Ggra4164.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4164.t1
Unique NameGgra4164.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:433032..434510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1219065.VPR01S_01_04780
Preferred namegabD
PFAMsAldedh
Max annot lvl135623|Vibrionales
KEGG rclassRC00080
KEGG koko:K00135
KEGG ReactionR00713,R00714,R02401
KEGG Pathwayko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120
KEGG ModuleM00027
Evalue2.49e-130
EggNOG OGsCOG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1XSW9@135623|Vibrionales
EC1.2.1.16,1.2.1.20,1.2.1.79
DescriptionInvolved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4164Ggra4164Gracilaria gracilis GNS1m malegenetig00000853_pilon 433032..434510 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4164.t1.start1Ggra4164.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 433032..433034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4164.t1.CDS1Ggra4164.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 433032..434510 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4164.t1.exon1Ggra4164.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 433032..434510 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4164.t1.stop1Ggra4164.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 434508..434510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4164.t1Ggra4164.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 433032..434510 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4164.t1 ID=Ggra4164.t1|Name=Ggra4164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MVIVNATDTQILDLGLKDPTLLPTSSFIDNAACASNDTNRLKIYNPSDGS
VVITVSQATQEVVQRAIESSTATQIEWRDTHIDHRIRLLKEWVALMREAR
HDIARVITLENGKPYAQALGEVEYAAGFFDWNAQHVLHASNTSTVDLSPS
SRSIVTKSAIGVVLAITPWNFPLAMLARKVSAAVAAGCSVIAKPSEFTPL
AALMLAELGRRAGAPRGLLNVVVTERAEQTVDHILAAPAVQMLSFTGSTH
IGKIVGQRAAQRVQRVGLELGGHAPFIVFDDADVDKAISGLLKNKLRNSG
QSCVSANRIFVQDKVHALFVDLLREKLLDIKVGDGFGEADIGPLIGSKSI
QKIRAQLDDAKLGGAECIVGGGINGNFCDASLLTGVTDDMLIAREETFGP
LICVLRFDSESEVWDRANKTKAGLAAYIYTKDMGRQMRGLRELHYGMVGL
NDVSVSAASTSFGGLRESGLGREGGHDSLEDYLSTKFALLSF*
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spliced messenger RNA

>Ggra4164.t1 ID=Ggra4164.t1|Name=Ggra4164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000853_pilon:433032..434510+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATTGTGAATGCAACCGATACTCAAATCTTGGATCTAGGTCTCAA
GGACCCCACTCTGCTTCCCACTTCTTCTTTCATCGATAACGCTGCCTGTG
CATCCAATGATACGAACCGGTTGAAAATCTACAATCCCTCCGATGGCAGT
GTTGTCATCACAGTTTCTCAAGCCACGCAAGAAGTGGTTCAACGTGCGAT
AGAGTCATCCACAGCAACTCAGATCGAATGGCGCGATACCCACATAGACC
ATCGCATACGATTACTGAAAGAATGGGTAGCACTCATGCGCGAGGCCCGT
CATGATATCGCTCGTGTAATAACGCTCGAAAACGGTAAGCCGTACGCTCA
