTTGGGGATCGACCGGCATCGGCTGCCGCTGCA
ATGCGTGCTATGAAGGCTACCACAACTAATCAACATCCAGATGGCGTCTT
CGCGAATGAGAAAACTCCTATCACTCTTGTTCGTTGTGATGGTTACATGT
GTGAGAGGGAGAGTGTTGATGGAAGTCACATTGCCTTTCGCGGGGCCGCA
ACAGAACAAGTCATGCTTGTTTGGAATCAAAGACCTCGAACTGTTTTGTT
GCTCGTGAAGAAGGACCCAAATTTGATAGGGAGTGTCCTAGAAGCCGCAC
GATATCTTATTGAAGTTGAAAACTTGAAGGTGATTGTCGAACCTCAGGTA
CAAACACGTGCACTGGCGAATGGACTGTTTTTGGATACCTTCGCATCATC
TGAAACGTTGTATCAAAATGTGGACCTTGTTCTCTGCCTAGGAGGCGATG
GGCTTATTCTACATGTATGCACGCTTTTCAGAACAGCAGTACCGCCGGTC
GTGAGCTTCAACCTCGGTAGCCTGGGTTTTCTTACTCCATTCCAGTTTAA
AGATTTCCAGAGTGAAATTGTGGCTGTGTTGAAAGGAAATTGCAATCTAA
GCCTCCGGATGCGGTTAACTTGTGGTATAATAAGAGATGGGTATGTCGAG
CAGGAGTTTCAAGTGCTAAACGAAGTTGTTGTGGACCGTGGAGCATCCCC
GTATTTGTCCAACCTGGACTGTTATTGTGATGGGAAGTACATCACGACGG
TTCAGGCCGACGGAATCATCATGTCTACCCCCACAGGATCCACGGCATAC
TCGATGTCAGCAGGTGGCTCTATGGTACATCCGTCGGTACCAGCGATTTT
GTTCACTCCAATCTGTCCCCACAGTCTTTCTTTCCGGCCGATTGTGTTTC
CAGATTCCGCGAAGCTGCGCATCGAGATATCAGATGACGCTAGATCACAT
GCGTGGGCAAGCTTTGACGGCAAATCAAGGCAACAACTTCGACGTGGTGA
CGGGTTACTGATTGAGATGAACCTGTTCCCTGTTCCGACCGTGAATAAGA
CTGATCACACTGGAGACTGGTTCCAATCACTTGATCGAGCGTTTAATTTC
AACAGTAGGGCCATGCAAAAGCCAATATCAAGGAAGCGACTCCTTCGCCC
GCCTGTGAAGGGCAACGGAACCCAAAAGGCCAAGGGAATGAACAAAGAAA
TCAAAGTTGAAGAAAATGGTGTTCCTCATGTTGACGTGGGAGACGGGTTT
TAA

protein sequence of Ggra4177.t1

>Ggra4177.t1 ID=Ggra4177.t1|Name=Ggra4177.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=651bp
MFWGPPGSGKSTLCEALSQTHGLVHISTGSLLRAHVLYETQLGMKAKPFV
QRSAPVPDEIVIPMVLERLRHVDCRKRGYLLDGFPRNVDQLHALNRAGFH
YRIAFMLQATRDTLERRIRYRRLDPETDSLYNLKLRPADSQEVLERLVIL
DKDRAANVPELFASYGRTTGEMFELLSPRSVRIDADRAFDDVFEDISSRI
ERCGVRRMHKKPSLKSRVAPLVATPPDSLGRANAVREHKVGDRPASAAAA
MRAMKATTTNQHPDGVFANEKTPITLVRCDGYMCERESVDGSHIAFRGAA
TEQVMLVWNQRPRTVLLLVKKDPNLIGSVLEAARYLIEVENLKVIVEPQV
QTRALANGLFLDTFASSETLYQNVDLVLCLGGDGLILHVCTLFRTAVPPV
VSFNLGSLGFLTPFQFKDFQSEIVAVLKGNCNLSLRMRLTCGIIRDGYVE
QEFQVLNEVVVDRGASPYLSNLDCYCDGKYITTVQADGIIMSTPTGSTAY
SMSAGGSMVHPSVPAILFTPICPHSLSFRPIVFPDSAKLRIEISDDARSH
AWASFDGKSRQQLRRGDGLLIEMNLFPVPTVNKTDHTGDWFQSLDRAFNF
NSRAMQKPISRKRLLRPPVKGNGTQKAKGMNKEIKVEENGVPHVDVGDGF
*

