Ggra4157.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4157.t1
Unique NameGgra4157.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:418589..419374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708199.1
Preferred nameISY1
PFAMsIsy1
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K12870
KEGG Pathwayko03040,ko04530,map03040,map04530
KEGG ModuleM00355
GOsGO:0000245,GO:0000350,GO:0000375,GO:0000377,GO:0000389,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0071008,GO:0071012,GO:0071013,GO:0071014,GO:0071020,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue1.9e-49
EggNOG OGsKOG3068@1|root,KOG3068@2759|Eukaryota
Descriptiongeneration of catalytic spliceosome for second transesterification step
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4157Ggra4157Gracilaria gracilis GNS1m malegenetig00000853_pilon 418589..419374 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4157.t1.start1Ggra4157.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 418589..418591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4157.t1.CDS1Ggra4157.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 418589..419374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4157.t1.exon1Ggra4157.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 418589..419374 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4157.t1.stop1Ggra4157.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 419372..419374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4157.t1Ggra4157.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 418589..419374 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4157.t1 ID=Ggra4157.t1|Name=Ggra4157.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MARNEEKAQSMLSRYLRSKQETSGSRQRRPYLSTLCDDVDEAEKWRLQVL
SDIRRLAEEIQNPGLDDERVRELNDNINKLIRERGHWERRIRFLGGRDYG
RKKVHIVDETVVEHNGYFYFGEAKRLPGVKELLAAKEQRRREALDDEGLQ
QRMKQLYNRVNDEYYGKKDEANDEELLEIEKNAEHDARASLIEEWEKQSS
RSKDEAWDDSYLKFIGQKVEDKFNEEERMQALTLERKKLEALEQLETGAL
HARSKRDNEQG*
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spliced messenger RNA

>Ggra4157.t1 ID=Ggra4157.t1|Name=Ggra4157.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000853_pilon:418589..419374+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCAACGAAGAAAAGGCTCAGTCTATGCTGAGTCGCTATCTTCG
CAGCAAGCAAGAGACATCCGGATCACGTCAGAGACGACCCTACCTGTCAA
CGCTCTGTGATGATGTCGATGAGGCCGAGAAATGGCGTTTACAGGTTCTA
AGTGACATCCGTCGACTGGCCGAAGAGATCCAGAACCCCGGGTTGGACGA
CGAGCGTGTGCGCGAACTGAATGATAACATCAACAAATTGATACGAGAAC
GAGGACACTGGGAAAGACGGATTCGATTCTTGGGGGGTAGAGATTATGGG
AGAAAGAAAGTTCACATCGTGGATGAGACTGTGGTCGAACATAATGGATA
CTTCTATTTTGGGGAGGCTAAACGGCTGCCTGGCGTTAAGGAATTGTTAG
CAGCCAAAGAGCAGCGACGACGGGAAGCGCTAGATGACGAGGGCCTGCAA
CAGAGAATGAAGCAGTTGTACAATCGCGTTAATGACGAATATTACGGAAA
GAAGGATGAAGCAAATGATGAAGAACTGCTCGAGATTGAGAAAAACGCCG
AGCATGACGCAAGAGCTAGTTTGATTGAAGAATGGGAGAAACAAAGTAGT
AGATCAAAAGATGAAGCTTGGGATGATAGCTATCTTAAATTTATAGGACA
GAAGGTTGAGGATAAGTTTAACGAAGAAGAAAGAATGCAAGCATTGACAC
TAGAAAGAAAGAAACTAGAAGCATTGGAACAACTTGAAACAGGAGCTTTA
CATGCTCGGAGCAAACGAGACAACGAACAGGGCTGA
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protein sequence of Ggra4157.t1

