Ggra4136.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4136.t1
Unique NameGgra4136.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:290011..291607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709130.1
Preferred namePNPLA8
PFAMsPatatin
Max annot lvl2759|Eukaryota
KEGG koko:K16815
GOsGO:0000166,GO:0001516,GO:0001676,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006690,GO:0006692,GO:0006693,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009987,GO:0010876,GO:0012505,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016053,GO:0016298,GO:0016787,GO:0016788,GO:0017076,GO:0019369,GO:0019637,GO:0019752,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032309,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033559,GO:0034638,GO:0035639,GO:0036094,GO:0036151,GO:0036152,GO:0042175,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046338,GO:0046394,GO:0046434,GO:0046456,GO:0046457,GO:0046470,GO:0046475,GO:0046486,GO:0046503,GO:0046717,GO:0046903,GO:0046942,GO:0047499,GO:0050482,GO:0051179,GO:0051234,GO:0052689,GO:0071702,GO:0071704,GO:0071715,GO:0072330,GO:0097159,GO:0097164,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901571,GO:1901575,GO:1901576,GO:1903963
Evalue1.2e-35
EggNOG OGsKOG4231@1|root,KOG4231@2759|Eukaryota
Descriptionphosphatidylethanolamine catabolic process
COG categoryU
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4136Ggra4136Gracilaria gracilis GNS1m malegenetig00000853_pilon 290011..291607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4136.t1Ggra4136.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 290011..291607 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4136.t1.stop1Ggra4136.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 290011..290013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4136.t1.CDS1Ggra4136.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 290011..290307 -
Ggra4136.t1.CDS2Ggra4136.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 290624..290879 -
Ggra4136.t1.CDS3Ggra4136.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 291057..291607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4136.t1.exon1Ggra4136.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 290011..290307 -
Ggra4136.t1.exon2Ggra4136.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 290624..290879 -
Ggra4136.t1.exon3Ggra4136.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 291057..291607 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4136.t1.intron1Ggra4136.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 290308..290623 -
Ggra4136.t1.intron2Ggra4136.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 290880..291056 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4136.t1.start1Ggra4136.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 291605..291607 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4136.t1 ID=Ggra4136.t1|Name=Ggra4136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MSTPVLPVQKRRCCPEPETPRACVQRAQIYDIMVLYEFGCEEIRRREEVS
