Ggra4134.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4134.t1
Unique NameGgra4134.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length575
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:263560..265284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702759.1
Preferred nameETFDH
PFAMsETF_QO,FAD_binding_2,NAD_binding_8
Max annot lvl2759|Eukaryota
KEGG koko:K00311
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006082,GO:0006091,GO:0006116,GO:0006119,GO:0006139,GO:0006163,GO:0006520,GO:0006551,GO:0006552,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009646,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016042,GO:0016054,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0017144,GO:0019362,GO:0019395,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0030258,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032787,GO:0032991,GO:0033539,GO:0034440,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043783,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0046034,GO:0046395,GO:0046483,GO:0046496,GO:0048037,GO:0048038,GO:0048039,GO:0050660,GO:0050662,GO:0050896,GO:0051186,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072521,GO:0072524,GO:0097159,GO:0098573,GO:0098798,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204
Evalue8.76e-268
EggNOG OGsCOG2440@1|root,KOG2415@2759|Eukaryota
EC1.5.5.1
Descriptionoxidoreductase activity, oxidizing metal ions with flavin as acceptor
COG categoryC
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4134Ggra4134Gracilaria gracilis GNS1m malegenetig00000853_pilon 263560..265284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4134.t1.stop1Ggra4134.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 263560..263562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4134.t1.CDS1Ggra4134.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 263560..265284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4134.t1.exon1Ggra4134.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 263560..265284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4134.t1.start1Ggra4134.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 265282..265284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4134.t1Ggra4134.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 263560..265284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4134.t1 ID=Ggra4134.t1|Name=Ggra4134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=575bp
MLKFLLPQFRKSGSISQLLRSRLQSASYSSVASGERERLEYDVVIVGAGP
