Ggra4125.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4125.t1
Unique NameGgra4125.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:206661..207347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726219
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl33208|Metazoa
Evalue3.41e-19
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,3A06N@33154|Opisthokonta,3BUH6@33208|Metazoa
DescriptionubiE/COQ5 methyltransferase family
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4125Ggra4125Gracilaria gracilis GNS1m malegenetig00000853_pilon 206661..207347 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4125.t1.stop1Ggra4125.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 206661..206663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4125.t1.CDS1Ggra4125.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 206661..207347 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4125.t1.exon1Ggra4125.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 206661..207347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4125.t1.start1Ggra4125.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 207345..207347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4125.t1Ggra4125.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 206661..207347 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4125.t1 ID=Ggra4125.t1|Name=Ggra4125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=229bp
MADISKVNRSVSEKHKIAISDVPQEQKKAAYDSWGPSYDEDMWIEPIYSW
EIGAEMMLEIINANSKAGSVPIVVDAGCGTGGPGGILRKLANEQDRQIRL
IGYDFSQSMLEQAQSKGVYDELFIGDLLSEVPLKEQTVDYVMSFGVFVDG
SDHPEALAKVLSHIRKGGMAVITFRLNTFERMKTAYKKVMEKVGCTIVKE
KIDKYYGTDNALYVIFKKSGGPEGPEQL*
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spliced messenger RNA

>Ggra4125.t1 ID=Ggra4125.t1|Name=Ggra4125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000853_pilon:206661..207347- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATATCTCCAAAGTCAACCGCAGTGTGAGCGAAAAGCATAAAAT
TGCGATCTCCGACGTCCCACAAGAACAGAAGAAAGCAGCGTATGATTCTT
GGGGCCCTAGTTACGATGAAGACATGTGGATAGAGCCCATTTACTCTTGG
GAAATTGGTGCAGAAATGATGCTTGAGATCATCAATGCAAATAGCAAAGC
GGGAAGTGTGCCCATTGTAGTGGATGCGGGGTGTGGTACCGGCGGACCAG
GCGGCATTCTTCGGAAGCTCGCGAACGAGCAGGACAGGCAAATTCGTTTG
ATTGGATATGATTTCAGCCAAAGCATGCTTGAACAAGCCCAAAGCAAGGG
GGTTTATGATGAGCTGTTTATAGGTGATCTGTTGAGTGAAGTTCCCCTAA
AGGAGCAAACTGTCGATTATGTCATGAGCTTCGGAGTGTTCGTGGACGGC
TCTGATCATCCTGAGGCTTTGGCGAAGGTATTGAGCCACATCCGAAAAGG
GGGCATGGCAGTCATTACGTTTCGTTTGAATACGTTCGAGAGAATGAAAA
CGGCTTACAAAAAGGTTATGGAGAAAGTTGGATGCACCATTGTCAAAGAG
AAAATTGACAAATACTACGGGACTGATAATGCTTTGTACGTCATTTTCAA
GAAGTCAGGGGGTCCAGAGGGCCCGGAACAACTCTGA
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protein sequence of Ggra4125.t1

>Ggra4125.t1 ID=Ggra4125.t1|Name=Ggra4125.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=229bp
MADISKVNRSVSEKHKIAISDVPQEQKKAAYDSWGPSYDEDMWIEPIYSW
EIGAEMMLEIINANSKAGSVPIVVDAGCGTGGPGGILRKLANEQDRQIRL
IGYDFSQSMLEQAQSKGVYDELFIGDLLSEVPLKEQTVDYVMSFGVFVDG
SDHPEALAKVLSHIRKGGMAVITFRLNTFERMKTAYKKVMEKVGCTIVKE
KIDKYYGTDNALYVIFKKSGGPEGPEQL*
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mRNA from alignment at tig00000853_pilon:206661..207347-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4125.t1 ID=Ggra4125.t1|Name=Ggra4125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000853_pilon:206661..207347- (Gracilaria gracilis GNS1m male)
ATGGCAGATATCTCCAAAGTCAACCGCAGTGTGAGCGAAAAGCATAAAAT
TGCGATCTCCGACGTCCCACAAGAACAGAAGAAAGCAGCGTATGATTCTT
GGGGCCCTAGTTACGATGAAGACATGTGGATAGAGCCCATTTACTCTTGG
GAAATTGGTGCAGAAATGATGCTTGAGATCATCAATGCAAATAGCAAAGC
GGGAAGTGTGCCCATTGTAGTGGATGCGGGGTGTGGTACCGGCGGACCAG
GCGGCATTCTTCGGAAGCTCGCGAACGAGCAGGACAGGCAAATTCGTTTG
ATTGGATATGATTTCAGCCAAAGCATGCTTGAACAAGCCCAAAGCAAGGG
GGTTTATGATGAGCTGTTTATAGGTGATCTGTTGAGTGAAGTTCCCCTAA
AGGAGCAAACTGTCGATTATGTCATGAGCTTCGGAGTGTTCGTGGACGGC
TCTGATCATCCTGAGGCTTTGGCGAAGGTATTGAGCCACATCCGAAAAGG
GGGCATGGCAGTCATTACGTTTCGTTTGAATACGTTCGAGAGAATGAAAA
CGGCTTACAAAAAGGTTATGGAGAAAGTTGGATGCACCATTGTCAAAGAG
AAAATTGACAAATACTACGGGACTGATAATGCTTTGTACGTCATTTTCAA
GAAGTCAGGGGGTCCAGAGGGCCCGGAACAACTCTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:206661..207347-

>Ggra4125.t1 ID=Ggra4125.t1|Name=Ggra4125.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000853_pilon:206661..207347- (Gracilaria gracilis GNS1m male)
ATGGCAGATATCTCCAAAGTCAACCGCAGTGTGAGCGAAAAGCATAAAAT
TGCGATCTCCGACGTCCCACAAGAACAGAAGAAAGCAGCGTATGATTCTT
GGGGCCCTAGTTACGATGAAGACATGTGGATAGAGCCCATTTACTCTTGG
GAAATTGGTGCAGAAATGATGCTTGAGATCATCAATGCAAATAGCAAAGC
GGGAAGTGTGCCCATTGTAGTGGATGCGGGGTGTGGTACCGGCGGACCAG
GCGGCATTCTTCGGAAGCTCGCGAACGAGCAGGACAGGCAAATTCGTTTG
ATTGGATATGATTTCAGCCAAAGCATGCTTGAACAAGCCCAAAGCAAGGG
GGTTTATGATGAGCTGTTTATAGGTGATCTGTTGAGTGAAGTTCCCCTAA
AGGAGCAAACTGTCGATTATGTCATGAGCTTCGGAGTGTTCGTGGACGGC
TCTGATCATCCTGAGGCTTTGGCGAAGGTATTGAGCCACATCCGAAAAGG
GGGCATGGCAGTCATTACGTTTCGTTTGAATACGTTCGAGAGAATGAAAA
CGGCTTACAAAAAGGTTATGGAGAAAGTTGGATGCACCATTGTCAAAGAG
AAAATTGACAAATACTACGGGACTGATAATGCTTTGTACGTCATTTTCAA
GAAGTCAGGGGGTCCAGAGGGCCCGGAACAACTCTGA
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