mRNA from alignment at tig00000853_pilon:511763..513715-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4177.t1 ID=Ggra4177.t1|Name=Ggra4177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00000853_pilon:511763..513715- (Gracilaria gracilis GNS1m male)
ATGTTTTGGGGACCACCGGGCTCAGGGAAGTCAACTCTATGTGAGGCACT
CTCTCAAACCCATGGCCTGGTTCATATATCAACCGGCAGTTTGCTTCGGG
CTCATGTGCTGTACGAAACGCAATTAGGTATGAAAGCGAAACCATTCGTT
CAGCGATCAGCACCAGTTCCGGATGAAATTGTTATTCCAATGGTGCTGGA
ACGATTGAGGCATGTCGATTGTAGGAAACGTGGGTACTTGCTGGACGGGT
TTCCGAGGAACGTGGACCAGCTTCATGCTCTCAATAGAGCTGGTTTTCAT
TATCGGATTGCCTTCATGCTGCAAGCTACTCGTGACACCCTAGAGAGACG
CATCCGCTACCGTCGCCTTGACCCAGAAACTGACAGCTTGTACAACTTGA
AGTTGCGGCCTGCCGATAGTCAAGAAGTTCTCGAACGCCTGGTGATTTTG
GACAAGGACCGCGCAGCGAACGTACCGGAACTGTTCGCGAGCTATGGGCG
TACCACCGGTGAAATGTTTGAGCTTTTGTCTCCTCGCTCCGTGCGTATAG
ACGCTGACCGCGCATTTGATGATGTGTTCGAAGATATCAGTTCACGTATC
GAACGTTGTGGAGTTCGCAGGATGCACAAGAAGCCCAGCTTGAAGTCTCG
TGTTGCACCTTTGGTAGCCACCCCTCCAGACAGTTTGGGGAGAGCAAACG
CGGTTCGCGAACACAAAGTTGGGGATCGACCGGCATCGGCTGCCGCTGCA
ATGCGTGCTATGAAGGCTACCACAACTAATCAACATCCAGATGGCGTCTT
CGCGAATGAGAAAACTCCTATCACTCTTGTTCGTTGTGATGGTTACATGT
GTGAGAGGGAGAGTGTTGATGGAAGTCACATTGCCTTTCGCGGGGCCGCA
ACAGAACAAGTCATGCTTGTTTGGAATCAAAGACCTCGAACTGTTTTGTT
GCTCGTGAAGAAGGACCCAAATTTGATAGGGAGTGTCCTAGAAGCCGCAC
GATATCTTATTGAAGTTGAAAACTTGAAGGTGATTGTCGAACCTCAGGTA
CAAACACGTGCACTGGCGAATGGACTGTTTTTGGATACCTTCGCATCATC
TGAAACGTTGTATCAAAATGTGGACCTTGTTCTCTGCCTAGGAGGCGATG
GGCTTATTCTACATGTATGCACGCTTTTCAGAACAGCAGTACCGCCGGTC
GTGAGCTTCAACCTCGGTAGCCTGGGTTTTCTTACTCCATTCCAGTTTAA
AGATTTCCAGAGTGAAATTGTGGCTGTGTTGAAAGGAAATTGCAATCTAA
GCCTCCGGATGCGGTTAACTTGTGGTATAATAAGAGATGGGTATGTCGAG
CAGGAGTTTCAAGTGCTAAACGAAGTTGTTGTGGACCGTGGAGCATCCCC
GTATTTGTCCAACCTGGACTGTTATTGTGATGGGAAGTACATCACGACGG
TTCAGGCCGACGGAATCATCATGTCTACCCCCACAGGATCCACGGCATAC
TCGATGTCAGCAGGTGGCTCTATGGTACATCCGTCGGTACCAGCGATTTT
GTTCACTCCAATCTGTCCCCACAGTCTTTCTTTCCGGCCGATTGTGTTTC
CAGATTCCGCGAAGCTGCGCATCGAGATATCAGATGACGCTAGATCACAT
GCGTGGGCAAGCTTTGACGGCAAATCAAGGCAACAACTTCGACGTGGTGA
CGGGTTACTGATTGAGATGAACCTGTTCCCTGTTCCGACCGTGAATAAGA
CTGATCACACTGGAGACTGGTTCCAATCACTTGATCGAGCGTTTAATTTC
AACAGTAGGGCCATGCAAAAGCCAATATCAAGGAAGCGACTCCTTCGCCC
GCCTGTGAAGGGCAACGGAACCCAAAAGGCCAAGGGAATGAACAAAGAAA
TCAAAGTTGAAGAAAATGGTGTTCCTCATGTTGACGTGGGAGACGGGTTT
TAA