GGCTCTCGGTGAGGTAGAATATGCGGCCGGTTTCTTCGACTGGAACGCCC
AACATGTCTTACATGCCTCCAATACTTCCACGGTCGATTTGTCACCTTCA
TCACGCTCCATTGTCACAAAATCGGCGATTGGAGTTGTTCTGGCAATTAC
GCCATGGAACTTCCCACTAGCGATGCTGGCTCGAAAGGTTTCAGCGGCTG
TGGCAGCAGGATGTTCCGTTATTGCCAAACCCTCTGAGTTCACGCCACTC
GCCGCGTTGATGCTCGCCGAACTAGGTCGTCGAGCAGGAGCACCAAGGGG
ACTGCTTAATGTAGTGGTTACGGAACGGGCGGAACAAACAGTGGATCACA
TTTTAGCGGCTCCTGCTGTGCAAATGCTATCGTTCACAGGGTCAACGCAT
ATCGGTAAAATCGTCGGGCAGCGGGCAGCACAACGCGTGCAACGCGTAGG
CTTGGAACTAGGCGGTCACGCACCGTTTATCGTTTTCGATGATGCTGATG
TGGACAAAGCGATCTCGGGACTCTTGAAGAACAAGCTCCGCAACAGTGGG
CAATCTTGTGTATCTGCAAACCGCATTTTCGTTCAAGACAAAGTGCATGC
TCTCTTCGTAGATTTGTTGCGAGAAAAGCTACTTGACATTAAAGTCGGAG
ATGGATTTGGCGAGGCAGATATTGGACCATTGATTGGAAGCAAGTCAATC
CAAAAAATTCGAGCGCAACTTGATGATGCAAAGCTCGGAGGGGCTGAATG
TATCGTCGGTGGTGGAATTAATGGCAACTTTTGTGACGCATCTCTTTTAA
CAGGAGTCACTGATGATATGTTGATTGCTAGAGAGGAAACCTTTGGACCC
TTGATATGCGTGTTGAGGTTTGACAGCGAATCAGAAGTTTGGGACCGTGC
AAATAAGACCAAAGCTGGTTTAGCCGCCTACATTTACACCAAGGACATGG
GTAGACAAATGCGAGGACTGCGAGAGCTACATTACGGAATGGTTGGTCTG
AATGACGTAAGTGTCAGTGCTGCGTCGACATCATTTGGTGGACTGAGGGA
GAGTGGTTTAGGAAGGGAAGGTGGTCATGACAGTCTTGAGGACTATCTGT
CAACCAAATTTGCTCTATTGAGCTTCTAA
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protein sequence of Ggra4164.t1

>Ggra4164.t1 ID=Ggra4164.t1|Name=Ggra4164.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MVIVNATDTQILDLGLKDPTLLPTSSFIDNAACASNDTNRLKIYNPSDGS
VVITVSQATQEVVQRAIESSTATQIEWRDTHIDHRIRLLKEWVALMREAR
HDIARVITLENGKPYAQALGEVEYAAGFFDWNAQHVLHASNTSTVDLSPS
SRSIVTKSAIGVVLAITPWNFPLAMLARKVSAAVAAGCSVIAKPSEFTPL
AALMLAELGRRAGAPRGLLNVVVTERAEQTVDHILAAPAVQMLSFTGSTH
IGKIVGQRAAQRVQRVGLELGGHAPFIVFDDADVDKAISGLLKNKLRNSG
QSCVSANRIFVQDKVHALFVDLLREKLLDIKVGDGFGEADIGPLIGSKSI
QKIRAQLDDAKLGGAECIVGGGINGNFCDASLLTGVTDDMLIAREETFGP
LICVLRFDSESEVWDRANKTKAGLAAYIYTKDMGRQMRGLRELHYGMVGL
NDVSVSAASTSFGGLRESGLGREGGHDSLEDYLSTKFALLSF*
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mRNA from alignment at tig00000853_pilon:433032..434510+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4164.t1 ID=Ggra4164.t1|Name=Ggra4164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000853_pilon:433032..434510+ (Gracilaria gracilis GNS1m male)
ATGGTTATTGTGAATGCAACCGATACTCAAATCTTGGATCTAGGTCTCAA
GGACCCCACTCTGCTTCCCACTTCTTCTTTCATCGATAACGCTGCCTGTG
CATCCAATGATACGAACCGGTTGAAAATCTACAATCCCTCCGATGGCAGT
GTTGTCATCACAGTTTCTCAAGCCACGCAAGAAGTGGTTCAACGTGCGAT
AGAGTCATCCACAGCAACTCAGATCGAATGGCGCGATACCCACATAGACC
ATCGCATACGATTACTGAAAGAATGGGTAGCACTCATGCGCGAGGCCCGT
CATGATATCGCTCGTGTAATAACGCTCGAAAACGGTAAGCCGTACGCTCA
GGCTCTCGGTGAGGTAGAATATGCGGCCGGTTTCTTCGACTGGAACGCCC
AACATGTCTTACATGCCTCCAATACTTCCACGGTCGATTTGTCACCTTCA
TCACGCTCCATTGTCACAAAATCGGCGATTGGAGTTGTTCTGGCAATTAC
GCCATGGAACTTCCCACTAGCGATGCTGGCTCGAAAGGTTTCAGCGGCTG