AGLSAAIQLRQLCDRADKDLSVCVLEKGSEVGAHILSGNVFEPRAMDELL
PNWRDMDAPLGIGAAEDEFFYLTKSSAFRLPTPPQMNNHGNYVISLSQMT
RWLGEKAEELGVEIYPGFAAAHLMFSDEGSVCGVTTNDFGIAKDGSRKEN
YEPGIDIAARVTLLAEGCRGSLSKQAIERFQLDQRAMPQTYALGLKEVWR
ISKEMHRPGRIVHTIGYPMDIQTYGGSFLYHMADEMLAVGYVVALDYRNP
FLSPYQEFQRFKSHSTIRPLLESGEVLQYGARALNEGGVQSIPNLEFPGG
ALIGCSAGFLNVPKIKGTHTAQKSGMIAADVIFNNYAEDGISTQGYHDAM
KKSWVWKELEAVRNIRPGFKYGLLGGLANAALETYITRGRSPWTLAHSKP
DNEATDSLSKHKPINYPKPDGKVTFDILTAVSLSGTNHDHDEPCHLVLEN
ENVPEKVNLPEYGGPEGRYCPARVYEYVEDGEDQKLQINAQNCLHCKACD
IKDPTQNITWTVPQGGGGPKYTMT*
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spliced messenger RNA

>Ggra4134.t1 ID=Ggra4134.t1|Name=Ggra4134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000853_pilon:263560..265284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAAGTTTCTTCTCCCGCAATTCCGGAAGTCTGGGTCAATATCCCA
ACTGTTGCGATCACGGCTGCAGTCCGCCTCGTATTCATCTGTGGCGTCGG
GCGAAAGGGAAAGACTAGAGTATGACGTCGTCATCGTCGGTGCTGGTCCC
GCCGGGCTTTCCGCCGCTATTCAGTTGCGTCAATTGTGTGATCGTGCAGA
CAAGGATTTATCGGTGTGTGTACTGGAAAAGGGCAGTGAGGTAGGCGCTC
ATATTTTGTCTGGTAATGTATTTGAACCTCGCGCCATGGATGAGCTGCTT
CCAAACTGGCGAGATATGGATGCACCGCTGGGCATCGGTGCTGCTGAGGA
TGAGTTCTTTTACTTAACAAAGTCTTCTGCGTTTCGGCTTCCAACACCCC
CGCAGATGAATAACCACGGAAACTATGTGATCTCGTTATCACAAATGACA
AGATGGCTAGGAGAAAAAGCAGAAGAGTTAGGAGTAGAGATATATCCAGG
TTTCGCTGCAGCTCACCTAATGTTTTCTGATGAAGGTTCTGTGTGCGGGG
TAACTACCAATGATTTCGGTATTGCCAAGGATGGTTCGAGAAAGGAAAAT
TATGAACCAGGAATAGATATTGCTGCAAGGGTTACACTTTTGGCCGAGGG
CTGCCGTGGATCTTTATCGAAACAAGCAATTGAAAGATTCCAATTGGACC
AGCGAGCAATGCCCCAAACATATGCTCTTGGTCTCAAGGAAGTATGGCGC
ATATCCAAAGAGATGCATAGGCCCGGAAGGATTGTACATACGATCGGGTA
TCCCATGGATATTCAAACATATGGGGGGTCATTCTTGTATCATATGGCTG
ATGAGATGCTCGCAGTTGGTTATGTCGTAGCTCTAGATTATCGAAACCCT
TTTCTATCCCCATATCAAGAATTCCAACGCTTTAAGTCGCATTCAACTAT
ACGACCTCTCCTGGAGAGTGGTGAAGTTTTGCAGTACGGAGCGAGAGCTT
TGAACGAAGGGGGAGTGCAGTCAATTCCGAACCTTGAATTTCCTGGAGGA
GCATTGATCGGATGCTCAGCTGGGTTTTTAAACGTGCCGAAGATAAAGGG
AACTCATACTGCTCAAAAAAGTGGAATGATTGCGGCAGATGTAATCTTCA
ATAATTATGCAGAAGATGGAATATCCACCCAGGGATATCATGACGCAATG
AAGAAGTCGTGGGTCTGGAAAGAATTAGAAGCTGTGAGGAACATACGTCC
TGGCTTTAAGTACGGCTTACTTGGGGGGCTTGCGAACGCTGCTCTTGAAA
CATATATTACTAGAGGTCGATCCCCGTGGACTCTTGCCCATTCTAAACCG
GATAATGAAGCAACTGACTCTCTCTCCAAGCATAAACCCATAAACTACCC
TAAACCGGACGGCAAGGTAACTTTTGACATATTAACCGCAGTGTCTCTGA
GTGGAACGAATCATGACCATGACGAACCATGTCATCTTGTGTTAGAGAAT
GAAAACGTTCCCGAGAAGGTCAATCTGCCCGAGTATGGAGGACCAGAAGG
TCGATACTGTCCAGCTCGAGTTTATGAGTACGTTGAAGATGGTGAGGATC
AAAAACTGCAAATCAATGCACAAAACTGTCTTCACTGCAAGGCTTGCGAT
