Ggra4133.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4133.t1
Unique NameGgra4133.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:261687..263185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog489825.LYNGBM3L_21330
Preferred nametilS
PFAMsATP_bind_3,TilS
Max annot lvl1117|Cyanobacteria
KEGG rclassRC02633,RC02634
KEGG koko:K04075
KEGG ReactionR09597
Evalue3.99e-73
EggNOG OGsCOG0037@1|root,COG0037@2|Bacteria,1G11T@1117|Cyanobacteria,1H8FV@1150|Oscillatoriales
EC6.3.4.19
DescriptionLigates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
COG categoryD
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4133Ggra4133Gracilaria gracilis GNS1m malegenetig00000853_pilon 261687..263185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4133.t1Ggra4133.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 261687..263185 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4133.t1.start1Ggra4133.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 261687..261689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4133.t1.CDS1Ggra4133.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 261687..261789 +
Ggra4133.t1.CDS2Ggra4133.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 261866..261962 +
Ggra4133.t1.CDS3Ggra4133.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 262066..263185 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4133.t1.exon1Ggra4133.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 261687..261789 +
Ggra4133.t1.exon2Ggra4133.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 261866..261962 +
Ggra4133.t1.exon3Ggra4133.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 262066..263185 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4133.t1.intron1Ggra4133.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 261790..261865 +
Ggra4133.t1.intron2Ggra4133.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 261963..262065 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4133.t1.stop1Ggra4133.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 263183..263185 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4133.t1 ID=Ggra4133.t1|Name=Ggra4133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
LSLIRADPTDCVCFVLNCPVEVLGQPLKESCIYKEHFDLGVVVVVVYLPL
SLFFTSLFHIHGIHQKSILRQAVCFPTVRDTCNGIPLQNATGKMLFASIT
NRLRLTLARKKLLPRNKRVLIGVSGGQDSLSLVEVLRYLHSRDPWEALEL
AHCDHKWPADVGNPEHVACYARTTGLPLHILSAEGSIPLSENAAREWRYE
SLSSLAEKDGFTHVVTAHTATDLAETILFNLSNGSGADGLSSLSWNRQLT
PSLMLVRPFLHVTREETARLCMERGVAVWSDVYNNDLRYARNRIRSCVFP
AIRKTFHARAEQKFAQSAHLLRDDADCLRQMAKSVMRRTVHISKVQKSDV
QIHINRSLLGSEHKAIQRRVIRMTLEEHVGLGQKGATYVQVEDICDLLKA
PIGKSSASLTGNAQANVANEEQIIIEVPCARSCLAHDVV*
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spliced messenger RNA

