Ggra4162.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4162.t1
Unique NameGgra4162.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:428860..429894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707321.1
Preferred nameRPE
PFAMsRibul_P_3_epim
Max annot lvl2759|Eukaryota
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
GOsGO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009058,GO:0009117,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019253,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019685,GO:0019693,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055035,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575,GO:1901576
Evalue8.63e-115
EggNOG OGsCOG0036@1|root,KOG3111@2759|Eukaryota
EC5.1.3.1
Descriptionribulose-phosphate 3-epimerase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4162Ggra4162Gracilaria gracilis GNS1m malegenetig00000853_pilon 428860..429894 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4162.t1.stop1Ggra4162.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 428860..428862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4162.t1.CDS1Ggra4162.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 428860..429894 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4162.t1.exon1Ggra4162.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 428860..429894 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4162.t1.start1Ggra4162.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 429892..429894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4162.t1Ggra4162.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 428860..429894 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4162.t1 ID=Ggra4162.t1|Name=Ggra4162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MALHADWTHSPKINAPLPTARPARAPIAAADLKPIAPSITRTSPARRLLH
NSQPRHHQLAHTTLNLRLPQPKMGTTAFAASSSLIQRSVFAPATSQQPAT
CARPQRIVPTAAVDVPAPAKGQVVISPSILSADFSKLGDEVRAIDTAGCD
WVHVDVMDGRFVPNITIGPLVVSALRPVTNKPLDVHLMIVEPELLIPEFA
KAGADIISVHCEGESTIHLHRTLNLIKDLGCKAGVVLNPATPASAIEYVI
ELCDLILVMSVNPGFGGQGFIDSVVPKVAAIRKMADERGLNPWIEVDGGI
KGHNAYKVVEAGANSLVSGSGVFGASSYADAIAEIRAAKRPVLV*
back to top

spliced messenger RNA

>Ggra4162.t1 ID=Ggra4162.t1|Name=Ggra4162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000853_pilon:428860..429894- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGCACGCTGATTGGACGCACAGCCCTAAAATTAATGCGCCTTT
GCCGACCGCTCGTCCTGCTCGGGCTCCCATCGCAGCTGCCGACCTCAAAC
CCATCGCGCCCTCGATCACTCGCACCTCCCCCGCGCGTCGTCTCCTTCAC
AACTCACAGCCACGCCACCATCAACTCGCACACACCACCCTAAATTTGCG
CCTTCCACAACCAAAGATGGGAACCACTGCGTTCGCCGCATCATCCTCGC
TGATTCAGCGCTCTGTCTTCGCGCCAGCTACCAGTCAACAGCCCGCCACA
TGCGCTCGGCCACAGCGCATCGTGCCCACAGCCGCCGTTGACGTGCCTGC
TCCAGCAAAAGGTCAGGTCGTCATCTCTCCTTCCATCCTCTCGGCCGATT
TTTCAAAGCTCGGAGACGAAGTGCGTGCAATCGATACGGCAGGATGTGAT
TGGGTTCACGTTGATGTTATGGACGGTCGTTTTGTGCCAAACATTACCAT
TGGCCCATTGGTTGTGAGTGCGCTTCGACCGGTCACAAATAAGCCGCTTG
ACGTTCATCTCATGATTGTTGAACCAGAGCTCTTGATTCCTGAGTTTGCC
AAGGCCGGTGCTGATATCATTTCTGTACATTGTGAAGGAGAGAGTACAAT
TCATCTCCACAGAACTCTGAACCTCATCAAGGATCTCGGATGCAAGGCTG
GCGTTGTTCTCAACCCCGCTACTCCAGCGTCCGCCATTGAATACGTTATT
GAGCTCTGCGACCTCATACTCGTCATGTCAGTAAACCCCGGCTTCGGCGG
ACAAGGTTTCATTGACTCGGTAGTACCGAAGGTTGCTGCAATCCGAAAAA
TGGCTGATGAGCGTGGTCTCAACCCATGGATTGAGGTTGACGGTGGTATC
AAGGGCCATAACGCTTACAAGGTTGTTGAGGCTGGGGCAAACTCGCTCGT
GTCGGGATCTGGTGTATTCGGCGCATCGAGCTACGCTGATGCTATTGCAG
AGATTCGCGCCGCAAAACGGCCTGTCCTTGTCTAG
back to top

protein sequence of Ggra4162.t1

>Ggra4162.t1 ID=Ggra4162.t1|Name=Ggra4162.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MALHADWTHSPKINAPLPTARPARAPIAAADLKPIAPSITRTSPARRLLH
NSQPRHHQLAHTTLNLRLPQPKMGTTAFAASSSLIQRSVFAPATSQQPAT
CARPQRIVPTAAVDVPAPAKGQVVISPSILSADFSKLGDEVRAIDTAGCD
WVHVDVMDGRFVPNITIGPLVVSALRPVTNKPLDVHLMIVEPELLIPEFA
KAGADIISVHCEGESTIHLHRTLNLIKDLGCKAGVVLNPATPASAIEYVI
ELCDLILVMSVNPGFGGQGFIDSVVPKVAAIRKMADERGLNPWIEVDGGI
KGHNAYKVVEAGANSLVSGSGVFGASSYADAIAEIRAAKRPVLV*
back to top

