Ggra4124.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4124.t1
Unique NameGgra4124.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length603
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:184794..186602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705165.1
Preferred nameVPS45
PFAMsSec1
Max annot lvl2759|Eukaryota
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03495,ko:K12479,ko:K20367
KEGG ReactionR08701
KEGG Pathwayko04138,ko04144,map04138,map04144
GOsGO:0000011,GO:0000139,GO:0000149,GO:0000325,GO:0001505,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006836,GO:0006873,GO:0006885,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006898,GO:0006906,GO:0006907,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007596,GO:0007599,GO:0008021,GO:0008104,GO:0008150,GO:0009611,GO:0009705,GO:0009987,GO:0010008,GO:0010638,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0016482,GO:0017156,GO:0019725,GO:0019898,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030004,GO:0030133,GO:0030641,GO:0031090,GO:0031201,GO:0031224,GO:0031334,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0031984,GO:0032258,GO:0032501,GO:0032588,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034058,GO:0034613,GO:0034622,GO:0035542,GO:0035543,GO:0042060,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045851,GO:0046903,GO:0046907,GO:0048193,GO:0048210,GO:0048227,GO:0048284,GO:0048308,GO:0048489,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050817,GO:0050878,GO:0050896,GO:0051049,GO:0051050,GO:0051082,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055067,GO:0055080,GO:0055082,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098771,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029
Evalue2.17e-170
EggNOG OGsCOG5158@1|root,KOG1299@2759|Eukaryota
Descriptionvesicle docking involved in exocytosis
COG categoryU
BRITEko00000,ko00001,ko03016,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4124Ggra4124Gracilaria gracilis GNS1m malegenetig00000853_pilon 184794..186602 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4124.t1.stop1Ggra4124.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 184794..184796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4124.t1.CDS1Ggra4124.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 184794..186602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4124.t1.exon1Ggra4124.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 184794..186602 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4124.t1.start1Ggra4124.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 186600..186602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4124.t1Ggra4124.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 184794..186602 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4124.t1 ID=Ggra4124.t1|Name=Ggra4124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp
MEPRQSLLHYMNQVVGDSDELKALLLDDETAKIVSLLISQSSLLKHEVLL
IEKLNAERSQDLSHMQAVVLVRPTAENVHALRKELRDPHYRSYKVVFSNV
VRRTLVEEIADADEMELVTEVREMYCDFFALGKYLLSFEVCPCLDANFTR
SGAIQNPMLERTLDGVSAVLLSLKRKPQVRYLASSALCRNIAERLCVKMD
QERSLFEFRTREKAPLLLIIDRREDPVTPLLNQWTYEAMIHELIGINCNR
VSLKDAKNVPEEFRELVLDDIEDEFYRQNRYKNFGDLGMSLKDLVDSFQK
QSKSCNNLKGIEDMMRFVGNYPEFRKSSSNVSKHVAIAGELSRKVSEMNL
LEVSQLEQDLACREAEGDHRKQIMDILNNPRVSQSDKLRLVMLYGLRYEG
RSDKGLALMKDTLHKVGVAPEGVHLITSVKEYAGIAKRSGDVFSNRTFFA
MASNTVRRGIGGVDNVYTQHEPLLIGTLDDLFRNKLKNADFPMARPDEGT
YGKSLIGDANTPATVPPPQELIVLMAGGVTYEESKCVSSINGEHDGYAPP
EGSVTASAATIAHQLQAKVVLVGTTVHNSTSFAVEISRNSESSQNRLGRT
VE*
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spliced messenger RNA

>Ggra4124.t1 ID=Ggra4124.t1|Name=Ggra4124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00000853_pilon:184794..186602- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCTAGGCAATCTCTATTGCACTACATGAACCAGGTAGTCGGGGA
CTCTGACGAATTGAAAGCGTTGCTCTTGGATGATGAAACGGCAAAGATTG
TGAGCCTTCTTATATCTCAGTCAAGTTTGCTCAAGCACGAAGTTCTTCTC
ATTGAGAAGCTCAACGCTGAACGTTCGCAAGACCTATCGCATATGCAAGC
GGTCGTACTTGTTCGCCCAACTGCAGAAAACGTACATGCCTTAAGAAAGG
AACTTCGAGATCCTCATTATCGGTCTTACAAAGTTGTGTTCAGCAATGTC
GTCCGTCGAACGCTCGTAGAAGAAATCGCTGATGCCGACGAAATGGAGCT
TGTTACAGAAGTTCGGGAAATGTACTGCGATTTCTTTGCCCTCGGGAAGT
ATTTGCTTTCGTTCGAAGTATGTCCATGTCTTGACGCCAATTTCACCAGA
AGCGGGGCCATTCAAAACCCTATGCTGGAGAGGACACTAGATGGGGTTAG
CGCTGTCTTGTTATCCCTCAAGCGCAAACCGCAAGTGCGCTATTTGGCTT
CAAGTGCTCTTTGTCGAAACATAGCTGAACGGCTATGTGTTAAGATGGAT
CAGGAACGAAGCTTATTCGAGTTCCGAACTCGAGAAAAGGCGCCATTACT
TTTGATTATTGATCGGAGAGAGGATCCTGTGACACCACTTCTCAACCAGT
GGACATACGAAGCAATGATTCATGAATTAATCGGGATCAATTGTAATAGA
GTCAGCTTAAAGGATGCCAAGAATGTTCCTGAAGAATTCAGAGAGCTGGT
GCTTGACGATATAGAAGACGAATTTTACCGACAGAATCGTTACAAGAACT
TTGGGGATCTTGGTATGAGCCTTAAAGACCTAGTCGATTCATTTCAGAAA
CAAAGCAAAAGCTGTAACAATTTGAAAGGTATAGAGGACATGATGCGTTT
TGTAGGCAACTATCCTGAATTTCGGAAGTCTTCTTCAAACGTAAGCAAAC
ACGTTGCCATAGCCGGTGAGCTGTCCCGAAAAGTGAGCGAAATGAACCTT
CTTGAGGTTTCCCAACTTGAACAAGACCTTGCTTGTAGAGAAGCCGAAGG
TGACCATCGAAAGCAAATCATGGATATATTGAACAATCCTAGAGTAAGTC
AATCAGATAAATTACGGCTGGTTATGCTATATGGTCTACGGTATGAGGGA
AGAAGTGATAAGGGACTCGCTTTGATGAAGGACACTCTTCACAAAGTCGG
GGTTGCGCCAGAAGGTGTGCATCTAATCACATCTGTTAAGGAGTACGCTG
GAATAGCGAAGCGCTCTGGAGATGTGTTTTCCAATCGTACTTTCTTTGCT
ATGGCAAGCAACACTGTGCGTAGAGGAATTGGGGGGGTTGATAATGTCTA
CACACAGCACGAACCATTGCTAATAGGAACTTTGGATGACCTCTTTCGAA
ACAAGTTGAAGAACGCCGACTTTCCAATGGCTCGACCAGATGAAGGCACA
TACGGAAAGAGTTTGATCGGGGATGCGAATACACCTGCGACGGTTCCGCC
CCCTCAGGAACTAATTGTTTTAATGGCTGGAGGAGTCACGTATGAGGAAT