TGGCAGCAGGATGTTCCGTTATTGCCAAACCCTCTGAGTTCACGCCACTC
GCCGCGTTGATGCTCGCCGAACTAGGTCGTCGAGCAGGAGCACCAAGGGG
ACTGCTTAATGTAGTGGTTACGGAACGGGCGGAACAAACAGTGGATCACA
TTTTAGCGGCTCCTGCTGTGCAAATGCTATCGTTCACAGGGTCAACGCAT
ATCGGTAAAATCGTCGGGCAGCGGGCAGCACAACGCGTGCAACGCGTAGG
CTTGGAACTAGGCGGTCACGCACCGTTTATCGTTTTCGATGATGCTGATG
TGGACAAAGCGATCTCGGGACTCTTGAAGAACAAGCTCCGCAACAGTGGG
CAATCTTGTGTATCTGCAAACCGCATTTTCGTTCAAGACAAAGTGCATGC
TCTCTTCGTAGATTTGTTGCGAGAAAAGCTACTTGACATTAAAGTCGGAG
ATGGATTTGGCGAGGCAGATATTGGACCATTGATTGGAAGCAAGTCAATC
CAAAAAATTCGAGCGCAACTTGATGATGCAAAGCTCGGAGGGGCTGAATG
TATCGTCGGTGGTGGAATTAATGGCAACTTTTGTGACGCATCTCTTTTAA
CAGGAGTCACTGATGATATGTTGATTGCTAGAGAGGAAACCTTTGGACCC
TTGATATGCGTGTTGAGGTTTGACAGCGAATCAGAAGTTTGGGACCGTGC
AAATAAGACCAAAGCTGGTTTAGCCGCCTACATTTACACCAAGGACATGG
GTAGACAAATGCGAGGACTGCGAGAGCTACATTACGGAATGGTTGGTCTG
AATGACGTAAGTGTCAGTGCTGCGTCGACATCATTTGGTGGACTGAGGGA
GAGTGGTTTAGGAAGGGAAGGTGGTCATGACAGTCTTGAGGACTATCTGT
CAACCAAATTTGCTCTATTGAGCTTCTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:433032..434510+

>Ggra4164.t1 ID=Ggra4164.t1|Name=Ggra4164.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000853_pilon:433032..434510+ (Gracilaria gracilis GNS1m male)
ATGGTTATTGTGAATGCAACCGATACTCAAATCTTGGATCTAGGTCTCAA
GGACCCCACTCTGCTTCCCACTTCTTCTTTCATCGATAACGCTGCCTGTG
CATCCAATGATACGAACCGGTTGAAAATCTACAATCCCTCCGATGGCAGT
GTTGTCATCACAGTTTCTCAAGCCACGCAAGAAGTGGTTCAACGTGCGAT
AGAGTCATCCACAGCAACTCAGATCGAATGGCGCGATACCCACATAGACC
ATCGCATACGATTACTGAAAGAATGGGTAGCACTCATGCGCGAGGCCCGT
CATGATATCGCTCGTGTAATAACGCTCGAAAACGGTAAGCCGTACGCTCA
GGCTCTCGGTGAGGTAGAATATGCGGCCGGTTTCTTCGACTGGAACGCCC
AACATGTCTTACATGCCTCCAATACTTCCACGGTCGATTTGTCACCTTCA
TCACGCTCCATTGTCACAAAATCGGCGATTGGAGTTGTTCTGGCAATTAC
GCCATGGAACTTCCCACTAGCGATGCTGGCTCGAAAGGTTTCAGCGGCTG
TGGCAGCAGGATGTTCCGTTATTGCCAAACCCTCTGAGTTCACGCCACTC
GCCGCGTTGATGCTCGCCGAACTAGGTCGTCGAGCAGGAGCACCAAGGGG
ACTGCTTAATGTAGTGGTTACGGAACGGGCGGAACAAACAGTGGATCACA
TTTTAGCGGCTCCTGCTGTGCAAATGCTATCGTTCACAGGGTCAACGCAT
ATCGGTAAAATCGTCGGGCAGCGGGCAGCACAACGCGTGCAACGCGTAGG
CTTGGAACTAGGCGGTCACGCACCGTTTATCGTTTTCGATGATGCTGATG
TGGACAAAGCGATCTCGGGACTCTTGAAGAACAAGCTCCGCAACAGTGGG
CAATCTTGTGTATCTGCAAACCGCATTTTCGTTCAAGACAAAGTGCATGC
TCTCTTCGTAGATTTGTTGCGAGAAAAGCTACTTGACATTAAAGTCGGAG
ATGGATTTGGCGAGGCAGATATTGGACCATTGATTGGAAGCAAGTCAATC
CAAAAAATTCGAGCGCAACTTGATGATGCAAAGCTCGGAGGGGCTGAATG
TATCGTCGGTGGTGGAATTAATGGCAACTTTTGTGACGCATCTCTTTTAA
CAGGAGTCACTGATGATATGTTGATTGCTAGAGAGGAAACCTTTGGACCC
TTGATATGCGTGTTGAGGTTTGACAGCGAATCAGAAGTTTGGGACCGTGC
AAATAAGACCAAAGCTGGTTTAGCCGCCTACATTTACACCAAGGACATGG
GTAGACAAATGCGAGGACTGCGAGAGCTACATTACGGAATGGTTGGTCTG
AATGACGTAAGTGTCAGTGCTGCGTCGACATCATTTGGTGGACTGAGGGA
GAGTGGTTTAGGAAGGGAAGGTGGTCATGACAGTCTTGAGGACTATCTGT
CAACCAAATTTGCTCTATTGAGCTTCTAA
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