Ggra416.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra416.t1
Unique NameGgra416.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000928_piloncontigtig00000928_pilon:112249..113670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35682
Preferred nameatpB
PFAMsATP-synt_DE,ATP-synt_DE_N,ATP-synt_ab,ATP-synt_ab_N
Max annot lvl2759|Eukaryota
KEGG koko:K02112,ko:K02114,ko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
GOsGO:0000275,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009814,GO:0009817,GO:0009987,GO:0010035,GO:0010038,GO:0010287,GO:0010319,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0032991,GO:0033178,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042221,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045087,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046689,GO:0046872,GO:0046914,GO:0046933,GO:0050832,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055035,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098542,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098807,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Evalue3.82e-279
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota
EC3.6.3.14
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra416Ggra416Gracilaria gracilis GNS1m malegenetig00000928_pilon 112249..113670 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra416.t1.stop1Ggra416.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000928_pilon 112249..112251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra416.t1.CDS1Ggra416.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000928_pilon 112249..113670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra416.t1.exon1Ggra416.t1.exon1Gracilaria gracilis GNS1m maleexontig00000928_pilon 112249..113670 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra416.t1.start1Ggra416.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000928_pilon 113668..113670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra416.t1Ggra416.t1Gracilaria gracilis GNS1m malepolypeptidetig00000928_pilon 112249..113670 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra416.t1 ID=Ggra416.t1|Name=Ggra416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MVSINNQGCVTQIIGPVLDIEFPNGQLPKVLNALKVKGPDNTITCEVQQL
LGDNKVRAVAMSSTEGLKRGIEVTDTGAPITVPVGIPTLGRIFNVLGEPV
DNLGKIKSEDSLPIHRAAPLFTQLETKPSIFETGIKVVDLIAPYRKGGKI
GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKE
SKVINADDLKESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDV
LLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGTLQERITSTTD
GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRSLAAKGIYPAVDPL
GSTSTMLQPSIVGQKHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDR
LTVARARKIERFLSQPFFVAEVFTGSPGKYVSLEECIKGFNMILSGELDD
LPEQAFYLVGNIEEAISKAEKLK*
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spliced messenger RNA