Coding sequence (CDS) from alignment at tig00000853_pilon:511763..513715-

>Ggra4177.t1 ID=Ggra4177.t1|Name=Ggra4177.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1953bp|location=Sequence derived from alignment at tig00000853_pilon:511763..513715- (Gracilaria gracilis GNS1m male)
ATGTTTTGGGGACCACCGGGCTCAGGGAAGTCAACTCTATGTGAGGCACT
CTCTCAAACCCATGGCCTGGTTCATATATCAACCGGCAGTTTGCTTCGGG
CTCATGTGCTGTACGAAACGCAATTAGGTATGAAAGCGAAACCATTCGTT
CAGCGATCAGCACCAGTTCCGGATGAAATTGTTATTCCAATGGTGCTGGA
ACGATTGAGGCATGTCGATTGTAGGAAACGTGGGTACTTGCTGGACGGGT
TTCCGAGGAACGTGGACCAGCTTCATGCTCTCAATAGAGCTGGTTTTCAT
TATCGGATTGCCTTCATGCTGCAAGCTACTCGTGACACCCTAGAGAGACG
CATCCGCTACCGTCGCCTTGACCCAGAAACTGACAGCTTGTACAACTTGA
AGTTGCGGCCTGCCGATAGTCAAGAAGTTCTCGAACGCCTGGTGATTTTG
GACAAGGACCGCGCAGCGAACGTACCGGAACTGTTCGCGAGCTATGGGCG
TACCACCGGTGAAATGTTTGAGCTTTTGTCTCCTCGCTCCGTGCGTATAG
ACGCTGACCGCGCATTTGATGATGTGTTCGAAGATATCAGTTCACGTATC
GAACGTTGTGGAGTTCGCAGGATGCACAAGAAGCCCAGCTTGAAGTCTCG
TGTTGCACCTTTGGTAGCCACCCCTCCAGACAGTTTGGGGAGAGCAAACG
CGGTTCGCGAACACAAAGTTGGGGATCGACCGGCATCGGCTGCCGCTGCA
ATGCGTGCTATGAAGGCTACCACAACTAATCAACATCCAGATGGCGTCTT
CGCGAATGAGAAAACTCCTATCACTCTTGTTCGTTGTGATGGTTACATGT
GTGAGAGGGAGAGTGTTGATGGAAGTCACATTGCCTTTCGCGGGGCCGCA
ACAGAACAAGTCATGCTTGTTTGGAATCAAAGACCTCGAACTGTTTTGTT
GCTCGTGAAGAAGGACCCAAATTTGATAGGGAGTGTCCTAGAAGCCGCAC
GATATCTTATTGAAGTTGAAAACTTGAAGGTGATTGTCGAACCTCAGGTA
CAAACACGTGCACTGGCGAATGGACTGTTTTTGGATACCTTCGCATCATC
TGAAACGTTGTATCAAAATGTGGACCTTGTTCTCTGCCTAGGAGGCGATG
GGCTTATTCTACATGTATGCACGCTTTTCAGAACAGCAGTACCGCCGGTC
GTGAGCTTCAACCTCGGTAGCCTGGGTTTTCTTACTCCATTCCAGTTTAA
AGATTTCCAGAGTGAAATTGTGGCTGTGTTGAAAGGAAATTGCAATCTAA
GCCTCCGGATGCGGTTAACTTGTGGTATAATAAGAGATGGGTATGTCGAG
CAGGAGTTTCAAGTGCTAAACGAAGTTGTTGTGGACCGTGGAGCATCCCC
GTATTTGTCCAACCTGGACTGTTATTGTGATGGGAAGTACATCACGACGG
TTCAGGCCGACGGAATCATCATGTCTACCCCCACAGGATCCACGGCATAC
TCGATGTCAGCAGGTGGCTCTATGGTACATCCGTCGGTACCAGCGATTTT
GTTCACTCCAATCTGTCCCCACAGTCTTTCTTTCCGGCCGATTGTGTTTC
CAGATTCCGCGAAGCTGCGCATCGAGATATCAGATGACGCTAGATCACAT
GCGTGGGCAAGCTTTGACGGCAAATCAAGGCAACAACTTCGACGTGGTGA
CGGGTTACTGATTGAGATGAACCTGTTCCCTGTTCCGACCGTGAATAAGA
CTGATCACACTGGAGACTGGTTCCAATCACTTGATCGAGCGTTTAATTTC
AACAGTAGGGCCATGCAAAAGCCAATATCAAGGAAGCGACTCCTTCGCCC
GCCTGTGAAGGGCAACGGAACCCAAAAGGCCAAGGGAATGAACAAAGAAA
TCAAAGTTGAAGAAAATGGTGTTCCTCATGTTGACGTGGGAGACGGGTTT
TAA