Ggra4131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4131.t1
Unique NameGgra4131.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:259368..260677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7370.XP_005185136.1
Preferred nameUBA5
PFAMsThiF
Max annot lvl33208|Metazoa
KEGG koko:K12164
GOsGO:0000003,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008641,GO:0009966,GO:0009987,GO:0010035,GO:0010038,GO:0010259,GO:0010646,GO:0016874,GO:0016877,GO:0019008,GO:0019538,GO:0019899,GO:0023051,GO:0031624,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033143,GO:0033146,GO:0033554,GO:0034976,GO:0036211,GO:0040011,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051716,GO:0065007,GO:0070647,GO:0071566,GO:0071569,GO:0071704,GO:0097501,GO:1901564,GO:1990564,GO:1990592
Evalue2.73e-153
EggNOG OGsCOG0476@1|root,KOG2336@2759|Eukaryota,38GD7@33154|Opisthokonta,3BFW8@33208|Metazoa,3D0R7@33213|Bilateria,41TEQ@6656|Arthropoda,3SKG5@50557|Insecta,44YZJ@7147|Diptera
DescriptionE1-like enzyme which activates UFM1
COG categoryH
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4131Ggra4131Gracilaria gracilis GNS1m malegenetig00000853_pilon 259368..260677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4131.t1Ggra4131.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 259368..260677 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4131.t1.start1Ggra4131.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 259368..259370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4131.t1.CDS1Ggra4131.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 259368..259430 +
Ggra4131.t1.CDS2Ggra4131.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 259505..260677 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4131.t1.exon1Ggra4131.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 259368..259430 +
Ggra4131.t1.exon2Ggra4131.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 259505..260677 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4131.t1.intron1Ggra4131.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 259431..259504 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4131.t1.stop1Ggra4131.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 260675..260677 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4131.t1 ID=Ggra4131.t1|Name=Ggra4131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MEFFVEKVRQVADDANLPNASKQRISSFLDSLTPQSTRQRIETMSSNVVS
DNPYSRLMALKRMGIVSNYETIREKSVVVVGVGGVGSVAAEMLTRCGIGK
LILFDYDKVELANMNRLFFRPEQSGLSKVDAARDTLLAINPDVEFESYNY
DITSLDNFDHFLTCISSGGRGGSPVDLVLSCVDNFAARNSINAACNELAQ
SWMESGVSEDAVSGHIQLIQPGRLACFSCAPPLVVASDIDERTLKREGVC
AASLPTTMGMVAGMLVQNSLKYLLGFGEVSNYLGYSAMKDFFPTMTLKPN
PACSDSWCVRRQQEVEERRKKEEMEETPNEPDDIEEQELHPDNEWGISLV