>Ggra416.t1 ID=Ggra416.t1|Name=Ggra416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000928_pilon:112249..113670- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAGTATAAATAATCAAGGATGCGTAACACAAATTATAGGACCTGT
ATTAGATATAGAATTTCCCAATGGTCAATTACCTAAAGTATTAAATGCAT
TAAAAGTTAAAGGTCCGGACAACACAATAACATGCGAAGTTCAACAATTA
CTAGGAGATAATAAAGTTCGAGCTGTAGCTATGAGCTCAACTGAAGGTCT
TAAAAGAGGTATAGAAGTAACTGACACAGGAGCCCCTATTACAGTTCCGG
TTGGTATACCTACATTAGGTAGAATCTTCAATGTACTAGGTGAACCTGTA
GATAATCTGGGAAAAATCAAATCTGAAGACTCATTACCAATACATAGAGC
AGCTCCTTTATTCACTCAATTAGAAACAAAACCTTCTATTTTTGAAACTG
GTATTAAGGTTGTAGATTTAATTGCGCCATATAGAAAAGGCGGTAAAATA
GGCTTGTTTGGTGGAGCTGGTGTCGGTAAAACCGTACTTATAATGGAACT
AATCAATAATATCGCAAAAGCACATGGAGGTGTGTCCGTATTTGGAGGAG
TTGGAGAAAGAACGAGAGAAGGCAATGACTTATATGAAGAAATGAAAGAA
TCAAAAGTTATTAATGCAGATGACCTAAAAGAATCCAAAGTAGCATTAGT
ATATGGACAAATGAATGAACCACCAGGTGCAAGAATGCGAGTAGGCTTAA
CTGCATTAACTATGGCAGAATATTTTCGAGATATTAATAAACAAGACGTG
CTATTATTTATCGACAACATTTTTCGGTTTGTACAAGCTGGTTCTGAAGT
TTCAGCTTTATTAGGACGCATGCCATCTGCAGTTGGCTATCAACCAACAT
TAGCAACAGAAATGGGAACTCTACAAGAACGAATTACTTCTACAACAGAT
GGATCGATTACATCTATACAAGCTGTATATGTTCCAGCGGATGACTTAAC
TGACCCAGCTCCGGCAACAACATTTGCACATTTAGATGCAACAACTGTAC
TATCAAGAAGTTTAGCAGCTAAAGGCATTTATCCAGCAGTAGATCCTTTA
GGGTCTACATCAACTATGTTACAACCATCGATCGTAGGACAAAAACATTA
CTCTACAGCACAACAAATCAAATCGACTTTACAACGATATAAAGAATTAC
AAGATATTATAGCAATATTAGGTCTCGACGAATTATCAGAAGATGATAGA
TTAACCGTTGCTAGAGCAAGAAAAATAGAGAGATTTTTATCACAACCATT
CTTTGTTGCAGAAGTATTTACAGGATCTCCAGGAAAATATGTATCACTAG
AAGAATGCATAAAAGGCTTTAATATGATATTAAGTGGAGAACTAGACGAT
TTACCTGAACAAGCTTTTTACTTAGTAGGTAATATAGAAGAAGCTATAAG
TAAAGCAGAAAAGTTAAAATAA
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protein sequence of Ggra416.t1

>Ggra416.t1 ID=Ggra416.t1|Name=Ggra416.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MVSINNQGCVTQIIGPVLDIEFPNGQLPKVLNALKVKGPDNTITCEVQQL
LGDNKVRAVAMSSTEGLKRGIEVTDTGAPITVPVGIPTLGRIFNVLGEPV
DNLGKIKSEDSLPIHRAAPLFTQLETKPSIFETGIKVVDLIAPYRKGGKI
GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKE
SKVINADDLKESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDV
LLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGTLQERITSTTD
GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRSLAAKGIYPAVDPL
GSTSTMLQPSIVGQKHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDR
LTVARARKIERFLSQPFFVAEVFTGSPGKYVSLEECIKGFNMILSGELDD
LPEQAFYLVGNIEEAISKAEKLK*
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mRNA from alignment at tig00000928_pilon:112249..113670-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra416.t1 ID=Ggra416.t1|Name=Ggra416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000928_pilon:112249..113670- (Gracilaria gracilis GNS1m male)
ATGGTAAGTATAAATAATCAAGGATGCGTAACACAAATTATAGGACCTGT
ATTAGATATAGAATTTCCCAATGGTCAATTACCTAAAGTATTAAATGCAT
TAAAAGTTAAAGGTCCGGACAACACAATAACATGCGAAGTTCAACAATTA
CTAGGAGATAATAAAGTTCGAGCTGTAGCTATGAGCTCAACTGAAGGTCT
TAAAAGAGGTATAGAAGTAACTGACACAGGAGCCCCTATTACAGTTCCGG
TTGGTATACCTACATTAGGTAGAATCTTCAATGTACTAGGTGAACCTGTA