>Ggra4157.t1 ID=Ggra4157.t1|Name=Ggra4157.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MARNEEKAQSMLSRYLRSKQETSGSRQRRPYLSTLCDDVDEAEKWRLQVL
SDIRRLAEEIQNPGLDDERVRELNDNINKLIRERGHWERRIRFLGGRDYG
RKKVHIVDETVVEHNGYFYFGEAKRLPGVKELLAAKEQRRREALDDEGLQ
QRMKQLYNRVNDEYYGKKDEANDEELLEIEKNAEHDARASLIEEWEKQSS
RSKDEAWDDSYLKFIGQKVEDKFNEEERMQALTLERKKLEALEQLETGAL
HARSKRDNEQG*
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mRNA from alignment at tig00000853_pilon:418589..419374+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4157.t1 ID=Ggra4157.t1|Name=Ggra4157.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000853_pilon:418589..419374+ (Gracilaria gracilis GNS1m male)
ATGGCGCGCAACGAAGAAAAGGCTCAGTCTATGCTGAGTCGCTATCTTCG
CAGCAAGCAAGAGACATCCGGATCACGTCAGAGACGACCCTACCTGTCAA
CGCTCTGTGATGATGTCGATGAGGCCGAGAAATGGCGTTTACAGGTTCTA
AGTGACATCCGTCGACTGGCCGAAGAGATCCAGAACCCCGGGTTGGACGA
CGAGCGTGTGCGCGAACTGAATGATAACATCAACAAATTGATACGAGAAC
GAGGACACTGGGAAAGACGGATTCGATTCTTGGGGGGTAGAGATTATGGG
AGAAAGAAAGTTCACATCGTGGATGAGACTGTGGTCGAACATAATGGATA
CTTCTATTTTGGGGAGGCTAAACGGCTGCCTGGCGTTAAGGAATTGTTAG
CAGCCAAAGAGCAGCGACGACGGGAAGCGCTAGATGACGAGGGCCTGCAA
CAGAGAATGAAGCAGTTGTACAATCGCGTTAATGACGAATATTACGGAAA
GAAGGATGAAGCAAATGATGAAGAACTGCTCGAGATTGAGAAAAACGCCG
AGCATGACGCAAGAGCTAGTTTGATTGAAGAATGGGAGAAACAAAGTAGT
AGATCAAAAGATGAAGCTTGGGATGATAGCTATCTTAAATTTATAGGACA
GAAGGTTGAGGATAAGTTTAACGAAGAAGAAAGAATGCAAGCATTGACAC
TAGAAAGAAAGAAACTAGAAGCATTGGAACAACTTGAAACAGGAGCTTTA
CATGCTCGGAGCAAACGAGACAACGAACAGGGCTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:418589..419374+

>Ggra4157.t1 ID=Ggra4157.t1|Name=Ggra4157.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000853_pilon:418589..419374+ (Gracilaria gracilis GNS1m male)
ATGGCGCGCAACGAAGAAAAGGCTCAGTCTATGCTGAGTCGCTATCTTCG
CAGCAAGCAAGAGACATCCGGATCACGTCAGAGACGACCCTACCTGTCAA
CGCTCTGTGATGATGTCGATGAGGCCGAGAAATGGCGTTTACAGGTTCTA
AGTGACATCCGTCGACTGGCCGAAGAGATCCAGAACCCCGGGTTGGACGA
CGAGCGTGTGCGCGAACTGAATGATAACATCAACAAATTGATACGAGAAC
GAGGACACTGGGAAAGACGGATTCGATTCTTGGGGGGTAGAGATTATGGG
AGAAAGAAAGTTCACATCGTGGATGAGACTGTGGTCGAACATAATGGATA
CTTCTATTTTGGGGAGGCTAAACGGCTGCCTGGCGTTAAGGAATTGTTAG
CAGCCAAAGAGCAGCGACGACGGGAAGCGCTAGATGACGAGGGCCTGCAA
CAGAGAATGAAGCAGTTGTACAATCGCGTTAATGACGAATATTACGGAAA
GAAGGATGAAGCAAATGATGAAGAACTGCTCGAGATTGAGAAAAACGCCG
AGCATGACGCAAGAGCTAGTTTGATTGAAGAATGGGAGAAACAAAGTAGT
AGATCAAAAGATGAAGCTTGGGATGATAGCTATCTTAAATTTATAGGACA
GAAGGTTGAGGATAAGTTTAACGAAGAAGAAAGAATGCAAGCATTGACAC
TAGAAAGAAAGAAACTAGAAGCATTGGAACAACTTGAAACAGGAGCTTTA
CATGCTCGGAGCAAACGAGACAACGAACAGGGCTGA
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