CAAAATGCGTCTCGAGCATAAACGGTGAACATGACGGCTATGCTCCACCT
GAGGGTTCAGTGACAGCGTCTGCAGCAACTATTGCGCATCAATTACAGGC
CAAAGTTGTTCTCGTGGGAACCACTGTTCATAATTCCACATCGTTTGCGG
TGGAAATTAGTCGGAACTCTGAATCTTCCCAGAATCGCCTGGGACGAACT
GTAGAATAG
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protein sequence of Ggra4124.t1

>Ggra4124.t1 ID=Ggra4124.t1|Name=Ggra4124.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=603bp
MEPRQSLLHYMNQVVGDSDELKALLLDDETAKIVSLLISQSSLLKHEVLL
IEKLNAERSQDLSHMQAVVLVRPTAENVHALRKELRDPHYRSYKVVFSNV
VRRTLVEEIADADEMELVTEVREMYCDFFALGKYLLSFEVCPCLDANFTR
SGAIQNPMLERTLDGVSAVLLSLKRKPQVRYLASSALCRNIAERLCVKMD
QERSLFEFRTREKAPLLLIIDRREDPVTPLLNQWTYEAMIHELIGINCNR
VSLKDAKNVPEEFRELVLDDIEDEFYRQNRYKNFGDLGMSLKDLVDSFQK
QSKSCNNLKGIEDMMRFVGNYPEFRKSSSNVSKHVAIAGELSRKVSEMNL
LEVSQLEQDLACREAEGDHRKQIMDILNNPRVSQSDKLRLVMLYGLRYEG
RSDKGLALMKDTLHKVGVAPEGVHLITSVKEYAGIAKRSGDVFSNRTFFA
MASNTVRRGIGGVDNVYTQHEPLLIGTLDDLFRNKLKNADFPMARPDEGT
YGKSLIGDANTPATVPPPQELIVLMAGGVTYEESKCVSSINGEHDGYAPP
EGSVTASAATIAHQLQAKVVLVGTTVHNSTSFAVEISRNSESSQNRLGRT
VE*
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mRNA from alignment at tig00000853_pilon:184794..186602-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4124.t1 ID=Ggra4124.t1|Name=Ggra4124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00000853_pilon:184794..186602- (Gracilaria gracilis GNS1m male)
ATGGAGCCTAGGCAATCTCTATTGCACTACATGAACCAGGTAGTCGGGGA
CTCTGACGAATTGAAAGCGTTGCTCTTGGATGATGAAACGGCAAAGATTG
TGAGCCTTCTTATATCTCAGTCAAGTTTGCTCAAGCACGAAGTTCTTCTC
ATTGAGAAGCTCAACGCTGAACGTTCGCAAGACCTATCGCATATGCAAGC
GGTCGTACTTGTTCGCCCAACTGCAGAAAACGTACATGCCTTAAGAAAGG
AACTTCGAGATCCTCATTATCGGTCTTACAAAGTTGTGTTCAGCAATGTC
GTCCGTCGAACGCTCGTAGAAGAAATCGCTGATGCCGACGAAATGGAGCT
TGTTACAGAAGTTCGGGAAATGTACTGCGATTTCTTTGCCCTCGGGAAGT
ATTTGCTTTCGTTCGAAGTATGTCCATGTCTTGACGCCAATTTCACCAGA
AGCGGGGCCATTCAAAACCCTATGCTGGAGAGGACACTAGATGGGGTTAG
CGCTGTCTTGTTATCCCTCAAGCGCAAACCGCAAGTGCGCTATTTGGCTT
CAAGTGCTCTTTGTCGAAACATAGCTGAACGGCTATGTGTTAAGATGGAT
CAGGAACGAAGCTTATTCGAGTTCCGAACTCGAGAAAAGGCGCCATTACT
TTTGATTATTGATCGGAGAGAGGATCCTGTGACACCACTTCTCAACCAGT
GGACATACGAAGCAATGATTCATGAATTAATCGGGATCAATTGTAATAGA
GTCAGCTTAAAGGATGCCAAGAATGTTCCTGAAGAATTCAGAGAGCTGGT
GCTTGACGATATAGAAGACGAATTTTACCGACAGAATCGTTACAAGAACT
TTGGGGATCTTGGTATGAGCCTTAAAGACCTAGTCGATTCATTTCAGAAA
CAAAGCAAAAGCTGTAACAATTTGAAAGGTATAGAGGACATGATGCGTTT
TGTAGGCAACTATCCTGAATTTCGGAAGTCTTCTTCAAACGTAAGCAAAC
ACGTTGCCATAGCCGGTGAGCTGTCCCGAAAAGTGAGCGAAATGAACCTT
CTTGAGGTTTCCCAACTTGAACAAGACCTTGCTTGTAGAGAAGCCGAAGG
TGACCATCGAAAGCAAATCATGGATATATTGAACAATCCTAGAGTAAGTC
AATCAGATAAATTACGGCTGGTTATGCTATATGGTCTACGGTATGAGGGA
AGAAGTGATAAGGGACTCGCTTTGATGAAGGACACTCTTCACAAAGTCGG
GGTTGCGCCAGAAGGTGTGCATCTAATCACATCTGTTAAGGAGTACGCTG