DEHVVALLPYDRQRKVLDEIVSSKQVKFGQDKDGVEETDDANGVLMNGLR
GVAGNAVRLVTFRDVSNGKAANEDCVSAAGYAAPVEHESHMTVDAKVGTS
AASAYALQQRWRHQILYQTGTNQNWLNLRLLLQRSLALKMGVRQEARKVM
ALRERAYYGPYSFSWRNNERRARRYSAGGAEALGAIGVNKWRPIMPGQRG
LRIVCIHGGGTFAIMALATLKQLNRITGREIHEMLDIIRNMTTGAIVAAS
IGIVHKTVDEVEMLYRDMIEKIFANPPATGPKMLLTRAYYDTNVLESALK
HECGKGIFESMAEYNMN*
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spliced messenger RNA

>Ggra4136.t1 ID=Ggra4136.t1|Name=Ggra4136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000853_pilon:290011..291607- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACACCGGTGCTTCCAGTGCAGAAGCGTCGTTGTTGTCCGGAACC
TGAAACGCCGAGAGCATGTGTGCAACGAGCCCAAATCTATGATATTATGG
TATTATATGAGTTCGGTTGCGAAGAAATTCGACGGCGGGAAGAAGTCAGT
GATGAACACGTTGTGGCTCTCCTCCCCTATGATCGTCAGAGAAAGGTCCT
TGACGAAATCGTATCCAGCAAACAAGTCAAATTTGGACAGGACAAAGATG
GGGTCGAAGAGACGGATGATGCTAACGGTGTGTTGATGAATGGCCTACGC
GGGGTTGCGGGGAATGCTGTAAGACTGGTCACGTTTCGAGACGTAAGCAA
CGGTAAAGCGGCAAACGAAGATTGCGTTTCGGCAGCAGGATATGCTGCGC
CTGTGGAGCACGAGAGCCACATGACCGTTGATGCGAAAGTGGGAACCTCT
GCGGCTTCTGCGTATGCGCTGCAGCAGCGATGGCGACATCAGATTTTGTA
TCAAACCGGAACGAATCAGAATTGGTTGAACTTAAGGCTGCTGTTGCAGC
GATCTCTGGCATTGAAAATGGGTGTAAGACAAGAAGCAAGGAAGGTGATG
GCATTGCGAGAAAGAGCTTATTACGGGCCTTACTCGTTTTCCTGGCGGAA
TAATGAACGGAGAGCCCGAAGGTACAGCGCGGGCGGCGCGGAAGCACTTG
GTGCGATTGGTGTGAACAAGTGGAGACCAATAATGCCCGGCCAGAGGGGC
TTACGTATTGTGTGCATTCATGGTGGTGGTACTTTTGCAATCATGGCGCT
CGCAACTCTTAAACAGCTCAATAGAATCACAGGTCGTGAGATTCATGAGA
TGTTGGACATCATTCGCAATATGACCACGGGTGCAATTGTGGCAGCTTCT
ATCGGTATTGTTCATAAAACGGTCGACGAGGTCGAAATGCTGTATAGAGA
CATGATTGAGAAGATATTTGCAAATCCCCCGGCGACCGGTCCTAAGATGT
TGCTGACACGTGCATACTACGATACAAATGTACTAGAATCAGCTCTGAAG
CACGAGTGTGGAAAAGGCATCTTCGAGTCTATGGCTGAATACAACATGAA
TTGA
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protein sequence of Ggra4136.t1

>Ggra4136.t1 ID=Ggra4136.t1|Name=Ggra4136.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MSTPVLPVQKRRCCPEPETPRACVQRAQIYDIMVLYEFGCEEIRRREEVS
DEHVVALLPYDRQRKVLDEIVSSKQVKFGQDKDGVEETDDANGVLMNGLR
GVAGNAVRLVTFRDVSNGKAANEDCVSAAGYAAPVEHESHMTVDAKVGTS
AASAYALQQRWRHQILYQTGTNQNWLNLRLLLQRSLALKMGVRQEARKVM
ALRERAYYGPYSFSWRNNERRARRYSAGGAEALGAIGVNKWRPIMPGQRG
LRIVCIHGGGTFAIMALATLKQLNRITGREIHEMLDIIRNMTTGAIVAAS
IGIVHKTVDEVEMLYRDMIEKIFANPPATGPKMLLTRAYYDTNVLESALK
HECGKGIFESMAEYNMN*
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mRNA from alignment at tig00000853_pilon:290011..291607-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4136.t1 ID=Ggra4136.t1|Name=Ggra4136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1597bp|location=Sequence derived from alignment at tig00000853_pilon:290011..291607- (Gracilaria gracilis GNS1m male)
ATGTCCACACCGGTGCTTCCAGTGCAGAAGCGTCGTTGTTGTCCGGAACC
TGAAACGCCGAGAGCATGTGTGCAACGAGCCCAAATCTATGATATTATGG
TATTATATGAGTTCGGTTGCGAAGAAATTCGACGGCGGGAAGAAGTCAGT
