Ggra4161.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4161.t1
Unique Name	Ggra4161.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	616

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:426666..428513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005111910.1
Preferred name	SACM1L
PFAMs	Syja_N
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00078
KEGG ko	ko:K21797
KEGG Reaction	R11680
KEGG Pathway	ko00562,ko01100,ko04070,map00562,map01100,map04070
GOs	GO:0000139,GO:0000226,GO:0000902,GO:0000904,GO:0001700,GO:0001932,GO:0001933,GO:0002009,GO:0003674,GO:0003824,GO:0004438,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0005887,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006810,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007391,GO:0007399,GO:0007409,GO:0007411,GO:0008037,GO:0008038,GO:0008088,GO:0008150,GO:0008152,GO:0008328,GO:0008610,GO:0008654,GO:0009058,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010970,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016198,GO:0016199,GO:0016311,GO:0016331,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019637,GO:0021700,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030176,GO:0030182,GO:0030258,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031122,GO:0031175,GO:0031224,GO:0031226,GO:0031227,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031984,GO:0032268,GO:0032269,GO:0032281,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032989,GO:0032990,GO:0032991,GO:0034593,GO:0034596,GO:0034702,GO:0034703,GO:0036477,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042578,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043408,GO:0043409,GO:0043812,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045017,GO:0045936,GO:0046328,GO:0046329,GO:0046474,GO:0046486,GO:0046488,GO:0046664,GO:0046839,GO:0046856,GO:0046907,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048598,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051641,GO:0051649,GO:0052744,GO:0052866,GO:0060074,GO:0060255,GO:0060429,GO:0061564,GO:0065007,GO:0070302,GO:0070303,GO:0071683,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090407,GO:0097435,GO:0097447,GO:0097458,GO:0097485,GO:0098588,GO:0098791,GO:0098796,GO:0098797,GO:0098802,GO:0098827,GO:0098878,GO:0099111,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1901576,GO:1902495,GO:1902531,GO:1902532,GO:1990351
Evalue	6.83e-104
EggNOG OGs	COG5329@1\|root,KOG1889@2759\|Eukaryota,38DI4@33154\|Opisthokonta,3BFQP@33208\|Metazoa,3CW7N@33213\|Bilateria
Description	phosphatidylinositol-4-phosphate phosphatase activity
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4161	Ggra4161	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 426666..428513 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4161.t1.start1	Ggra4161.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 426666..426668 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4161.t1.CDS1	Ggra4161.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 426666..428513 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4161.t1.exon1	Ggra4161.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 426666..428513 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4161.t1.stop1	Ggra4161.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 428511..428513 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4161.t1	Ggra4161.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 426666..428513 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:426666..428513+
coding sequence from alignment at tig00000853_pilon:426666..428513+

mRNA sequence

>Ggra4161.t1 ID=Ggra4161.t1|Name=Ggra4161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp
MDSFVLSTSPRWMTVEPAASDLPEKQVLFIDRSTLKVSLLDRNECAALAE
PDTRRVIYGLVGYIESLHDAYLLVISKRMSVGTIMEQTVWRVQKLEAIPV
RGAKILKRKALDLNLSKQNIAEETIVKGMVNAAVALPGFYFSHDLDLTKS
AQKRADAASASDDAAAAPDFARADLRFVWNRYAAKKLIEVGAVSWLVPLI
LGYVDVRSGVVNGKSVQLALISRRCANRPGLRYTARGADKQGNVSNFVET
EQIVSHGDAYSSYVQIRGSIPLLWKQEANIKYKPKPTLKEVDSGGKGGLC
QMAFEKHFDSLFEQYGPVTAISLVDGNGGEASLSNALKTAVELMQNSKLH
FVPWDFHTKTKGMKYEKVDQDLVPSIDSDLSAYSYFYTKDGTALGISRRQ
RGVVRTNCVDSLDRTNVVQSAIAHQIMDTALKVMGVLDSDVDSCSTSKFE
AFEKEFKGTWADHADALSQVYAGSGALKTDFTRTGKRSKLGMAQDGLRAI
RRYMYQNFLDGRRQDGIDIMLGVVPIPGTSGYPGTQRSLSVIKSKAEPLL
FWERYLPHLVLFCFFVVCVASIGITAVKTKYAMIGLGVAGMVTFFRLMLT
VGHKLVSRPRLDGTN*

