Ggra4117.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4117.t1
Unique Name	Ggra4117.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:170889..172169 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM013CT
PFAMs	TGT
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00063
KEGG ko	ko:K00773
KEGG Reaction	R03789,R10209
Evalue	3.89e-189
EggNOG OGs	COG0343@1\|root,KOG3908@2759\|Eukaryota
EC	2.4.2.29
Description	tRNA-guanine transglycosylation
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4117	Ggra4117	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 170889..172169 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4117.t1.start1	Ggra4117.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 170889..170891 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4117.t1.CDS1	Ggra4117.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 170889..172169 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4117.t1.exon1	Ggra4117.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 170889..172169 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4117.t1.stop1	Ggra4117.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 172167..172169 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4117.t1	Ggra4117.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 170889..172169 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:170889..172169+
coding sequence from alignment at tig00000853_pilon:170889..172169+

mRNA sequence

>Ggra4117.t1 ID=Ggra4117.t1|Name=Ggra4117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=427bp
MTRVPVPLMRRFCSDLAANPVPRTRIKHPRKAPAIDPYTLPPPPESFPKL
DPLDCFRYELIHQSSRSAARVGRIHTAHGIIDTPGFVAVATNGALKAVDH
RPLEDLLQLIFCNTYHLLLHPGPDVIREAGGLHNFMNRDRPIITDSGGFQ
VFSLAHGSVTDELNMKRSRKREKSLLLEVDENGATFRSYRDGRRITLTPE
SSVDAQKAYGSDIIVPLDELPPYHIDRDVLHRSVLLSHRWEARSLRRHLE
DRRNQAMYAVVHGGVDQELRRMSAEYLMSLPFDGYAIGGSLGKDRPELFD
LLRFVVPLLPKDKPNHLLGIADVDSIQGAVPFGVDTFDSCFPTRLGRHGT
LLTKRFGRIQIRQGKWRNVFEPPDWEGGLQGHTLAYLHHLFKVHEPIAAT
LLTLHNLLFMSEFMESLRCKILNDEI*

spliced messenger RNA

>Ggra4117.t1 ID=Ggra4117.t1|Name=Ggra4117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000853_pilon:170889..172169+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGGGTCCCAGTCCCATTGATGCGGCGATTCTGTTCGGATCTTGC
TGCAAATCCGGTCCCCAGGACCAGGATTAAGCACCCGCGAAAAGCGCCGG
CTATAGACCCCTACACTCTTCCACCCCCTCCGGAATCATTCCCAAAGCTT
GACCCACTGGATTGCTTTAGATACGAGCTTATTCATCAATCATCCCGGTC
TGCTGCTCGAGTGGGACGTATTCACACTGCCCATGGAATCATAGATACTC
CTGGCTTCGTAGCAGTCGCCACAAATGGAGCTTTGAAGGCGGTCGATCAT
CGCCCACTTGAAGATCTCTTGCAGCTTATCTTTTGTAACACATATCATCT
TCTCCTGCATCCTGGCCCAGATGTTATTAGAGAGGCCGGGGGGCTACATA
ACTTTATGAACCGCGACAGACCCATTATTACGGATTCCGGAGGGTTTCAA
GTATTTAGTCTCGCCCACGGCAGCGTTACGGATGAGCTCAACATGAAGAG
ATCTAGAAAGAGGGAAAAGTCTCTTCTTCTTGAGGTTGATGAGAACGGGG
CCACTTTTCGTTCATACAGAGACGGCCGGCGAATCACGCTTACGCCTGAA
TCCAGTGTTGACGCACAGAAAGCGTATGGTTCTGATATTATCGTCCCGCT
TGATGAACTCCCCCCATACCACATCGATAGGGATGTACTACACCGGTCCG
TGCTACTTTCTCACAGATGGGAAGCTCGGTCTCTAAGGAGACACTTAGAA
GATCGACGAAATCAAGCCATGTACGCTGTGGTGCATGGAGGAGTTGACCA
GGAATTACGTCGCATGTCTGCCGAATACTTGATGAGCCTCCCGTTTGACG
GATATGCAATAGGAGGCAGTCTGGGAAAAGATCGACCTGAACTGTTTGAT
TTGCTTCGTTTTGTAGTTCCCCTGCTCCCAAAAGACAAACCGAATCATCT
CTTGGGCATTGCTGATGTCGACAGCATTCAAGGAGCTGTCCCTTTTGGTG
TGGATACTTTCGATTCTTGTTTCCCGACTCGCCTCGGACGTCACGGTACA
CTGCTCACAAAGCGGTTTGGTCGTATACAAATACGGCAGGGGAAATGGAG
AAACGTGTTCGAACCACCAGATTGGGAGGGAGGGCTCCAGGGCCACACTT
TGGCATATCTGCACCATCTCTTTAAAGTACACGAACCGATTGCCGCCACT
TTGCTTACACTTCATAACCTCCTTTTCATGTCGGAGTTTATGGAATCGCT
CCGATGCAAAATTTTGAATGACGAGATCTAA