>Ggra4133.t1 ID=Ggra4133.t1|Name=Ggra4133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000853_pilon:261687..263185+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCCCTGATCCGGGCAGATCCCACTGATTGCGTTTGTTTTGTTCTCAA
TTGCCCTGTCGAAGTGCTGGGTCAACCGTTGAAGGAGAGCTGTATCTACA
AGGAGCACTTTGACCTTGGGGTTGTCGTGGTTGTCGTATATCTCCCGTTA
TCTCTTTTTTTCACAAGTCTGTTCCATATCCACGGAATCCACCAAAAAAG
CATATTACGCCAAGCTGTTTGTTTCCCGACAGTCCGAGATACTTGCAACG
GAATCCCGCTTCAGAATGCAACAGGGAAAATGCTGTTCGCTTCGATTACG
AACCGCTTGCGCCTTACGCTGGCCCGAAAGAAACTCCTTCCGCGAAACAA
GCGGGTACTGATTGGCGTATCTGGTGGACAAGATTCGCTTTCATTAGTCG
AAGTATTAAGGTATCTACACTCAAGAGACCCGTGGGAGGCCCTAGAACTT
GCACATTGCGACCATAAATGGCCTGCAGATGTTGGGAATCCGGAGCATGT
CGCTTGCTATGCTAGAACTACTGGTTTACCTCTTCATATACTTAGCGCAG
AAGGGTCTATCCCTCTCTCCGAGAATGCCGCCCGAGAATGGCGATACGAG
TCGCTTTCGTCTCTAGCCGAGAAAGACGGGTTTACTCATGTTGTAACGGC
GCATACTGCCACAGATCTAGCTGAAACCATTCTCTTTAATTTGTCAAATG
GCTCAGGTGCAGATGGACTCTCCAGCCTATCATGGAATCGACAGCTTACA
CCGTCGTTAATGCTTGTACGACCGTTTCTCCATGTTACTCGGGAGGAGAC
TGCTCGCCTGTGTATGGAACGTGGAGTCGCCGTTTGGAGCGACGTGTATA
ACAATGATCTTCGATATGCTCGGAACCGCATTCGGTCATGTGTTTTTCCG
GCCATACGTAAGACTTTCCACGCACGGGCTGAACAGAAGTTCGCACAGTC
AGCACATTTATTGCGAGATGATGCAGACTGTCTACGCCAAATGGCCAAAT
CTGTTATGCGGCGCACAGTCCACATATCCAAAGTTCAGAAATCAGACGTT
CAAATTCACATCAATCGAAGTCTTCTCGGGAGTGAGCACAAAGCGATTCA
AAGAAGAGTGATCCGAATGACACTAGAAGAACATGTTGGACTTGGTCAAA
AAGGGGCGACTTATGTACAAGTTGAAGACATTTGTGATCTTCTCAAAGCT
CCTATCGGCAAATCATCTGCGTCTTTGACGGGGAATGCGCAGGCAAATGT
AGCTAATGAGGAACAGATCATCATCGAAGTTCCTTGTGCTCGGTCCTGTC
TTGCACACGATGTAGTCTAG
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protein sequence of Ggra4133.t1

>Ggra4133.t1 ID=Ggra4133.t1|Name=Ggra4133.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
LSLIRADPTDCVCFVLNCPVEVLGQPLKESCIYKEHFDLGVVVVVVYLPL
SLFFTSLFHIHGIHQKSILRQAVCFPTVRDTCNGIPLQNATGKMLFASIT
NRLRLTLARKKLLPRNKRVLIGVSGGQDSLSLVEVLRYLHSRDPWEALEL
AHCDHKWPADVGNPEHVACYARTTGLPLHILSAEGSIPLSENAAREWRYE
SLSSLAEKDGFTHVVTAHTATDLAETILFNLSNGSGADGLSSLSWNRQLT
PSLMLVRPFLHVTREETARLCMERGVAVWSDVYNNDLRYARNRIRSCVFP
AIRKTFHARAEQKFAQSAHLLRDDADCLRQMAKSVMRRTVHISKVQKSDV
QIHINRSLLGSEHKAIQRRVIRMTLEEHVGLGQKGATYVQVEDICDLLKA
PIGKSSASLTGNAQANVANEEQIIIEVPCARSCLAHDVV*
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mRNA from alignment at tig00000853_pilon:261687..263185+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4133.t1 ID=Ggra4133.t1|Name=Ggra4133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1499bp|location=Sequence derived from alignment at tig00000853_pilon:261687..263185+ (Gracilaria gracilis GNS1m male)
TTGTCCCTGATCCGGGCAGATCCCACTGATTGCGTTTGTTTTGTTCTCAA
TTGCCCTGTCGAAGTGCTGGGTCAACCGTTGAAGGAGAGCTGTATCTACA
AGGGTACTTGTTATGCAATGCCATATGTGCTTATCATGATCATTACGGAA
ATGTTCATGAGCAATTGTCGCTCTTGCAGAGCACTTTGACCTTGGGGTTG
TCGTGGTTGTCGTATATCTCCCGTTATCTCTTTTTTTCACAAGTCTGTTC
CATATCCACGGAATCCACCAAAAAAGGTATAGAAGTGCAACTTATATGTG
GTCGTTTTCTATCGGCTCTGCTTTACAACGAGAGTAGATATATGTTGCTC