ATTAAGGATCCGACGCAAAACATTACATGGACTGTGCCACAGGGGGGAGG
AGGACCAAAATACACCATGACGTAA
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protein sequence of Ggra4134.t1

>Ggra4134.t1 ID=Ggra4134.t1|Name=Ggra4134.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=575bp
MLKFLLPQFRKSGSISQLLRSRLQSASYSSVASGERERLEYDVVIVGAGP
AGLSAAIQLRQLCDRADKDLSVCVLEKGSEVGAHILSGNVFEPRAMDELL
PNWRDMDAPLGIGAAEDEFFYLTKSSAFRLPTPPQMNNHGNYVISLSQMT
RWLGEKAEELGVEIYPGFAAAHLMFSDEGSVCGVTTNDFGIAKDGSRKEN
YEPGIDIAARVTLLAEGCRGSLSKQAIERFQLDQRAMPQTYALGLKEVWR
ISKEMHRPGRIVHTIGYPMDIQTYGGSFLYHMADEMLAVGYVVALDYRNP
FLSPYQEFQRFKSHSTIRPLLESGEVLQYGARALNEGGVQSIPNLEFPGG
ALIGCSAGFLNVPKIKGTHTAQKSGMIAADVIFNNYAEDGISTQGYHDAM
KKSWVWKELEAVRNIRPGFKYGLLGGLANAALETYITRGRSPWTLAHSKP
DNEATDSLSKHKPINYPKPDGKVTFDILTAVSLSGTNHDHDEPCHLVLEN
ENVPEKVNLPEYGGPEGRYCPARVYEYVEDGEDQKLQINAQNCLHCKACD
IKDPTQNITWTVPQGGGGPKYTMT*
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mRNA from alignment at tig00000853_pilon:263560..265284-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4134.t1 ID=Ggra4134.t1|Name=Ggra4134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000853_pilon:263560..265284- (Gracilaria gracilis GNS1m male)
ATGTTGAAGTTTCTTCTCCCGCAATTCCGGAAGTCTGGGTCAATATCCCA
ACTGTTGCGATCACGGCTGCAGTCCGCCTCGTATTCATCTGTGGCGTCGG
GCGAAAGGGAAAGACTAGAGTATGACGTCGTCATCGTCGGTGCTGGTCCC
GCCGGGCTTTCCGCCGCTATTCAGTTGCGTCAATTGTGTGATCGTGCAGA
CAAGGATTTATCGGTGTGTGTACTGGAAAAGGGCAGTGAGGTAGGCGCTC
ATATTTTGTCTGGTAATGTATTTGAACCTCGCGCCATGGATGAGCTGCTT
CCAAACTGGCGAGATATGGATGCACCGCTGGGCATCGGTGCTGCTGAGGA
TGAGTTCTTTTACTTAACAAAGTCTTCTGCGTTTCGGCTTCCAACACCCC
CGCAGATGAATAACCACGGAAACTATGTGATCTCGTTATCACAAATGACA
AGATGGCTAGGAGAAAAAGCAGAAGAGTTAGGAGTAGAGATATATCCAGG
TTTCGCTGCAGCTCACCTAATGTTTTCTGATGAAGGTTCTGTGTGCGGGG
TAACTACCAATGATTTCGGTATTGCCAAGGATGGTTCGAGAAAGGAAAAT
TATGAACCAGGAATAGATATTGCTGCAAGGGTTACACTTTTGGCCGAGGG
CTGCCGTGGATCTTTATCGAAACAAGCAATTGAAAGATTCCAATTGGACC
AGCGAGCAATGCCCCAAACATATGCTCTTGGTCTCAAGGAAGTATGGCGC
ATATCCAAAGAGATGCATAGGCCCGGAAGGATTGTACATACGATCGGGTA
TCCCATGGATATTCAAACATATGGGGGGTCATTCTTGTATCATATGGCTG
ATGAGATGCTCGCAGTTGGTTATGTCGTAGCTCTAGATTATCGAAACCCT
TTTCTATCCCCATATCAAGAATTCCAACGCTTTAAGTCGCATTCAACTAT
ACGACCTCTCCTGGAGAGTGGTGAAGTTTTGCAGTACGGAGCGAGAGCTT
TGAACGAAGGGGGAGTGCAGTCAATTCCGAACCTTGAATTTCCTGGAGGA
GCATTGATCGGATGCTCAGCTGGGTTTTTAAACGTGCCGAAGATAAAGGG
AACTCATACTGCTCAAAAAAGTGGAATGATTGCGGCAGATGTAATCTTCA
ATAATTATGCAGAAGATGGAATATCCACCCAGGGATATCATGACGCAATG
AAGAAGTCGTGGGTCTGGAAAGAATTAGAAGCTGTGAGGAACATACGTCC
TGGCTTTAAGTACGGCTTACTTGGGGGGCTTGCGAACGCTGCTCTTGAAA
CATATATTACTAGAGGTCGATCCCCGTGGACTCTTGCCCATTCTAAACCG