protein sequence of Ggra4117.t1

>Ggra4117.t1 ID=Ggra4117.t1|Name=Ggra4117.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MTRVPVPLMRRFCSDLAANPVPRTRIKHPRKAPAIDPYTLPPPPESFPKL
DPLDCFRYELIHQSSRSAARVGRIHTAHGIIDTPGFVAVATNGALKAVDH
RPLEDLLQLIFCNTYHLLLHPGPDVIREAGGLHNFMNRDRPIITDSGGFQ
VFSLAHGSVTDELNMKRSRKREKSLLLEVDENGATFRSYRDGRRITLTPE
SSVDAQKAYGSDIIVPLDELPPYHIDRDVLHRSVLLSHRWEARSLRRHLE
DRRNQAMYAVVHGGVDQELRRMSAEYLMSLPFDGYAIGGSLGKDRPELFD
LLRFVVPLLPKDKPNHLLGIADVDSIQGAVPFGVDTFDSCFPTRLGRHGT
LLTKRFGRIQIRQGKWRNVFEPPDWEGGLQGHTLAYLHHLFKVHEPIAAT
LLTLHNLLFMSEFMESLRCKILNDEI*

mRNA from alignment at tig00000853_pilon:170889..172169+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4117.t1 ID=Ggra4117.t1|Name=Ggra4117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000853_pilon:170889..172169+ (Gracilaria gracilis GNS1m male)
ATGACTAGGGTCCCAGTCCCATTGATGCGGCGATTCTGTTCGGATCTTGC
TGCAAATCCGGTCCCCAGGACCAGGATTAAGCACCCGCGAAAAGCGCCGG
CTATAGACCCCTACACTCTTCCACCCCCTCCGGAATCATTCCCAAAGCTT
GACCCACTGGATTGCTTTAGATACGAGCTTATTCATCAATCATCCCGGTC
TGCTGCTCGAGTGGGACGTATTCACACTGCCCATGGAATCATAGATACTC
CTGGCTTCGTAGCAGTCGCCACAAATGGAGCTTTGAAGGCGGTCGATCAT
CGCCCACTTGAAGATCTCTTGCAGCTTATCTTTTGTAACACATATCATCT
TCTCCTGCATCCTGGCCCAGATGTTATTAGAGAGGCCGGGGGGCTACATA
ACTTTATGAACCGCGACAGACCCATTATTACGGATTCCGGAGGGTTTCAA
GTATTTAGTCTCGCCCACGGCAGCGTTACGGATGAGCTCAACATGAAGAG
ATCTAGAAAGAGGGAAAAGTCTCTTCTTCTTGAGGTTGATGAGAACGGGG
CCACTTTTCGTTCATACAGAGACGGCCGGCGAATCACGCTTACGCCTGAA
TCCAGTGTTGACGCACAGAAAGCGTATGGTTCTGATATTATCGTCCCGCT
TGATGAACTCCCCCCATACCACATCGATAGGGATGTACTACACCGGTCCG
TGCTACTTTCTCACAGATGGGAAGCTCGGTCTCTAAGGAGACACTTAGAA
GATCGACGAAATCAAGCCATGTACGCTGTGGTGCATGGAGGAGTTGACCA
GGAATTACGTCGCATGTCTGCCGAATACTTGATGAGCCTCCCGTTTGACG
GATATGCAATAGGAGGCAGTCTGGGAAAAGATCGACCTGAACTGTTTGAT
TTGCTTCGTTTTGTAGTTCCCCTGCTCCCAAAAGACAAACCGAATCATCT
CTTGGGCATTGCTGATGTCGACAGCATTCAAGGAGCTGTCCCTTTTGGTG
TGGATACTTTCGATTCTTGTTTCCCGACTCGCCTCGGACGTCACGGTACA
CTGCTCACAAAGCGGTTTGGTCGTATACAAATACGGCAGGGGAAATGGAG
AAACGTGTTCGAACCACCAGATTGGGAGGGAGGGCTCCAGGGCCACACTT
TGGCATATCTGCACCATCTCTTTAAAGTACACGAACCGATTGCCGCCACT
TTGCTTACACTTCATAACCTCCTTTTCATGTCGGAGTTTATGGAATCGCT
CCGATGCAAAATTTTGAATGACGAGATCTAA