spliced messenger RNA

>Ggra4161.t1 ID=Ggra4161.t1|Name=Ggra4161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000853_pilon:426666..428513+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCATTTGTGCTTTCCACTTCTCCGCGATGGATGACTGTGGAGCC
TGCCGCCTCTGATCTTCCTGAAAAGCAAGTTCTCTTTATCGACCGATCTA
CACTCAAAGTCTCTCTTCTTGATCGCAATGAATGTGCAGCTCTCGCGGAG
CCTGATACTCGACGCGTTATCTACGGTCTCGTTGGTTACATCGAATCCCT
GCACGATGCCTACCTGCTTGTCATATCGAAGCGCATGTCAGTGGGGACAA
TCATGGAACAAACTGTATGGCGCGTTCAAAAGCTAGAAGCTATACCCGTC
CGAGGAGCCAAGATTCTGAAACGAAAAGCACTTGACCTCAACCTTAGCAA
GCAGAACATTGCAGAGGAAACTATTGTTAAAGGAATGGTTAACGCTGCAG
TGGCCCTTCCTGGGTTTTACTTTTCGCACGATCTTGATCTTACCAAGTCA
GCTCAGAAGCGAGCAGACGCTGCCTCCGCCAGTGATGACGCGGCTGCCGC
TCCTGATTTTGCACGCGCAGACCTTAGGTTTGTCTGGAATCGTTATGCAG
CTAAGAAGCTCATAGAGGTTGGTGCCGTCTCGTGGCTTGTTCCTTTGATT
CTTGGATATGTGGATGTTCGCTCAGGTGTCGTCAATGGCAAATCTGTCCA
GCTTGCACTAATCTCTCGAAGATGTGCCAACCGACCGGGTTTGAGGTATA
CTGCTCGCGGCGCGGATAAACAAGGCAACGTCAGCAATTTTGTCGAAACC
GAACAGATTGTGAGCCATGGGGATGCATACAGCAGTTATGTACAAATCCG
CGGCAGCATACCGTTGTTATGGAAGCAAGAGGCAAATATCAAGTACAAAC
CGAAGCCAACGCTCAAGGAAGTGGATTCCGGTGGCAAGGGCGGTTTGTGT
CAGATGGCTTTCGAGAAGCATTTTGACTCTCTCTTTGAACAATATGGCCC
AGTTACCGCGATTTCTCTCGTCGATGGCAACGGCGGCGAAGCTTCACTTT
CCAACGCACTCAAAACCGCAGTTGAGCTTATGCAGAACTCAAAACTTCAT
TTTGTTCCGTGGGACTTCCATACCAAAACCAAAGGAATGAAGTATGAGAA
GGTAGACCAAGATTTAGTGCCTTCTATCGATTCTGACCTAAGCGCATACA
GCTACTTTTATACAAAAGATGGAACTGCGTTAGGTATTTCCCGGCGTCAA
CGAGGTGTTGTTCGAACCAACTGTGTGGATAGCTTGGATCGAACAAACGT
TGTCCAAAGCGCTATCGCCCATCAAATCATGGATACGGCACTGAAAGTGA
TGGGTGTATTGGATAGCGACGTGGACTCTTGTTCTACATCAAAATTCGAA
GCCTTCGAAAAGGAATTCAAAGGGACTTGGGCTGATCATGCTGACGCTTT
GTCTCAAGTATATGCGGGTTCAGGAGCCTTGAAGACCGACTTTACACGCA
CGGGTAAGCGGTCTAAGCTTGGAATGGCTCAGGATGGACTTCGTGCTATT
CGTCGCTACATGTATCAAAACTTTTTGGATGGGCGAAGGCAAGACGGCAT
TGATATCATGTTGGGTGTCGTTCCCATACCAGGGACATCTGGATATCCAG
GTACACAACGCTCGTTGAGTGTAATCAAGTCCAAAGCTGAACCACTGCTG
TTCTGGGAAAGATATTTGCCACACCTGGTTCTCTTTTGCTTTTTTGTGGT
TTGTGTCGCATCCATTGGTATCACGGCCGTGAAGACGAAGTACGCAATGA
TTGGATTAGGAGTTGCTGGAATGGTCACGTTCTTCAGGTTGATGTTGACT
GTTGGGCACAAACTGGTTTCAAGGCCAAGGCTTGATGGAACTAATTAG

protein sequence of Ggra4161.t1

>Ggra4161.t1 ID=Ggra4161.t1|Name=Ggra4161.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=616bp
MDSFVLSTSPRWMTVEPAASDLPEKQVLFIDRSTLKVSLLDRNECAALAE
PDTRRVIYGLVGYIESLHDAYLLVISKRMSVGTIMEQTVWRVQKLEAIPV
RGAKILKRKALDLNLSKQNIAEETIVKGMVNAAVALPGFYFSHDLDLTKS
AQKRADAASASDDAAAAPDFARADLRFVWNRYAAKKLIEVGAVSWLVPLI
LGYVDVRSGVVNGKSVQLALISRRCANRPGLRYTARGADKQGNVSNFVET
EQIVSHGDAYSSYVQIRGSIPLLWKQEANIKYKPKPTLKEVDSGGKGGLC
QMAFEKHFDSLFEQYGPVTAISLVDGNGGEASLSNALKTAVELMQNSKLH
FVPWDFHTKTKGMKYEKVDQDLVPSIDSDLSAYSYFYTKDGTALGISRRQ
RGVVRTNCVDSLDRTNVVQSAIAHQIMDTALKVMGVLDSDVDSCSTSKFE
AFEKEFKGTWADHADALSQVYAGSGALKTDFTRTGKRSKLGMAQDGLRAI
RRYMYQNFLDGRRQDGIDIMLGVVPIPGTSGYPGTQRSLSVIKSKAEPLL
FWERYLPHLVLFCFFVVCVASIGITAVKTKYAMIGLGVAGMVTFFRLMLT
VGHKLVSRPRLDGTN*

