Ggra4138.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4138.t1
Unique NameGgra4138.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:301738..302840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708330.1
PFAMsDUF647
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0010224,GO:0031967,GO:0031975,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
Evalue5.06e-67
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Descriptionresponse to UV-B
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4138Ggra4138Gracilaria gracilis GNS1m malegenetig00000853_pilon 301738..302840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4138.t1Ggra4138.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 301738..302840 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4138.t1.start1Ggra4138.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 301738..301740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4138.t1.CDS1Ggra4138.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 301738..301751 +
Ggra4138.t1.CDS2Ggra4138.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 301841..302353 +
Ggra4138.t1.CDS3Ggra4138.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 302483..302840 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4138.t1.exon1Ggra4138.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 301738..301751 +
Ggra4138.t1.exon2Ggra4138.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 301841..302353 +
Ggra4138.t1.exon3Ggra4138.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 302483..302840 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4138.t1.intron1Ggra4138.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 301752..301840 +
Ggra4138.t1.intron2Ggra4138.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 302354..302482 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4138.t1.stop1Ggra4138.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 302838..302840 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4138.t1 ID=Ggra4138.t1|Name=Ggra4138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MSAISTEALLFGLGLGKTVAASAAATSWVLKNGASYIAKILYGSVFWSKF
DDDPKSWRIAADIVEDVGGAIEILTPLFPLNYFLPLASLAVCLKGMSLMT
RTATRHVVYRSLAASGMQNTGDIATKGESQGVTMKMLGLGLGIVISSRIG
QKYYVLLGAYGLLALVHISANWRSVQGYQSSVKLGAGVAESVTIPADLAQ
AKKLFRKERFMIFATDGGDTIKVLLKDTAKPTDVLRAYYTAKQLKRIKSN
SKQALTESLKHMQKNVDSFMKETATAGWDTRHMLLADDTVRIAW*
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spliced messenger RNA

>Ggra4138.t1 ID=Ggra4138.t1|Name=Ggra4138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000853_pilon:301738..302840+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCCATCAGTACGGAGGCATTGTTGTTCGGTCTAGGACTTGGCAA
AACGGTTGCAGCTAGTGCTGCTGCAACGAGCTGGGTACTAAAGAATGGTG
CTTCATACATTGCGAAGATTTTGTACGGAAGTGTCTTCTGGTCAAAGTTT
GACGACGACCCTAAGAGTTGGAGAATTGCTGCTGATATTGTCGAAGATGT
TGGCGGCGCCATAGAAATTTTGACACCCTTGTTTCCTCTTAACTACTTTT
TACCTCTGGCGTCTCTAGCAGTTTGTCTCAAAGGCATGTCATTGATGACG
AGAACGGCCACACGCCATGTGGTATATCGCTCTCTTGCTGCGAGTGGGAT
GCAAAATACTGGGGATATTGCTACGAAAGGAGAATCGCAGGGAGTTACAA
TGAAAATGCTTGGTCTTGGTTTAGGAATTGTTATTTCGTCAAGAATTGGT
CAAAAGTACTATGTTCTACTTGGGGCGTATGGTCTACTTGCGCTTGTTCA
TATTTCCGCGAACTGGAGATCGGTCCAGGGCTATCAGTCGTCTGTCAAGC
TGGGTGCAGGTGTGGCTGAATCTGTAACCATACCTGCGGACCTAGCACAA
GCAAAAAAACTGTTCAGGAAAGAGCGCTTTATGATCTTTGCTACTGATGG
CGGAGACACTATAAAAGTACTGCTGAAGGACACTGCAAAACCTACTGATG
TTCTGCGGGCTTATTACACCGCAAAACAGTTGAAGAGGATAAAGAGTAAT
TCAAAGCAAGCTCTAACAGAGTCACTGAAGCATATGCAGAAGAACGTAGA
CTCGTTCATGAAGGAAACAGCTACAGCGGGTTGGGATACTCGGCACATGC
TGCTAGCAGATGACACGGTTAGAATAGCATGGTAA
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protein sequence of Ggra4138.t1