GAATAGCGAAGCGCTCTGGAGATGTGTTTTCCAATCGTACTTTCTTTGCT
ATGGCAAGCAACACTGTGCGTAGAGGAATTGGGGGGGTTGATAATGTCTA
CACACAGCACGAACCATTGCTAATAGGAACTTTGGATGACCTCTTTCGAA
ACAAGTTGAAGAACGCCGACTTTCCAATGGCTCGACCAGATGAAGGCACA
TACGGAAAGAGTTTGATCGGGGATGCGAATACACCTGCGACGGTTCCGCC
CCCTCAGGAACTAATTGTTTTAATGGCTGGAGGAGTCACGTATGAGGAAT
CAAAATGCGTCTCGAGCATAAACGGTGAACATGACGGCTATGCTCCACCT
GAGGGTTCAGTGACAGCGTCTGCAGCAACTATTGCGCATCAATTACAGGC
CAAAGTTGTTCTCGTGGGAACCACTGTTCATAATTCCACATCGTTTGCGG
TGGAAATTAGTCGGAACTCTGAATCTTCCCAGAATCGCCTGGGACGAACT
GTAGAATAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:184794..186602-

>Ggra4124.t1 ID=Ggra4124.t1|Name=Ggra4124.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1809bp|location=Sequence derived from alignment at tig00000853_pilon:184794..186602- (Gracilaria gracilis GNS1m male)
ATGGAGCCTAGGCAATCTCTATTGCACTACATGAACCAGGTAGTCGGGGA
CTCTGACGAATTGAAAGCGTTGCTCTTGGATGATGAAACGGCAAAGATTG
TGAGCCTTCTTATATCTCAGTCAAGTTTGCTCAAGCACGAAGTTCTTCTC
ATTGAGAAGCTCAACGCTGAACGTTCGCAAGACCTATCGCATATGCAAGC
GGTCGTACTTGTTCGCCCAACTGCAGAAAACGTACATGCCTTAAGAAAGG
AACTTCGAGATCCTCATTATCGGTCTTACAAAGTTGTGTTCAGCAATGTC
GTCCGTCGAACGCTCGTAGAAGAAATCGCTGATGCCGACGAAATGGAGCT
TGTTACAGAAGTTCGGGAAATGTACTGCGATTTCTTTGCCCTCGGGAAGT
ATTTGCTTTCGTTCGAAGTATGTCCATGTCTTGACGCCAATTTCACCAGA
AGCGGGGCCATTCAAAACCCTATGCTGGAGAGGACACTAGATGGGGTTAG
CGCTGTCTTGTTATCCCTCAAGCGCAAACCGCAAGTGCGCTATTTGGCTT
CAAGTGCTCTTTGTCGAAACATAGCTGAACGGCTATGTGTTAAGATGGAT
CAGGAACGAAGCTTATTCGAGTTCCGAACTCGAGAAAAGGCGCCATTACT
TTTGATTATTGATCGGAGAGAGGATCCTGTGACACCACTTCTCAACCAGT
GGACATACGAAGCAATGATTCATGAATTAATCGGGATCAATTGTAATAGA
GTCAGCTTAAAGGATGCCAAGAATGTTCCTGAAGAATTCAGAGAGCTGGT
GCTTGACGATATAGAAGACGAATTTTACCGACAGAATCGTTACAAGAACT
TTGGGGATCTTGGTATGAGCCTTAAAGACCTAGTCGATTCATTTCAGAAA
CAAAGCAAAAGCTGTAACAATTTGAAAGGTATAGAGGACATGATGCGTTT
TGTAGGCAACTATCCTGAATTTCGGAAGTCTTCTTCAAACGTAAGCAAAC
ACGTTGCCATAGCCGGTGAGCTGTCCCGAAAAGTGAGCGAAATGAACCTT
CTTGAGGTTTCCCAACTTGAACAAGACCTTGCTTGTAGAGAAGCCGAAGG
TGACCATCGAAAGCAAATCATGGATATATTGAACAATCCTAGAGTAAGTC
AATCAGATAAATTACGGCTGGTTATGCTATATGGTCTACGGTATGAGGGA
AGAAGTGATAAGGGACTCGCTTTGATGAAGGACACTCTTCACAAAGTCGG
GGTTGCGCCAGAAGGTGTGCATCTAATCACATCTGTTAAGGAGTACGCTG
GAATAGCGAAGCGCTCTGGAGATGTGTTTTCCAATCGTACTTTCTTTGCT
ATGGCAAGCAACACTGTGCGTAGAGGAATTGGGGGGGTTGATAATGTCTA
CACACAGCACGAACCATTGCTAATAGGAACTTTGGATGACCTCTTTCGAA
ACAAGTTGAAGAACGCCGACTTTCCAATGGCTCGACCAGATGAAGGCACA
TACGGAAAGAGTTTGATCGGGGATGCGAATACACCTGCGACGGTTCCGCC
CCCTCAGGAACTAATTGTTTTAATGGCTGGAGGAGTCACGTATGAGGAAT
CAAAATGCGTCTCGAGCATAAACGGTGAACATGACGGCTATGCTCCACCT
GAGGGTTCAGTGACAGCGTCTGCAGCAACTATTGCGCATCAATTACAGGC
CAAAGTTGTTCTCGTGGGAACCACTGTTCATAATTCCACATCGTTTGCGG
TGGAAATTAGTCGGAACTCTGAATCTTCCCAGAATCGCCTGGGACGAACT
GTAGAATAG
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