Ggra4116.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4116.t1
Unique NameGgra4116.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:168410..170080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4116Ggra4116Gracilaria gracilis GNS1m malegenetig00000853_pilon 168410..170080 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4116.t1.stop1Ggra4116.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 168410..168412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4116.t1.CDS1Ggra4116.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 168410..170080 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4116.t1.exon1Ggra4116.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 168410..170080 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4116.t1.start1Ggra4116.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 170078..170080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4116.t1Ggra4116.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 168410..170080 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4116.t1 ID=Ggra4116.t1|Name=Ggra4116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=557bp
MVVSSVTINGVPLHFQDESEEESEEYFVSSEGEPSETSIIDLLDLDDAPE
MEMPQEVRSDSSVLQLVGLHRETRSSSNLLPHARLQPETRRQSTVLPQAR
LQPRRRSTVLSRARLQPETRHQSTVLPQARLQPVTRRQSNVLPQATLQPE
TRRQRTVFPSSNVRIEPMWRRNTSPVRRKRENRSQSVALPPAIENMASEI
SKTMKHLQSLIQRRNAERASSKAPESSNSTACECPVCREPLYASSSCATL
CGHVFHSACVHQLAEYHRGNTAPCPVCRATVHTGELLILRSGLPEAPASE
ESDSVDLTRKTPAEEKSELDHELSRNLKGLENLYTGKSVFQRGVAEARKH
AQREVSEVKKELEKSKAHYSTQARLVHEDRVRVEKTISRIAQREEKLTAL
QEKYEQDLMDIAKKKSDLKVLEERMKVEKGEAEQKTMECNDMLEKVSDKE
QRLDKLRQALEARKKSNDGKRSISTVVEDSRDAKKCKTQPTVSDTRHSQE
SPFSEKLSLPSAMSRPPPPRRPGSKKSSNPTLSLSAFVPKRAGIHRPSTG
VAKRKK*
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spliced messenger RNA

>Ggra4116.t1 ID=Ggra4116.t1|Name=Ggra4116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000853_pilon:168410..170080- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTTTCGTCAGTGACAATAAATGGAGTACCTCTCCATTTTCAAGA
CGAGTCTGAAGAAGAGTCTGAGGAGTATTTCGTGAGTTCAGAGGGAGAGC
CCAGTGAGACGTCCATTATCGATTTATTGGATTTAGACGATGCCCCTGAA