>Ggra4138.t1 ID=Ggra4138.t1|Name=Ggra4138.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MSAISTEALLFGLGLGKTVAASAAATSWVLKNGASYIAKILYGSVFWSKF
DDDPKSWRIAADIVEDVGGAIEILTPLFPLNYFLPLASLAVCLKGMSLMT
RTATRHVVYRSLAASGMQNTGDIATKGESQGVTMKMLGLGLGIVISSRIG
QKYYVLLGAYGLLALVHISANWRSVQGYQSSVKLGAGVAESVTIPADLAQ
AKKLFRKERFMIFATDGGDTIKVLLKDTAKPTDVLRAYYTAKQLKRIKSN
SKQALTESLKHMQKNVDSFMKETATAGWDTRHMLLADDTVRIAW*
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mRNA from alignment at tig00000853_pilon:301738..302840+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4138.t1 ID=Ggra4138.t1|Name=Ggra4138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1103bp|location=Sequence derived from alignment at tig00000853_pilon:301738..302840+ (Gracilaria gracilis GNS1m male)
ATGTCAGCCATCAGGTAAGGCCTTGTTCAGGATTTCTTCTTCGCTGAATA
AGGTTCAACGTATTCTTGCTAACAGGAACATGATTTTCTCGTTAATTCCC
AAGTACGGAGGCATTGTTGTTCGGTCTAGGACTTGGCAAAACGGTTGCAG
CTAGTGCTGCTGCAACGAGCTGGGTACTAAAGAATGGTGCTTCATACATT
GCGAAGATTTTGTACGGAAGTGTCTTCTGGTCAAAGTTTGACGACGACCC
TAAGAGTTGGAGAATTGCTGCTGATATTGTCGAAGATGTTGGCGGCGCCA
TAGAAATTTTGACACCCTTGTTTCCTCTTAACTACTTTTTACCTCTGGCG
TCTCTAGCAGTTTGTCTCAAAGGCATGTCATTGATGACGAGAACGGCCAC
ACGCCATGTGGTATATCGCTCTCTTGCTGCGAGTGGGATGCAAAATACTG
GGGATATTGCTACGAAAGGAGAATCGCAGGGAGTTACAATGAAAATGCTT
GGTCTTGGTTTAGGAATTGTTATTTCGTCAAGAATTGGTCAAAAGTACTA
TGTTCTACTTGGGGCGTATGGTCTACTTGCGCTTGTTCATATTTCCGCGA
ACTGGAGATCGGTCCAGTGTGTGCAATTTTCTTTCTTCAACAGGCAAAGA
GCATCTATTCTGATCGACAGTCACCTGGATCGTTCGAAGATGCCCACTCC
GTGAGATGTTTATTCCATCGAGCGGATTATTTTGCCGCCTTGGAGGGGCT
ATCAGTCGTCTGTCAAGCTGGGTGCAGGTGTGGCTGAATCTGTAACCATA
CCTGCGGACCTAGCACAAGCAAAAAAACTGTTCAGGAAAGAGCGCTTTAT
GATCTTTGCTACTGATGGCGGAGACACTATAAAAGTACTGCTGAAGGACA
CTGCAAAACCTACTGATGTTCTGCGGGCTTATTACACCGCAAAACAGTTG
AAGAGGATAAAGAGTAATTCAAAGCAAGCTCTAACAGAGTCACTGAAGCA
TATGCAGAAGAACGTAGACTCGTTCATGAAGGAAACAGCTACAGCGGGTT
GGGATACTCGGCACATGCTGCTAGCAGATGACACGGTTAGAATAGCATGG
TAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:301738..302840+

>Ggra4138.t1 ID=Ggra4138.t1|Name=Ggra4138.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000853_pilon:301738..302840+ (Gracilaria gracilis GNS1m male)
ATGTCAGCCATCAGTACGGAGGCATTGTTGTTCGGTCTAGGACTTGGCAA
AACGGTTGCAGCTAGTGCTGCTGCAACGAGCTGGGTACTAAAGAATGGTG
CTTCATACATTGCGAAGATTTTGTACGGAAGTGTCTTCTGGTCAAAGTTT
GACGACGACCCTAAGAGTTGGAGAATTGCTGCTGATATTGTCGAAGATGT
TGGCGGCGCCATAGAAATTTTGACACCCTTGTTTCCTCTTAACTACTTTT
TACCTCTGGCGTCTCTAGCAGTTTGTCTCAAAGGCATGTCATTGATGACG
AGAACGGCCACACGCCATGTGGTATATCGCTCTCTTGCTGCGAGTGGGAT
GCAAAATACTGGGGATATTGCTACGAAAGGAGAATCGCAGGGAGTTACAA
TGAAAATGCTTGGTCTTGGTTTAGGAATTGTTATTTCGTCAAGAATTGGT
CAAAAGTACTATGTTCTACTTGGGGCGTATGGTCTACTTGCGCTTGTTCA
TATTTCCGCGAACTGGAGATCGGTCCAGGGCTATCAGTCGTCTGTCAAGC
TGGGTGCAGGTGTGGCTGAATCTGTAACCATACCTGCGGACCTAGCACAA
GCAAAAAAACTGTTCAGGAAAGAGCGCTTTATGATCTTTGCTACTGATGG
CGGAGACACTATAAAAGTACTGCTGAAGGACACTGCAAAACCTACTGATG
TTCTGCGGGCTTATTACACCGCAAAACAGTTGAAGAGGATAAAGAGTAAT
TCAAAGCAAGCTCTAACAGAGTCACTGAAGCATATGCAGAAGAACGTAGA
CTCGTTCATGAAGGAAACAGCTACAGCGGGTTGGGATACTCGGCACATGC
TGCTAGCAGATGACACGGTTAGAATAGCATGGTAA
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