GATGAACACGTTGTGGCTCTCCTCCCCTATGATCGTCAGAGAAAGGTCCT
TGACGAAATCGTATCCAGCAAACAAGTCAAATTTGGACAGGACAAAGATG
GGGTCGAAGAGACGGATGATGCTAACGGTGTGTTGATGAATGGCCTACGC
GGGGTTGCGGGGAATGCTGTAAGACTGGTCACGTTTCGAGACGTAAGCAA
CGGTAAAGCGGCAAACGAAGATTGCGTTTCGGCAGCAGGATATGCTGCGC
CTGTGGAGCACGAGAGCCACATGACCGTTGATGCGAAAGTGGGAACCTCT
GCGGCTTCTGCGTATGCGCTGCAGCAGCGATGGCGACATCAGATTTTGTA
TCAAACCGGAACGAATCAGAATTGGTTGAACTTAAGGCTGCTGTTGCAGC
GGTACGTGAAGCAACGGCGTAGACTGCGCTGGCCAATCTAGCCATCATTG
TGCCGAAGTCACGCACTGCTATCCTGAACTTTATTGGAAACATTGTTCAG
GACTTATCCAATATCATTCACTAGTCAGGTTGCTTTCGGTCACAGGCTGT
GAGAGGTCTCCGGCACCCACCTGCTTAGATCTCTGGCATTGAAAATGGGT
GTAAGACAAGAAGCAAGGAAGGTGATGGCATTGCGAGAAAGAGCTTATTA
CGGGCCTTACTCGTTTTCCTGGCGGAATAATGAACGGAGAGCCCGAAGGT
ACAGCGCGGGCGGCGCGGAAGCACTTGGTGCGATTGGTGTGAACAAGTGG
AGACCAATAATGCCCGGCCAGAGGGGCTTACGTATTGTGTGCATTCATGG
TGGTGGTACTTTTGCAATCATGGCGCTCGCAACTGTACGTGTTCTCCGGA
ACACGTATTTTCCAGGGAACTCAGATCAAGCCTGTGTTCCAATTGAAAGT
AATCTTATGCATTATGTGTAAGGTTTACTAACAATGGGATCATCCAAAAA
TGGTCACTTCGGCACTTGCCAAAGTGTCGGGGTGCAGCCGGTCTTTCATA
CCCGCTGCAGAACGGCAGAGTAGGGAGACCTCCCAACAAATTCACTTCCA
GTCTTCGGCAGGCGGATGGCTCAAACGTATGTGGAGTGCAGCAGTGATCA
ATTCTTGGATGATCCCAATATCTCACGTTCTGCGTCGTTGGTATTTGCAG
CTTAAACAGCTCAATAGAATCACAGGTCGTGAGATTCATGAGATGTTGGA
CATCATTCGCAATATGACCACGGGTGCAATTGTGGCAGCTTCTATCGGTA
TTGTTCATAAAACGGTCGACGAGGTCGAAATGCTGTATAGAGACATGATT
GAGAAGATATTTGCAAATCCCCCGGCGACCGGTCCTAAGATGTTGCTGAC
ACGTGCATACTACGATACAAATGTACTAGAATCAGCTCTGAAGCACGAGT
GTGGAAAAGGCATCTTCGAGTCTATGGCTGAATACAACATGAATTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:290011..291607-

>Ggra4136.t1 ID=Ggra4136.t1|Name=Ggra4136.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000853_pilon:290011..291607- (Gracilaria gracilis GNS1m male)
ATGTCCACACCGGTGCTTCCAGTGCAGAAGCGTCGTTGTTGTCCGGAACC
TGAAACGCCGAGAGCATGTGTGCAACGAGCCCAAATCTATGATATTATGG
TATTATATGAGTTCGGTTGCGAAGAAATTCGACGGCGGGAAGAAGTCAGT
GATGAACACGTTGTGGCTCTCCTCCCCTATGATCGTCAGAGAAAGGTCCT
TGACGAAATCGTATCCAGCAAACAAGTCAAATTTGGACAGGACAAAGATG
GGGTCGAAGAGACGGATGATGCTAACGGTGTGTTGATGAATGGCCTACGC
GGGGTTGCGGGGAATGCTGTAAGACTGGTCACGTTTCGAGACGTAAGCAA
CGGTAAAGCGGCAAACGAAGATTGCGTTTCGGCAGCAGGATATGCTGCGC
CTGTGGAGCACGAGAGCCACATGACCGTTGATGCGAAAGTGGGAACCTCT
GCGGCTTCTGCGTATGCGCTGCAGCAGCGATGGCGACATCAGATTTTGTA
TCAAACCGGAACGAATCAGAATTGGTTGAACTTAAGGCTGCTGTTGCAGC
GATCTCTGGCATTGAAAATGGGTGTAAGACAAGAAGCAAGGAAGGTGATG
GCATTGCGAGAAAGAGCTTATTACGGGCCTTACTCGTTTTCCTGGCGGAA
TAATGAACGGAGAGCCCGAAGGTACAGCGCGGGCGGCGCGGAAGCACTTG
GTGCGATTGGTGTGAACAAGTGGAGACCAATAATGCCCGGCCAGAGGGGC
TTACGTATTGTGTGCATTCATGGTGGTGGTACTTTTGCAATCATGGCGCT
CGCAACTCTTAAACAGCTCAATAGAATCACAGGTCGTGAGATTCATGAGA
TGTTGGACATCATTCGCAATATGACCACGGGTGCAATTGTGGCAGCTTCT
ATCGGTATTGTTCATAAAACGGTCGACGAGGTCGAAATGCTGTATAGAGA
CATGATTGAGAAGATATTTGCAAATCCCCCGGCGACCGGTCCTAAGATGT
TGCTGACACGTGCATACTACGATACAAATGTACTAGAATCAGCTCTGAAG
CACGAGTGTGGAAAAGGCATCTTCGAGTCTATGGCTGAATACAACATGAA
TTGA
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