ACACGTACTTGATGTCCATTCTCGATTAGCATATTACGCCAAGCTGTTTG
TTTCCCGACAGTCCGAGATACTTGCAACGGAATCCCGCTTCAGAATGCAA
CAGGGAAAATGCTGTTCGCTTCGATTACGAACCGCTTGCGCCTTACGCTG
GCCCGAAAGAAACTCCTTCCGCGAAACAAGCGGGTACTGATTGGCGTATC
TGGTGGACAAGATTCGCTTTCATTAGTCGAAGTATTAAGGTATCTACACT
CAAGAGACCCGTGGGAGGCCCTAGAACTTGCACATTGCGACCATAAATGG
CCTGCAGATGTTGGGAATCCGGAGCATGTCGCTTGCTATGCTAGAACTAC
TGGTTTACCTCTTCATATACTTAGCGCAGAAGGGTCTATCCCTCTCTCCG
AGAATGCCGCCCGAGAATGGCGATACGAGTCGCTTTCGTCTCTAGCCGAG
AAAGACGGGTTTACTCATGTTGTAACGGCGCATACTGCCACAGATCTAGC
TGAAACCATTCTCTTTAATTTGTCAAATGGCTCAGGTGCAGATGGACTCT
CCAGCCTATCATGGAATCGACAGCTTACACCGTCGTTAATGCTTGTACGA
CCGTTTCTCCATGTTACTCGGGAGGAGACTGCTCGCCTGTGTATGGAACG
TGGAGTCGCCGTTTGGAGCGACGTGTATAACAATGATCTTCGATATGCTC
GGAACCGCATTCGGTCATGTGTTTTTCCGGCCATACGTAAGACTTTCCAC
GCACGGGCTGAACAGAAGTTCGCACAGTCAGCACATTTATTGCGAGATGA
TGCAGACTGTCTACGCCAAATGGCCAAATCTGTTATGCGGCGCACAGTCC
ACATATCCAAAGTTCAGAAATCAGACGTTCAAATTCACATCAATCGAAGT
CTTCTCGGGAGTGAGCACAAAGCGATTCAAAGAAGAGTGATCCGAATGAC
ACTAGAAGAACATGTTGGACTTGGTCAAAAAGGGGCGACTTATGTACAAG
TTGAAGACATTTGTGATCTTCTCAAAGCTCCTATCGGCAAATCATCTGCG
TCTTTGACGGGGAATGCGCAGGCAAATGTAGCTAATGAGGAACAGATCAT
CATCGAAGTTCCTTGTGCTCGGTCCTGTCTTGCACACGATGTAGTCTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:261687..263185+

>Ggra4133.t1 ID=Ggra4133.t1|Name=Ggra4133.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000853_pilon:261687..263185+ (Gracilaria gracilis GNS1m male)
TTGTCCCTGATCCGGGCAGATCCCACTGATTGCGTTTGTTTTGTTCTCAA
TTGCCCTGTCGAAGTGCTGGGTCAACCGTTGAAGGAGAGCTGTATCTACA
AGGAGCACTTTGACCTTGGGGTTGTCGTGGTTGTCGTATATCTCCCGTTA
TCTCTTTTTTTCACAAGTCTGTTCCATATCCACGGAATCCACCAAAAAAG
CATATTACGCCAAGCTGTTTGTTTCCCGACAGTCCGAGATACTTGCAACG
GAATCCCGCTTCAGAATGCAACAGGGAAAATGCTGTTCGCTTCGATTACG
AACCGCTTGCGCCTTACGCTGGCCCGAAAGAAACTCCTTCCGCGAAACAA
GCGGGTACTGATTGGCGTATCTGGTGGACAAGATTCGCTTTCATTAGTCG
AAGTATTAAGGTATCTACACTCAAGAGACCCGTGGGAGGCCCTAGAACTT
GCACATTGCGACCATAAATGGCCTGCAGATGTTGGGAATCCGGAGCATGT
CGCTTGCTATGCTAGAACTACTGGTTTACCTCTTCATATACTTAGCGCAG
AAGGGTCTATCCCTCTCTCCGAGAATGCCGCCCGAGAATGGCGATACGAG
TCGCTTTCGTCTCTAGCCGAGAAAGACGGGTTTACTCATGTTGTAACGGC
GCATACTGCCACAGATCTAGCTGAAACCATTCTCTTTAATTTGTCAAATG
GCTCAGGTGCAGATGGACTCTCCAGCCTATCATGGAATCGACAGCTTACA
CCGTCGTTAATGCTTGTACGACCGTTTCTCCATGTTACTCGGGAGGAGAC
TGCTCGCCTGTGTATGGAACGTGGAGTCGCCGTTTGGAGCGACGTGTATA
ACAATGATCTTCGATATGCTCGGAACCGCATTCGGTCATGTGTTTTTCCG
GCCATACGTAAGACTTTCCACGCACGGGCTGAACAGAAGTTCGCACAGTC
AGCACATTTATTGCGAGATGATGCAGACTGTCTACGCCAAATGGCCAAAT
CTGTTATGCGGCGCACAGTCCACATATCCAAAGTTCAGAAATCAGACGTT
CAAATTCACATCAATCGAAGTCTTCTCGGGAGTGAGCACAAAGCGATTCA
AAGAAGAGTGATCCGAATGACACTAGAAGAACATGTTGGACTTGGTCAAA
AAGGGGCGACTTATGTACAAGTTGAAGACATTTGTGATCTTCTCAAAGCT
CCTATCGGCAAATCATCTGCGTCTTTGACGGGGAATGCGCAGGCAAATGT
AGCTAATGAGGAACAGATCATCATCGAAGTTCCTTGTGCTCGGTCCTGTC
TTGCACACGATGTAGTCTAG
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