mRNA from alignment at tig00000853_pilon:428860..429894-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4162.t1 ID=Ggra4162.t1|Name=Ggra4162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000853_pilon:428860..429894- (Gracilaria gracilis GNS1m male)
ATGGCGCTGCACGCTGATTGGACGCACAGCCCTAAAATTAATGCGCCTTT
GCCGACCGCTCGTCCTGCTCGGGCTCCCATCGCAGCTGCCGACCTCAAAC
CCATCGCGCCCTCGATCACTCGCACCTCCCCCGCGCGTCGTCTCCTTCAC
AACTCACAGCCACGCCACCATCAACTCGCACACACCACCCTAAATTTGCG
CCTTCCACAACCAAAGATGGGAACCACTGCGTTCGCCGCATCATCCTCGC
TGATTCAGCGCTCTGTCTTCGCGCCAGCTACCAGTCAACAGCCCGCCACA
TGCGCTCGGCCACAGCGCATCGTGCCCACAGCCGCCGTTGACGTGCCTGC
TCCAGCAAAAGGTCAGGTCGTCATCTCTCCTTCCATCCTCTCGGCCGATT
TTTCAAAGCTCGGAGACGAAGTGCGTGCAATCGATACGGCAGGATGTGAT
TGGGTTCACGTTGATGTTATGGACGGTCGTTTTGTGCCAAACATTACCAT
TGGCCCATTGGTTGTGAGTGCGCTTCGACCGGTCACAAATAAGCCGCTTG
ACGTTCATCTCATGATTGTTGAACCAGAGCTCTTGATTCCTGAGTTTGCC
AAGGCCGGTGCTGATATCATTTCTGTACATTGTGAAGGAGAGAGTACAAT
TCATCTCCACAGAACTCTGAACCTCATCAAGGATCTCGGATGCAAGGCTG
GCGTTGTTCTCAACCCCGCTACTCCAGCGTCCGCCATTGAATACGTTATT
GAGCTCTGCGACCTCATACTCGTCATGTCAGTAAACCCCGGCTTCGGCGG
ACAAGGTTTCATTGACTCGGTAGTACCGAAGGTTGCTGCAATCCGAAAAA
TGGCTGATGAGCGTGGTCTCAACCCATGGATTGAGGTTGACGGTGGTATC
AAGGGCCATAACGCTTACAAGGTTGTTGAGGCTGGGGCAAACTCGCTCGT
GTCGGGATCTGGTGTATTCGGCGCATCGAGCTACGCTGATGCTATTGCAG
AGATTCGCGCCGCAAAACGGCCTGTCCTTGTCTAG
back to top

Coding sequence (CDS) from alignment at tig00000853_pilon:428860..429894-

>Ggra4162.t1 ID=Ggra4162.t1|Name=Ggra4162.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000853_pilon:428860..429894- (Gracilaria gracilis GNS1m male)
ATGGCGCTGCACGCTGATTGGACGCACAGCCCTAAAATTAATGCGCCTTT
GCCGACCGCTCGTCCTGCTCGGGCTCCCATCGCAGCTGCCGACCTCAAAC
CCATCGCGCCCTCGATCACTCGCACCTCCCCCGCGCGTCGTCTCCTTCAC
AACTCACAGCCACGCCACCATCAACTCGCACACACCACCCTAAATTTGCG
CCTTCCACAACCAAAGATGGGAACCACTGCGTTCGCCGCATCATCCTCGC
TGATTCAGCGCTCTGTCTTCGCGCCAGCTACCAGTCAACAGCCCGCCACA
TGCGCTCGGCCACAGCGCATCGTGCCCACAGCCGCCGTTGACGTGCCTGC
TCCAGCAAAAGGTCAGGTCGTCATCTCTCCTTCCATCCTCTCGGCCGATT
TTTCAAAGCTCGGAGACGAAGTGCGTGCAATCGATACGGCAGGATGTGAT
TGGGTTCACGTTGATGTTATGGACGGTCGTTTTGTGCCAAACATTACCAT
TGGCCCATTGGTTGTGAGTGCGCTTCGACCGGTCACAAATAAGCCGCTTG
ACGTTCATCTCATGATTGTTGAACCAGAGCTCTTGATTCCTGAGTTTGCC
AAGGCCGGTGCTGATATCATTTCTGTACATTGTGAAGGAGAGAGTACAAT
TCATCTCCACAGAACTCTGAACCTCATCAAGGATCTCGGATGCAAGGCTG
GCGTTGTTCTCAACCCCGCTACTCCAGCGTCCGCCATTGAATACGTTATT
GAGCTCTGCGACCTCATACTCGTCATGTCAGTAAACCCCGGCTTCGGCGG
ACAAGGTTTCATTGACTCGGTAGTACCGAAGGTTGCTGCAATCCGAAAAA
TGGCTGATGAGCGTGGTCTCAACCCATGGATTGAGGTTGACGGTGGTATC
AAGGGCCATAACGCTTACAAGGTTGTTGAGGCTGGGGCAAACTCGCTCGT
GTCGGGATCTGGTGTATTCGGCGCATCGAGCTACGCTGATGCTATTGCAG
AGATTCGCGCCGCAAAACGGCCTGTCCTTGTCTAG
back to top