ATGGAAATGCCGCAAGAGGTCCGGAGCGATAGTAGTGTTTTGCAATTGGT
TGGACTGCATCGTGAGACCCGGAGCTCTAGCAACCTTTTGCCTCATGCTA
GATTACAACCCGAGACACGACGCCAGAGCACCGTTTTGCCTCAGGCTAGA
CTACAGCCTCGACGCCGGAGCACTGTTTTGTCTCGGGCTAGATTACAGCC
CGAGACACGACACCAGAGCACTGTTTTGCCTCAGGCTAGATTACAACCCG
TGACAAGACGGCAGAGCAATGTTTTGCCTCAGGCTACATTACAACCCGAG
ACACGACGCCAGAGGACTGTTTTTCCTTCGTCTAATGTCCGAATCGAGCC
TATGTGGCGAAGAAATACTTCCCCAGTTAGAAGGAAACGCGAGAACCGAA
GCCAAAGTGTGGCTTTGCCTCCAGCTATTGAGAATATGGCATCGGAAATC
TCCAAAACAATGAAACACCTTCAGTCTCTCATCCAGAGAAGAAATGCTGA
GCGTGCTTCCAGCAAAGCTCCGGAAAGTAGCAATTCTACAGCATGCGAGT
GTCCCGTCTGTCGCGAACCCCTTTATGCTTCCTCTTCTTGTGCCACACTT
TGCGGACATGTGTTTCACTCTGCATGCGTGCACCAGCTTGCTGAGTATCA
TAGGGGCAATACAGCTCCATGTCCCGTCTGCCGAGCAACTGTTCACACTG
GAGAACTTTTGATCTTGCGAAGCGGTCTGCCTGAAGCTCCGGCTAGTGAG
GAGTCCGATTCTGTTGATCTTACTCGAAAGACTCCCGCCGAAGAGAAGAG
TGAACTAGATCATGAATTGTCCCGAAATCTCAAGGGCTTGGAGAACCTCT
ATACCGGGAAGAGCGTTTTTCAACGTGGTGTTGCGGAAGCAAGAAAGCAC
GCACAGCGCGAAGTAAGCGAAGTGAAGAAAGAACTAGAGAAGTCAAAAGC
CCATTATAGCACACAAGCTCGTTTAGTGCACGAAGATCGTGTAAGGGTTG
AGAAAACGATCTCTAGAATCGCTCAAAGGGAAGAAAAACTGACAGCATTA
CAGGAAAAGTACGAACAAGACTTGATGGACATTGCCAAGAAGAAAAGCGA
TCTTAAAGTTCTTGAGGAGAGAATGAAAGTGGAAAAAGGAGAAGCAGAAC
AGAAGACAATGGAATGTAATGACATGCTCGAGAAAGTCAGTGACAAAGAG
CAGAGGCTTGATAAACTTCGACAGGCACTAGAAGCTAGAAAGAAGTCCAA
CGACGGGAAACGGAGTATTTCAACTGTGGTCGAAGATTCCAGAGATGCAA
AGAAATGCAAGACTCAACCAACCGTCTCTGACACCCGTCATTCTCAGGAG
AGCCCTTTCTCTGAAAAGCTTTCTCTGCCCTCCGCCATGAGTAGACCCCC
ACCACCTCGTCGCCCAGGAAGCAAGAAGTCGAGTAATCCCACTCTGAGCT
TATCAGCCTTCGTGCCGAAACGAGCTGGAATCCATAGGCCAAGTACGGGT
GTTGCTAAACGAAAGAAATGA
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protein sequence of Ggra4116.t1

>Ggra4116.t1 ID=Ggra4116.t1|Name=Ggra4116.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=557bp
MVVSSVTINGVPLHFQDESEEESEEYFVSSEGEPSETSIIDLLDLDDAPE
MEMPQEVRSDSSVLQLVGLHRETRSSSNLLPHARLQPETRRQSTVLPQAR
LQPRRRSTVLSRARLQPETRHQSTVLPQARLQPVTRRQSNVLPQATLQPE
TRRQRTVFPSSNVRIEPMWRRNTSPVRRKRENRSQSVALPPAIENMASEI
SKTMKHLQSLIQRRNAERASSKAPESSNSTACECPVCREPLYASSSCATL
CGHVFHSACVHQLAEYHRGNTAPCPVCRATVHTGELLILRSGLPEAPASE
ESDSVDLTRKTPAEEKSELDHELSRNLKGLENLYTGKSVFQRGVAEARKH