mRNA from alignment at tig00000853_pilon:426666..428513+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4161.t1 ID=Ggra4161.t1|Name=Ggra4161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000853_pilon:426666..428513+ (Gracilaria gracilis GNS1m male)
ATGGATTCATTTGTGCTTTCCACTTCTCCGCGATGGATGACTGTGGAGCC
TGCCGCCTCTGATCTTCCTGAAAAGCAAGTTCTCTTTATCGACCGATCTA
CACTCAAAGTCTCTCTTCTTGATCGCAATGAATGTGCAGCTCTCGCGGAG
CCTGATACTCGACGCGTTATCTACGGTCTCGTTGGTTACATCGAATCCCT
GCACGATGCCTACCTGCTTGTCATATCGAAGCGCATGTCAGTGGGGACAA
TCATGGAACAAACTGTATGGCGCGTTCAAAAGCTAGAAGCTATACCCGTC
CGAGGAGCCAAGATTCTGAAACGAAAAGCACTTGACCTCAACCTTAGCAA
GCAGAACATTGCAGAGGAAACTATTGTTAAAGGAATGGTTAACGCTGCAG
TGGCCCTTCCTGGGTTTTACTTTTCGCACGATCTTGATCTTACCAAGTCA
GCTCAGAAGCGAGCAGACGCTGCCTCCGCCAGTGATGACGCGGCTGCCGC
TCCTGATTTTGCACGCGCAGACCTTAGGTTTGTCTGGAATCGTTATGCAG
CTAAGAAGCTCATAGAGGTTGGTGCCGTCTCGTGGCTTGTTCCTTTGATT
CTTGGATATGTGGATGTTCGCTCAGGTGTCGTCAATGGCAAATCTGTCCA
GCTTGCACTAATCTCTCGAAGATGTGCCAACCGACCGGGTTTGAGGTATA
CTGCTCGCGGCGCGGATAAACAAGGCAACGTCAGCAATTTTGTCGAAACC
GAACAGATTGTGAGCCATGGGGATGCATACAGCAGTTATGTACAAATCCG
CGGCAGCATACCGTTGTTATGGAAGCAAGAGGCAAATATCAAGTACAAAC
CGAAGCCAACGCTCAAGGAAGTGGATTCCGGTGGCAAGGGCGGTTTGTGT
CAGATGGCTTTCGAGAAGCATTTTGACTCTCTCTTTGAACAATATGGCCC
AGTTACCGCGATTTCTCTCGTCGATGGCAACGGCGGCGAAGCTTCACTTT
CCAACGCACTCAAAACCGCAGTTGAGCTTATGCAGAACTCAAAACTTCAT
TTTGTTCCGTGGGACTTCCATACCAAAACCAAAGGAATGAAGTATGAGAA
GGTAGACCAAGATTTAGTGCCTTCTATCGATTCTGACCTAAGCGCATACA
GCTACTTTTATACAAAAGATGGAACTGCGTTAGGTATTTCCCGGCGTCAA
CGAGGTGTTGTTCGAACCAACTGTGTGGATAGCTTGGATCGAACAAACGT
TGTCCAAAGCGCTATCGCCCATCAAATCATGGATACGGCACTGAAAGTGA
TGGGTGTATTGGATAGCGACGTGGACTCTTGTTCTACATCAAAATTCGAA
GCCTTCGAAAAGGAATTCAAAGGGACTTGGGCTGATCATGCTGACGCTTT
GTCTCAAGTATATGCGGGTTCAGGAGCCTTGAAGACCGACTTTACACGCA
CGGGTAAGCGGTCTAAGCTTGGAATGGCTCAGGATGGACTTCGTGCTATT
CGTCGCTACATGTATCAAAACTTTTTGGATGGGCGAAGGCAAGACGGCAT
TGATATCATGTTGGGTGTCGTTCCCATACCAGGGACATCTGGATATCCAG
GTACACAACGCTCGTTGAGTGTAATCAAGTCCAAAGCTGAACCACTGCTG
TTCTGGGAAAGATATTTGCCACACCTGGTTCTCTTTTGCTTTTTTGTGGT
TTGTGTCGCATCCATTGGTATCACGGCCGTGAAGACGAAGTACGCAATGA
TTGGATTAGGAGTTGCTGGAATGGTCACGTTCTTCAGGTTGATGTTGACT
GTTGGGCACAAACTGGTTTCAAGGCCAAGGCTTGATGGAACTAATTAG