EDDGNKEQQTQSKNHDEGTKLTEGLRFQYDTNTGNENISEDDRVKDSGAG
LNDLMAQLKGL*
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spliced messenger RNA

>Ggra4131.t1 ID=Ggra4131.t1|Name=Ggra4131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000853_pilon:259368..260677+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTCTTTGTCGAGAAAGTTCGTCAGGTGGCAGATGACGCGAATCT
GCCTAATGCATCTAAGCAACGAATCTCTAGCTTTCTCGATTCTCTCACAC
CTCAATCCACTCGCCAACGCATAGAAACCATGTCCTCCAATGTGGTCTCA
GATAATCCATACTCCCGACTTATGGCCCTCAAGCGCATGGGAATTGTGTC
GAATTACGAGACCATCCGCGAGAAGTCCGTGGTCGTTGTTGGTGTAGGCG
GCGTTGGATCAGTCGCTGCAGAAATGCTTACGAGATGCGGAATTGGAAAA
CTTATTCTTTTCGATTATGACAAGGTCGAACTCGCCAACATGAATAGGCT
CTTTTTCAGACCAGAACAATCCGGACTGAGCAAAGTAGACGCGGCGCGTG
ACACCCTACTTGCAATCAATCCGGATGTTGAATTTGAGTCCTATAATTAC
GATATCACGTCTCTCGATAACTTTGATCACTTCCTGACATGCATTTCGTC
TGGTGGGAGGGGTGGAAGTCCTGTTGACCTGGTTCTTTCGTGTGTTGATA
ATTTTGCAGCTCGCAATTCTATCAATGCAGCCTGCAACGAACTCGCACAG
TCGTGGATGGAAAGCGGTGTCAGCGAGGATGCGGTTTCTGGCCACATTCA
ACTTATTCAACCAGGGAGATTAGCTTGCTTTAGCTGTGCACCGCCCCTGG
TCGTTGCGTCAGATATCGATGAGCGAACTTTAAAGCGAGAGGGCGTTTGC
GCTGCGTCTTTACCAACCACCATGGGCATGGTTGCAGGTATGCTGGTTCA
AAATTCCCTCAAATACCTCTTGGGCTTTGGGGAAGTTTCAAACTATCTGG
GCTACTCAGCCATGAAAGACTTTTTTCCGACCATGACATTAAAGCCGAAC
CCGGCTTGCAGCGATTCATGGTGTGTACGGAGACAGCAAGAAGTAGAGGA
GCGTAGAAAGAAGGAAGAAATGGAAGAAACACCTAATGAACCGGATGACA
TTGAAGAACAAGAGTTACATCCAGATAATGAATGGGGCATATCTTTGGTA
GAAGATGACGGCAACAAGGAGCAACAAACACAATCGAAAAATCACGACGA
AGGGACTAAACTAACGGAAGGATTGCGTTTTCAATACGATACAAACACTG
GCAATGAAAATATATCGGAAGACGATAGGGTTAAAGATAGTGGCGCTGGG
CTGAACGACTTGATGGCGCAGTTGAAAGGGCTCTGA
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protein sequence of Ggra4131.t1

>Ggra4131.t1 ID=Ggra4131.t1|Name=Ggra4131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MEFFVEKVRQVADDANLPNASKQRISSFLDSLTPQSTRQRIETMSSNVVS
DNPYSRLMALKRMGIVSNYETIREKSVVVVGVGGVGSVAAEMLTRCGIGK
LILFDYDKVELANMNRLFFRPEQSGLSKVDAARDTLLAINPDVEFESYNY
DITSLDNFDHFLTCISSGGRGGSPVDLVLSCVDNFAARNSINAACNELAQ
SWMESGVSEDAVSGHIQLIQPGRLACFSCAPPLVVASDIDERTLKREGVC
AASLPTTMGMVAGMLVQNSLKYLLGFGEVSNYLGYSAMKDFFPTMTLKPN
PACSDSWCVRRQQEVEERRKKEEMEETPNEPDDIEEQELHPDNEWGISLV
EDDGNKEQQTQSKNHDEGTKLTEGLRFQYDTNTGNENISEDDRVKDSGAG
LNDLMAQLKGL*
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mRNA from alignment at tig00000853_pilon:259368..260677+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4131.t1 ID=Ggra4131.t1|Name=Ggra4131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1310bp|location=Sequence derived from alignment at tig00000853_pilon:259368..260677+ (Gracilaria gracilis GNS1m male)
ATGGAATTCTTTGTCGAGAAAGTTCGTCAGGTGGCAGATGACGCGAATCT
GCCTAATGCATCTGTACGTCGTTCAAACGTTCACACTTTTCATTTTGAGA
GAAAGGTGCTGTTCTCTGACATTCACTGCTGTGATAGAAGCAACGAATCT