AQREVSEVKKELEKSKAHYSTQARLVHEDRVRVEKTISRIAQREEKLTAL
QEKYEQDLMDIAKKKSDLKVLEERMKVEKGEAEQKTMECNDMLEKVSDKE
QRLDKLRQALEARKKSNDGKRSISTVVEDSRDAKKCKTQPTVSDTRHSQE
SPFSEKLSLPSAMSRPPPPRRPGSKKSSNPTLSLSAFVPKRAGIHRPSTG
VAKRKK*
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mRNA from alignment at tig00000853_pilon:168410..170080-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4116.t1 ID=Ggra4116.t1|Name=Ggra4116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000853_pilon:168410..170080- (Gracilaria gracilis GNS1m male)
ATGGTTGTTTCGTCAGTGACAATAAATGGAGTACCTCTCCATTTTCAAGA
CGAGTCTGAAGAAGAGTCTGAGGAGTATTTCGTGAGTTCAGAGGGAGAGC
CCAGTGAGACGTCCATTATCGATTTATTGGATTTAGACGATGCCCCTGAA
ATGGAAATGCCGCAAGAGGTCCGGAGCGATAGTAGTGTTTTGCAATTGGT
TGGACTGCATCGTGAGACCCGGAGCTCTAGCAACCTTTTGCCTCATGCTA
GATTACAACCCGAGACACGACGCCAGAGCACCGTTTTGCCTCAGGCTAGA
CTACAGCCTCGACGCCGGAGCACTGTTTTGTCTCGGGCTAGATTACAGCC
CGAGACACGACACCAGAGCACTGTTTTGCCTCAGGCTAGATTACAACCCG
TGACAAGACGGCAGAGCAATGTTTTGCCTCAGGCTACATTACAACCCGAG
ACACGACGCCAGAGGACTGTTTTTCCTTCGTCTAATGTCCGAATCGAGCC
TATGTGGCGAAGAAATACTTCCCCAGTTAGAAGGAAACGCGAGAACCGAA
GCCAAAGTGTGGCTTTGCCTCCAGCTATTGAGAATATGGCATCGGAAATC
TCCAAAACAATGAAACACCTTCAGTCTCTCATCCAGAGAAGAAATGCTGA
GCGTGCTTCCAGCAAAGCTCCGGAAAGTAGCAATTCTACAGCATGCGAGT
GTCCCGTCTGTCGCGAACCCCTTTATGCTTCCTCTTCTTGTGCCACACTT
TGCGGACATGTGTTTCACTCTGCATGCGTGCACCAGCTTGCTGAGTATCA
TAGGGGCAATACAGCTCCATGTCCCGTCTGCCGAGCAACTGTTCACACTG
GAGAACTTTTGATCTTGCGAAGCGGTCTGCCTGAAGCTCCGGCTAGTGAG
GAGTCCGATTCTGTTGATCTTACTCGAAAGACTCCCGCCGAAGAGAAGAG
TGAACTAGATCATGAATTGTCCCGAAATCTCAAGGGCTTGGAGAACCTCT
ATACCGGGAAGAGCGTTTTTCAACGTGGTGTTGCGGAAGCAAGAAAGCAC
GCACAGCGCGAAGTAAGCGAAGTGAAGAAAGAACTAGAGAAGTCAAAAGC
CCATTATAGCACACAAGCTCGTTTAGTGCACGAAGATCGTGTAAGGGTTG
AGAAAACGATCTCTAGAATCGCTCAAAGGGAAGAAAAACTGACAGCATTA
CAGGAAAAGTACGAACAAGACTTGATGGACATTGCCAAGAAGAAAAGCGA
TCTTAAAGTTCTTGAGGAGAGAATGAAAGTGGAAAAAGGAGAAGCAGAAC
AGAAGACAATGGAATGTAATGACATGCTCGAGAAAGTCAGTGACAAAGAG
CAGAGGCTTGATAAACTTCGACAGGCACTAGAAGCTAGAAAGAAGTCCAA
CGACGGGAAACGGAGTATTTCAACTGTGGTCGAAGATTCCAGAGATGCAA
AGAAATGCAAGACTCAACCAACCGTCTCTGACACCCGTCATTCTCAGGAG
AGCCCTTTCTCTGAAAAGCTTTCTCTGCCCTCCGCCATGAGTAGACCCCC
ACCACCTCGTCGCCCAGGAAGCAAGAAGTCGAGTAATCCCACTCTGAGCT