GATAATGAAGCAACTGACTCTCTCTCCAAGCATAAACCCATAAACTACCC
TAAACCGGACGGCAAGGTAACTTTTGACATATTAACCGCAGTGTCTCTGA
GTGGAACGAATCATGACCATGACGAACCATGTCATCTTGTGTTAGAGAAT
GAAAACGTTCCCGAGAAGGTCAATCTGCCCGAGTATGGAGGACCAGAAGG
TCGATACTGTCCAGCTCGAGTTTATGAGTACGTTGAAGATGGTGAGGATC
AAAAACTGCAAATCAATGCACAAAACTGTCTTCACTGCAAGGCTTGCGAT
ATTAAGGATCCGACGCAAAACATTACATGGACTGTGCCACAGGGGGGAGG
AGGACCAAAATACACCATGACGTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:263560..265284-

>Ggra4134.t1 ID=Ggra4134.t1|Name=Ggra4134.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1725bp|location=Sequence derived from alignment at tig00000853_pilon:263560..265284- (Gracilaria gracilis GNS1m male)
ATGTTGAAGTTTCTTCTCCCGCAATTCCGGAAGTCTGGGTCAATATCCCA
ACTGTTGCGATCACGGCTGCAGTCCGCCTCGTATTCATCTGTGGCGTCGG
GCGAAAGGGAAAGACTAGAGTATGACGTCGTCATCGTCGGTGCTGGTCCC
GCCGGGCTTTCCGCCGCTATTCAGTTGCGTCAATTGTGTGATCGTGCAGA
CAAGGATTTATCGGTGTGTGTACTGGAAAAGGGCAGTGAGGTAGGCGCTC
ATATTTTGTCTGGTAATGTATTTGAACCTCGCGCCATGGATGAGCTGCTT
CCAAACTGGCGAGATATGGATGCACCGCTGGGCATCGGTGCTGCTGAGGA
TGAGTTCTTTTACTTAACAAAGTCTTCTGCGTTTCGGCTTCCAACACCCC
CGCAGATGAATAACCACGGAAACTATGTGATCTCGTTATCACAAATGACA
AGATGGCTAGGAGAAAAAGCAGAAGAGTTAGGAGTAGAGATATATCCAGG
TTTCGCTGCAGCTCACCTAATGTTTTCTGATGAAGGTTCTGTGTGCGGGG
TAACTACCAATGATTTCGGTATTGCCAAGGATGGTTCGAGAAAGGAAAAT
TATGAACCAGGAATAGATATTGCTGCAAGGGTTACACTTTTGGCCGAGGG
CTGCCGTGGATCTTTATCGAAACAAGCAATTGAAAGATTCCAATTGGACC
AGCGAGCAATGCCCCAAACATATGCTCTTGGTCTCAAGGAAGTATGGCGC
ATATCCAAAGAGATGCATAGGCCCGGAAGGATTGTACATACGATCGGGTA
TCCCATGGATATTCAAACATATGGGGGGTCATTCTTGTATCATATGGCTG
ATGAGATGCTCGCAGTTGGTTATGTCGTAGCTCTAGATTATCGAAACCCT
TTTCTATCCCCATATCAAGAATTCCAACGCTTTAAGTCGCATTCAACTAT
ACGACCTCTCCTGGAGAGTGGTGAAGTTTTGCAGTACGGAGCGAGAGCTT
TGAACGAAGGGGGAGTGCAGTCAATTCCGAACCTTGAATTTCCTGGAGGA
GCATTGATCGGATGCTCAGCTGGGTTTTTAAACGTGCCGAAGATAAAGGG
AACTCATACTGCTCAAAAAAGTGGAATGATTGCGGCAGATGTAATCTTCA
ATAATTATGCAGAAGATGGAATATCCACCCAGGGATATCATGACGCAATG
AAGAAGTCGTGGGTCTGGAAAGAATTAGAAGCTGTGAGGAACATACGTCC
TGGCTTTAAGTACGGCTTACTTGGGGGGCTTGCGAACGCTGCTCTTGAAA
CATATATTACTAGAGGTCGATCCCCGTGGACTCTTGCCCATTCTAAACCG
GATAATGAAGCAACTGACTCTCTCTCCAAGCATAAACCCATAAACTACCC
TAAACCGGACGGCAAGGTAACTTTTGACATATTAACCGCAGTGTCTCTGA
GTGGAACGAATCATGACCATGACGAACCATGTCATCTTGTGTTAGAGAAT
GAAAACGTTCCCGAGAAGGTCAATCTGCCCGAGTATGGAGGACCAGAAGG
TCGATACTGTCCAGCTCGAGTTTATGAGTACGTTGAAGATGGTGAGGATC
AAAAACTGCAAATCAATGCACAAAACTGTCTTCACTGCAAGGCTTGCGAT
ATTAAGGATCCGACGCAAAACATTACATGGACTGTGCCACAGGGGGGAGG
AGGACCAAAATACACCATGACGTAA
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