CTAGCTTTCTCGATTCTCTCACACCTCAATCCACTCGCCAACGCATAGAA
ACCATGTCCTCCAATGTGGTCTCAGATAATCCATACTCCCGACTTATGGC
CCTCAAGCGCATGGGAATTGTGTCGAATTACGAGACCATCCGCGAGAAGT
CCGTGGTCGTTGTTGGTGTAGGCGGCGTTGGATCAGTCGCTGCAGAAATG
CTTACGAGATGCGGAATTGGAAAACTTATTCTTTTCGATTATGACAAGGT
CGAACTCGCCAACATGAATAGGCTCTTTTTCAGACCAGAACAATCCGGAC
TGAGCAAAGTAGACGCGGCGCGTGACACCCTACTTGCAATCAATCCGGAT
GTTGAATTTGAGTCCTATAATTACGATATCACGTCTCTCGATAACTTTGA
TCACTTCCTGACATGCATTTCGTCTGGTGGGAGGGGTGGAAGTCCTGTTG
ACCTGGTTCTTTCGTGTGTTGATAATTTTGCAGCTCGCAATTCTATCAAT
GCAGCCTGCAACGAACTCGCACAGTCGTGGATGGAAAGCGGTGTCAGCGA
GGATGCGGTTTCTGGCCACATTCAACTTATTCAACCAGGGAGATTAGCTT
GCTTTAGCTGTGCACCGCCCCTGGTCGTTGCGTCAGATATCGATGAGCGA
ACTTTAAAGCGAGAGGGCGTTTGCGCTGCGTCTTTACCAACCACCATGGG
CATGGTTGCAGGTATGCTGGTTCAAAATTCCCTCAAATACCTCTTGGGCT
TTGGGGAAGTTTCAAACTATCTGGGCTACTCAGCCATGAAAGACTTTTTT
CCGACCATGACATTAAAGCCGAACCCGGCTTGCAGCGATTCATGGTGTGT
ACGGAGACAGCAAGAAGTAGAGGAGCGTAGAAAGAAGGAAGAAATGGAAG
AAACACCTAATGAACCGGATGACATTGAAGAACAAGAGTTACATCCAGAT
AATGAATGGGGCATATCTTTGGTAGAAGATGACGGCAACAAGGAGCAACA
AACACAATCGAAAAATCACGACGAAGGGACTAAACTAACGGAAGGATTGC
GTTTTCAATACGATACAAACACTGGCAATGAAAATATATCGGAAGACGAT
AGGGTTAAAGATAGTGGCGCTGGGCTGAACGACTTGATGGCGCAGTTGAA
AGGGCTCTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:259368..260677+

>Ggra4131.t1 ID=Ggra4131.t1|Name=Ggra4131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000853_pilon:259368..260677+ (Gracilaria gracilis GNS1m male)
ATGGAATTCTTTGTCGAGAAAGTTCGTCAGGTGGCAGATGACGCGAATCT
GCCTAATGCATCTAAGCAACGAATCTCTAGCTTTCTCGATTCTCTCACAC
CTCAATCCACTCGCCAACGCATAGAAACCATGTCCTCCAATGTGGTCTCA
GATAATCCATACTCCCGACTTATGGCCCTCAAGCGCATGGGAATTGTGTC
GAATTACGAGACCATCCGCGAGAAGTCCGTGGTCGTTGTTGGTGTAGGCG
GCGTTGGATCAGTCGCTGCAGAAATGCTTACGAGATGCGGAATTGGAAAA
CTTATTCTTTTCGATTATGACAAGGTCGAACTCGCCAACATGAATAGGCT
CTTTTTCAGACCAGAACAATCCGGACTGAGCAAAGTAGACGCGGCGCGTG
ACACCCTACTTGCAATCAATCCGGATGTTGAATTTGAGTCCTATAATTAC
GATATCACGTCTCTCGATAACTTTGATCACTTCCTGACATGCATTTCGTC
TGGTGGGAGGGGTGGAAGTCCTGTTGACCTGGTTCTTTCGTGTGTTGATA
ATTTTGCAGCTCGCAATTCTATCAATGCAGCCTGCAACGAACTCGCACAG
TCGTGGATGGAAAGCGGTGTCAGCGAGGATGCGGTTTCTGGCCACATTCA
ACTTATTCAACCAGGGAGATTAGCTTGCTTTAGCTGTGCACCGCCCCTGG
TCGTTGCGTCAGATATCGATGAGCGAACTTTAAAGCGAGAGGGCGTTTGC
GCTGCGTCTTTACCAACCACCATGGGCATGGTTGCAGGTATGCTGGTTCA
AAATTCCCTCAAATACCTCTTGGGCTTTGGGGAAGTTTCAAACTATCTGG
GCTACTCAGCCATGAAAGACTTTTTTCCGACCATGACATTAAAGCCGAAC
CCGGCTTGCAGCGATTCATGGTGTGTACGGAGACAGCAAGAAGTAGAGGA
GCGTAGAAAGAAGGAAGAAATGGAAGAAACACCTAATGAACCGGATGACA
TTGAAGAACAAGAGTTACATCCAGATAATGAATGGGGCATATCTTTGGTA
GAAGATGACGGCAACAAGGAGCAACAAACACAATCGAAAAATCACGACGA
AGGGACTAAACTAACGGAAGGATTGCGTTTTCAATACGATACAAACACTG
GCAATGAAAATATATCGGAAGACGATAGGGTTAAAGATAGTGGCGCTGGG
CTGAACGACTTGATGGCGCAGTTGAAAGGGCTCTGA
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