TATCAGCCTTCGTGCCGAAACGAGCTGGAATCCATAGGCCAAGTACGGGT
GTTGCTAAACGAAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:168410..170080-

>Ggra4116.t1 ID=Ggra4116.t1|Name=Ggra4116.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1671bp|location=Sequence derived from alignment at tig00000853_pilon:168410..170080- (Gracilaria gracilis GNS1m male)
ATGGTTGTTTCGTCAGTGACAATAAATGGAGTACCTCTCCATTTTCAAGA
CGAGTCTGAAGAAGAGTCTGAGGAGTATTTCGTGAGTTCAGAGGGAGAGC
CCAGTGAGACGTCCATTATCGATTTATTGGATTTAGACGATGCCCCTGAA
ATGGAAATGCCGCAAGAGGTCCGGAGCGATAGTAGTGTTTTGCAATTGGT
TGGACTGCATCGTGAGACCCGGAGCTCTAGCAACCTTTTGCCTCATGCTA
GATTACAACCCGAGACACGACGCCAGAGCACCGTTTTGCCTCAGGCTAGA
CTACAGCCTCGACGCCGGAGCACTGTTTTGTCTCGGGCTAGATTACAGCC
CGAGACACGACACCAGAGCACTGTTTTGCCTCAGGCTAGATTACAACCCG
TGACAAGACGGCAGAGCAATGTTTTGCCTCAGGCTACATTACAACCCGAG
ACACGACGCCAGAGGACTGTTTTTCCTTCGTCTAATGTCCGAATCGAGCC
TATGTGGCGAAGAAATACTTCCCCAGTTAGAAGGAAACGCGAGAACCGAA
GCCAAAGTGTGGCTTTGCCTCCAGCTATTGAGAATATGGCATCGGAAATC
TCCAAAACAATGAAACACCTTCAGTCTCTCATCCAGAGAAGAAATGCTGA
GCGTGCTTCCAGCAAAGCTCCGGAAAGTAGCAATTCTACAGCATGCGAGT
GTCCCGTCTGTCGCGAACCCCTTTATGCTTCCTCTTCTTGTGCCACACTT
TGCGGACATGTGTTTCACTCTGCATGCGTGCACCAGCTTGCTGAGTATCA
TAGGGGCAATACAGCTCCATGTCCCGTCTGCCGAGCAACTGTTCACACTG
GAGAACTTTTGATCTTGCGAAGCGGTCTGCCTGAAGCTCCGGCTAGTGAG
GAGTCCGATTCTGTTGATCTTACTCGAAAGACTCCCGCCGAAGAGAAGAG
TGAACTAGATCATGAATTGTCCCGAAATCTCAAGGGCTTGGAGAACCTCT
ATACCGGGAAGAGCGTTTTTCAACGTGGTGTTGCGGAAGCAAGAAAGCAC
GCACAGCGCGAAGTAAGCGAAGTGAAGAAAGAACTAGAGAAGTCAAAAGC
CCATTATAGCACACAAGCTCGTTTAGTGCACGAAGATCGTGTAAGGGTTG
AGAAAACGATCTCTAGAATCGCTCAAAGGGAAGAAAAACTGACAGCATTA
CAGGAAAAGTACGAACAAGACTTGATGGACATTGCCAAGAAGAAAAGCGA
TCTTAAAGTTCTTGAGGAGAGAATGAAAGTGGAAAAAGGAGAAGCAGAAC
AGAAGACAATGGAATGTAATGACATGCTCGAGAAAGTCAGTGACAAAGAG
CAGAGGCTTGATAAACTTCGACAGGCACTAGAAGCTAGAAAGAAGTCCAA
CGACGGGAAACGGAGTATTTCAACTGTGGTCGAAGATTCCAGAGATGCAA
AGAAATGCAAGACTCAACCAACCGTCTCTGACACCCGTCATTCTCAGGAG
AGCCCTTTCTCTGAAAAGCTTTCTCTGCCCTCCGCCATGAGTAGACCCCC
ACCACCTCGTCGCCCAGGAAGCAAGAAGTCGAGTAATCCCACTCTGAGCT
TATCAGCCTTCGTGCCGAAACGAGCTGGAATCCATAGGCCAAGTACGGGT
GTTGCTAAACGAAAGAAATGA
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