GATAATCTGGGAAAAATCAAATCTGAAGACTCATTACCAATACATAGAGC
AGCTCCTTTATTCACTCAATTAGAAACAAAACCTTCTATTTTTGAAACTG
GTATTAAGGTTGTAGATTTAATTGCGCCATATAGAAAAGGCGGTAAAATA
GGCTTGTTTGGTGGAGCTGGTGTCGGTAAAACCGTACTTATAATGGAACT
AATCAATAATATCGCAAAAGCACATGGAGGTGTGTCCGTATTTGGAGGAG
TTGGAGAAAGAACGAGAGAAGGCAATGACTTATATGAAGAAATGAAAGAA
TCAAAAGTTATTAATGCAGATGACCTAAAAGAATCCAAAGTAGCATTAGT
ATATGGACAAATGAATGAACCACCAGGTGCAAGAATGCGAGTAGGCTTAA
CTGCATTAACTATGGCAGAATATTTTCGAGATATTAATAAACAAGACGTG
CTATTATTTATCGACAACATTTTTCGGTTTGTACAAGCTGGTTCTGAAGT
TTCAGCTTTATTAGGACGCATGCCATCTGCAGTTGGCTATCAACCAACAT
TAGCAACAGAAATGGGAACTCTACAAGAACGAATTACTTCTACAACAGAT
GGATCGATTACATCTATACAAGCTGTATATGTTCCAGCGGATGACTTAAC
TGACCCAGCTCCGGCAACAACATTTGCACATTTAGATGCAACAACTGTAC
TATCAAGAAGTTTAGCAGCTAAAGGCATTTATCCAGCAGTAGATCCTTTA
GGGTCTACATCAACTATGTTACAACCATCGATCGTAGGACAAAAACATTA
CTCTACAGCACAACAAATCAAATCGACTTTACAACGATATAAAGAATTAC
AAGATATTATAGCAATATTAGGTCTCGACGAATTATCAGAAGATGATAGA
TTAACCGTTGCTAGAGCAAGAAAAATAGAGAGATTTTTATCACAACCATT
CTTTGTTGCAGAAGTATTTACAGGATCTCCAGGAAAATATGTATCACTAG
AAGAATGCATAAAAGGCTTTAATATGATATTAAGTGGAGAACTAGACGAT
TTACCTGAACAAGCTTTTTACTTAGTAGGTAATATAGAAGAAGCTATAAG
TAAAGCAGAAAAGTTAAAATAA
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Coding sequence (CDS) from alignment at tig00000928_pilon:112249..113670-

>Ggra416.t1 ID=Ggra416.t1|Name=Ggra416.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000928_pilon:112249..113670- (Gracilaria gracilis GNS1m male)
ATGGTAAGTATAAATAATCAAGGATGCGTAACACAAATTATAGGACCTGT
ATTAGATATAGAATTTCCCAATGGTCAATTACCTAAAGTATTAAATGCAT
TAAAAGTTAAAGGTCCGGACAACACAATAACATGCGAAGTTCAACAATTA
CTAGGAGATAATAAAGTTCGAGCTGTAGCTATGAGCTCAACTGAAGGTCT
TAAAAGAGGTATAGAAGTAACTGACACAGGAGCCCCTATTACAGTTCCGG
TTGGTATACCTACATTAGGTAGAATCTTCAATGTACTAGGTGAACCTGTA
GATAATCTGGGAAAAATCAAATCTGAAGACTCATTACCAATACATAGAGC
AGCTCCTTTATTCACTCAATTAGAAACAAAACCTTCTATTTTTGAAACTG
GTATTAAGGTTGTAGATTTAATTGCGCCATATAGAAAAGGCGGTAAAATA
GGCTTGTTTGGTGGAGCTGGTGTCGGTAAAACCGTACTTATAATGGAACT
AATCAATAATATCGCAAAAGCACATGGAGGTGTGTCCGTATTTGGAGGAG
TTGGAGAAAGAACGAGAGAAGGCAATGACTTATATGAAGAAATGAAAGAA
TCAAAAGTTATTAATGCAGATGACCTAAAAGAATCCAAAGTAGCATTAGT
ATATGGACAAATGAATGAACCACCAGGTGCAAGAATGCGAGTAGGCTTAA
CTGCATTAACTATGGCAGAATATTTTCGAGATATTAATAAACAAGACGTG
CTATTATTTATCGACAACATTTTTCGGTTTGTACAAGCTGGTTCTGAAGT
TTCAGCTTTATTAGGACGCATGCCATCTGCAGTTGGCTATCAACCAACAT
TAGCAACAGAAATGGGAACTCTACAAGAACGAATTACTTCTACAACAGAT
GGATCGATTACATCTATACAAGCTGTATATGTTCCAGCGGATGACTTAAC
TGACCCAGCTCCGGCAACAACATTTGCACATTTAGATGCAACAACTGTAC
TATCAAGAAGTTTAGCAGCTAAAGGCATTTATCCAGCAGTAGATCCTTTA
GGGTCTACATCAACTATGTTACAACCATCGATCGTAGGACAAAAACATTA
CTCTACAGCACAACAAATCAAATCGACTTTACAACGATATAAAGAATTAC
AAGATATTATAGCAATATTAGGTCTCGACGAATTATCAGAAGATGATAGA
TTAACCGTTGCTAGAGCAAGAAAAATAGAGAGATTTTTATCACAACCATT
CTTTGTTGCAGAAGTATTTACAGGATCTCCAGGAAAATATGTATCACTAG
AAGAATGCATAAAAGGCTTTAATATGATATTAAGTGGAGAACTAGACGAT
TTACCTGAACAAGCTTTTTACTTAGTAGGTAATATAGAAGAAGCTATAAG
TAAAGCAGAAAAGTTAAAATAA
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