Coding sequence (CDS) from alignment at tig00000853_pilon:426666..428513+

>Ggra4161.t1 ID=Ggra4161.t1|Name=Ggra4161.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1848bp|location=Sequence derived from alignment at tig00000853_pilon:426666..428513+ (Gracilaria gracilis GNS1m male)
ATGGATTCATTTGTGCTTTCCACTTCTCCGCGATGGATGACTGTGGAGCC
TGCCGCCTCTGATCTTCCTGAAAAGCAAGTTCTCTTTATCGACCGATCTA
CACTCAAAGTCTCTCTTCTTGATCGCAATGAATGTGCAGCTCTCGCGGAG
CCTGATACTCGACGCGTTATCTACGGTCTCGTTGGTTACATCGAATCCCT
GCACGATGCCTACCTGCTTGTCATATCGAAGCGCATGTCAGTGGGGACAA
TCATGGAACAAACTGTATGGCGCGTTCAAAAGCTAGAAGCTATACCCGTC
CGAGGAGCCAAGATTCTGAAACGAAAAGCACTTGACCTCAACCTTAGCAA
GCAGAACATTGCAGAGGAAACTATTGTTAAAGGAATGGTTAACGCTGCAG
TGGCCCTTCCTGGGTTTTACTTTTCGCACGATCTTGATCTTACCAAGTCA
GCTCAGAAGCGAGCAGACGCTGCCTCCGCCAGTGATGACGCGGCTGCCGC
TCCTGATTTTGCACGCGCAGACCTTAGGTTTGTCTGGAATCGTTATGCAG
CTAAGAAGCTCATAGAGGTTGGTGCCGTCTCGTGGCTTGTTCCTTTGATT
CTTGGATATGTGGATGTTCGCTCAGGTGTCGTCAATGGCAAATCTGTCCA
GCTTGCACTAATCTCTCGAAGATGTGCCAACCGACCGGGTTTGAGGTATA
CTGCTCGCGGCGCGGATAAACAAGGCAACGTCAGCAATTTTGTCGAAACC
GAACAGATTGTGAGCCATGGGGATGCATACAGCAGTTATGTACAAATCCG
CGGCAGCATACCGTTGTTATGGAAGCAAGAGGCAAATATCAAGTACAAAC
CGAAGCCAACGCTCAAGGAAGTGGATTCCGGTGGCAAGGGCGGTTTGTGT
CAGATGGCTTTCGAGAAGCATTTTGACTCTCTCTTTGAACAATATGGCCC
AGTTACCGCGATTTCTCTCGTCGATGGCAACGGCGGCGAAGCTTCACTTT
CCAACGCACTCAAAACCGCAGTTGAGCTTATGCAGAACTCAAAACTTCAT
TTTGTTCCGTGGGACTTCCATACCAAAACCAAAGGAATGAAGTATGAGAA
GGTAGACCAAGATTTAGTGCCTTCTATCGATTCTGACCTAAGCGCATACA
GCTACTTTTATACAAAAGATGGAACTGCGTTAGGTATTTCCCGGCGTCAA
CGAGGTGTTGTTCGAACCAACTGTGTGGATAGCTTGGATCGAACAAACGT
TGTCCAAAGCGCTATCGCCCATCAAATCATGGATACGGCACTGAAAGTGA
TGGGTGTATTGGATAGCGACGTGGACTCTTGTTCTACATCAAAATTCGAA
GCCTTCGAAAAGGAATTCAAAGGGACTTGGGCTGATCATGCTGACGCTTT
GTCTCAAGTATATGCGGGTTCAGGAGCCTTGAAGACCGACTTTACACGCA
CGGGTAAGCGGTCTAAGCTTGGAATGGCTCAGGATGGACTTCGTGCTATT
CGTCGCTACATGTATCAAAACTTTTTGGATGGGCGAAGGCAAGACGGCAT
TGATATCATGTTGGGTGTCGTTCCCATACCAGGGACATCTGGATATCCAG
GTACACAACGCTCGTTGAGTGTAATCAAGTCCAAAGCTGAACCACTGCTG
TTCTGGGAAAGATATTTGCCACACCTGGTTCTCTTTTGCTTTTTTGTGGT
TTGTGTCGCATCCATTGGTATCACGGCCGTGAAGACGAAGTACGCAATGA
TTGGATTAGGAGTTGCTGGAATGGTCACGTTCTTCAGGTTGATGTTGACT
GTTGGGCACAAACTGGTTTCAAGGCCAAGGCTTGATGGAACTAATTAG