Coding sequence (CDS) from alignment at tig00000853_pilon:170889..172169+

>Ggra4117.t1 ID=Ggra4117.t1|Name=Ggra4117.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000853_pilon:170889..172169+ (Gracilaria gracilis GNS1m male)
ATGACTAGGGTCCCAGTCCCATTGATGCGGCGATTCTGTTCGGATCTTGC
TGCAAATCCGGTCCCCAGGACCAGGATTAAGCACCCGCGAAAAGCGCCGG
CTATAGACCCCTACACTCTTCCACCCCCTCCGGAATCATTCCCAAAGCTT
GACCCACTGGATTGCTTTAGATACGAGCTTATTCATCAATCATCCCGGTC
TGCTGCTCGAGTGGGACGTATTCACACTGCCCATGGAATCATAGATACTC
CTGGCTTCGTAGCAGTCGCCACAAATGGAGCTTTGAAGGCGGTCGATCAT
CGCCCACTTGAAGATCTCTTGCAGCTTATCTTTTGTAACACATATCATCT
TCTCCTGCATCCTGGCCCAGATGTTATTAGAGAGGCCGGGGGGCTACATA
ACTTTATGAACCGCGACAGACCCATTATTACGGATTCCGGAGGGTTTCAA
GTATTTAGTCTCGCCCACGGCAGCGTTACGGATGAGCTCAACATGAAGAG
ATCTAGAAAGAGGGAAAAGTCTCTTCTTCTTGAGGTTGATGAGAACGGGG
CCACTTTTCGTTCATACAGAGACGGCCGGCGAATCACGCTTACGCCTGAA
TCCAGTGTTGACGCACAGAAAGCGTATGGTTCTGATATTATCGTCCCGCT
TGATGAACTCCCCCCATACCACATCGATAGGGATGTACTACACCGGTCCG
TGCTACTTTCTCACAGATGGGAAGCTCGGTCTCTAAGGAGACACTTAGAA
GATCGACGAAATCAAGCCATGTACGCTGTGGTGCATGGAGGAGTTGACCA
GGAATTACGTCGCATGTCTGCCGAATACTTGATGAGCCTCCCGTTTGACG
GATATGCAATAGGAGGCAGTCTGGGAAAAGATCGACCTGAACTGTTTGAT
TTGCTTCGTTTTGTAGTTCCCCTGCTCCCAAAAGACAAACCGAATCATCT
CTTGGGCATTGCTGATGTCGACAGCATTCAAGGAGCTGTCCCTTTTGGTG
TGGATACTTTCGATTCTTGTTTCCCGACTCGCCTCGGACGTCACGGTACA
CTGCTCACAAAGCGGTTTGGTCGTATACAAATACGGCAGGGGAAATGGAG
AAACGTGTTCGAACCACCAGATTGGGAGGGAGGGCTCCAGGGCCACACTT
TGGCATATCTGCACCATCTCTTTAAAGTACACGAACCGATTGCCGCCACT
TTGCTTACACTTCATAACCTCCTTTTCATGTCGGAGTTTATGGAATCGCT
CCGATGCAAAATTTTGAATGACGAGATCTAA